Rh5BG222000
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015705
Physical Location & Seq
Reverse (-)
25710362 .. 25712112
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG222000.1

Sequence Viewer

Length: 1062 bp
ATGGCGCAATTACCTCCTAAAATACCCAGCATGACTCAGAACTGGGCGCCATTCCCCCACCACAGAATAATGCCCTCAATGGCCAACTTCCTCCCCTCCTCCGCCGCCGTCAACCACCCTCCCTCTCCCCCTCACCCCCAGCAGCAGCAACAGTCCTCTTCGTGTTGGATGGACGAGTTCCTAGACTTCTCCTCCGCCCGGCGCGGGGCCCACCGGCGGTCGTCCAGCGACTCCATCGCGTTCCTGGAGTCGCCGCTGAATGTGCTCGACGAGGAGTGCGGGAGGAACCCCACCGTCCACGGCGCCAACAACATCGGCGCCTCGTTCGACCGCCTCGACGACGAGCAGCTCATGTCCATGTTCTCCGACGACGTCGCCGTCCCCCCGACCGTCACCTCCTCGTCCAACCCCTCCACGCCGTCCGACCAGAACAGCAACAACGACGAGATTCACGAGAACGTGAACAACAATAATGTTATTCACCGGCCGTTGATGCATCTCACGATCGACGGCCAGCAGCAGCAGCCGAAGAGCGAGCCCGGCGAGGGCGAGAGCGAGTGCGATCCCAGCGACCCGCATTCTCAGTCCCATGCGCCACTGCCGACCTCCCCCGCCGATCCCAAGAGGGTAAAAAGAATCTTGGCGAATCGGCAATCGGCCCAGCGGTCCAGAGTGAGAAAGCTGCAGTACATATCGGAGCTCGAACGCAGCGTCACATCATTGCAGTCGGAGGTGTCGGCGCTTTCACCGAGGGTTGCGTTTCTAGATCACCAGAGGTTGATTCTCAATGTGGATAACAGTGCTCTCAAGCAAAGGATTGCTGCTTTGGCTCAAGATAAGCTCTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAAATAGAGAGATTAAGGCAGGTTTATCAGCACCAAACCCTAAAGAAGATGGGAAACAATGGCAATAACAACAACCAAAACGCCGCCGCAGCTCCACCGCAACAGCAGCAGCAAGCACACCACCTCAACCCGGCGGACATCATGCTCTGTACGGACCACAAGGAGCAGCAGCAGATTATGAATTGA

Protein Analysis

353

Amino Acids

39.43

Weight (kDa)

6.27

Isoelectric Point (pI)

76.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 206 - 253 9.3e-09 Basic region leucine zipper
bZIP_1 PF00170 208 - 252 2.2e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 886
AccB1I GGYRCC 3 cut(s) 46, 302, 317
AccII CGCG 2 cut(s) 204, 239
AclWI GGATC 2 cut(s) 557, 611
AcoI YGGCCR 3 cut(s) 81, 485, 511
AcyI GRCGYC 4 cut(s) 47, 303, 318, 372
AfaI GTAC 2 cut(s) 689, 1027
AfiI CCNNNNNNNGG 6 cut(s) 198, 204, 205, 216, 545, 1006
AgsI TTSAA 1 cut(s) 847
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 5 cut(s) 349, 682, 700, 841, 968
AluI AGCT 5 cut(s) 349, 682, 700, 841, 968
Alw21I GWGCWC 3 cut(s) 267, 702, 805
AlwI GGATC 2 cut(s) 557, 611
AoxI GGCC 5 cut(s) 81, 207, 485, 511, 657
ApaI GGGCCC 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 696, 728
AspLEI GCGC 7 cut(s) 7, 49, 204, 305, 320, 595, 742
AspS9I GGNCC 5 cut(s) 207, 208, 658, 666, 1030
AsuC2I CCSGG 3 cut(s) 199, 540, 1007
AsuHPI GGTGA 5 cut(s) 125, 385, 473, 738, 761
AvaII GGWCC 2 cut(s) 666, 1030
BaeGI GKGCMC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 3 cut(s) 46, 302, 317
BanII GRGCYC 3 cut(s) 211, 540, 702
BauI CACGAG 1 cut(s) 452
Bbv12I GWGCWC 3 cut(s) 267, 702, 805
BccI CCATC 3 cut(s) 163, 242, 919
BceAI ACGGC 6 cut(s) 92, 316, 362, 403, 472, 526
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 3 cut(s) 199, 540, 1007
BfaI CTAG 2 cut(s) 182, 764
BfmI CTRYAG 1 cut(s) 683
BfoI RGCGCY 4 cut(s) 50, 306, 321, 743
BfuAI ACCTGC 1 cut(s) 886
Bme1390I CCNGG 4 cut(s) 199, 245, 540, 1007
Bme18I GGWCC 2 cut(s) 666, 1030
BmgT120I GGNCC 5 cut(s) 207, 208, 658, 666, 1030
BmiI GGNNCC 6 cut(s) 48, 208, 209, 287, 304, 319
BmrFI CCNGG 4 cut(s) 199, 245, 540, 1007
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 483, 505, 841
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 791, 816
BpuMI CCSGG 3 cut(s) 199, 540, 1007
BsaBI GATNNNNATC 1 cut(s) 855
BsaHI GRCGYC 4 cut(s) 47, 303, 318, 372
BsaJI CCNNGG 2 cut(s) 298, 749
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 204, 205, 216, 545, 1006
Bse118I RCCGGY 2 cut(s) 213, 483
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 298, 749
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 6 cut(s) 198, 204, 205, 216, 545, 1006
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 50, 596
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 4 cut(s) 88, 181, 287, 388
BseSI GKGCMC 1 cut(s) 211
BseX3I CGGCCG 1 cut(s) 485
BseYI CCCAGC 4 cut(s) 26, 138, 566, 660
Bsh1236I CGCG 2 cut(s) 204, 239
Bsh1285I CGRYCG 5 cut(s) 221, 331, 390, 488, 507
BshFI GGCC 5 cut(s) 83, 209, 487, 513, 659
BshNI GGYRCC 3 cut(s) 46, 302, 317
BsiEI CGRYCG 5 cut(s) 221, 331, 390, 488, 507
BsiHKAI GWGCWC 3 cut(s) 267, 702, 805
BsiSI CCGG 5 cut(s) 199, 214, 484, 540, 1007
BslFI GGGAC 2 cut(s) 365, 571
BslI CCNNNNNNNGG 6 cut(s) 198, 204, 205, 216, 545, 1006
BsmFI GGGAC 2 cut(s) 365, 571
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 5 cut(s) 83, 209, 487, 513, 659
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 5 cut(s) 211, 267, 540, 702, 805
Bsp143I GATC 4 cut(s) 504, 562, 616, 766
BspANI GGCC 5 cut(s) 83, 209, 487, 513, 659
BspCNI CTCAG 2 cut(s) 49, 595
BspFNI CGCG 2 cut(s) 204, 239
BspLI GGNNCC 6 cut(s) 48, 208, 209, 287, 304, 319
BspMAI CTGCAG 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 2 cut(s) 557, 611
BspQI GCTCTTC 2 cut(s) 524, 848
BspT107I GGYRCC 3 cut(s) 46, 302, 317
BsrDI GCAATG 1 cut(s) 719
BsrFI RCCGGY 2 cut(s) 213, 483
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 2 cut(s) 213, 483
BssECI CCNNGG 2 cut(s) 298, 749
BssMI GATC 4 cut(s) 504, 562, 616, 766
BssNI GRCGYC 4 cut(s) 47, 303, 318, 372
BssSI CACGAG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 153, 295, 391, 800
Bst6I CTCTTC 3 cut(s) 163, 524, 848
BstACI GRCGYC 4 cut(s) 47, 303, 318, 372
BstC8I GCNNGC 3 cut(s) 515, 536, 990
BstDEI CTNAG 2 cut(s) 36, 582
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 2 cut(s) 204, 239
BstH2I RGCGCY 4 cut(s) 50, 306, 321, 743
BstHHI GCGC 7 cut(s) 7, 49, 204, 305, 320, 595, 742
BstKTI GATC 4 cut(s) 507, 565, 619, 769
BstMBI GATC 4 cut(s) 504, 562, 616, 766
BstMCI CGRYCG 5 cut(s) 221, 331, 390, 488, 507
BstMWI GCNNNNNNNGC 8 cut(s) 262, 493, 523, 540, 567, 827, 965, 982
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 4 cut(s) 197, 243, 538, 1005
BstSFI CTRYAG 1 cut(s) 683
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 2 cut(s) 204, 239
BstZI CGGCCG 1 cut(s) 485
BsuRI GGCC 5 cut(s) 83, 209, 487, 513, 659
BtgI CCRYGG 1 cut(s) 298
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 2 cut(s) 596, 805
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 515, 536, 990
CfoI GCGC 7 cut(s) 7, 49, 204, 305, 320, 595, 742
Cfr10I RCCGGY 2 cut(s) 213, 483
Cfr13I GGNCC 5 cut(s) 207, 208, 658, 666, 1030
CseI GACGC 1 cut(s) 700
Csp6I GTAC 2 cut(s) 688, 1026
CviAII CATG 5 cut(s) 31, 352, 358, 590, 1018
CviQI GTAC 2 cut(s) 688, 1026
DdeI CTNAG 2 cut(s) 36, 582
DinI GGCGCC 3 cut(s) 48, 304, 319
DpnI GATC 4 cut(s) 506, 564, 618, 768
DpnII GATC 4 cut(s) 504, 562, 616, 766
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 3 cut(s) 81, 485, 511
EagI CGGCCG 1 cut(s) 485
Eam1104I CTCTTC 3 cut(s) 163, 524, 848
EarI CTCTTC 3 cut(s) 163, 524, 848
EciI GGCGGA 3 cut(s) 91, 184, 1025
Ecl136II GAGCTC 1 cut(s) 700
EclXI CGGCCG 1 cut(s) 485
Eco24I GRGCYC 3 cut(s) 211, 540, 702
Eco47I GGWCC 2 cut(s) 666, 1030
Eco52I CGGCCG 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 3 cut(s) 211, 540, 702
EgeI GGCGCC 3 cut(s) 48, 304, 319
EheI GGCGCC 3 cut(s) 48, 304, 319
FaeI CATG 5 cut(s) 34, 355, 361, 593, 1021
FaiI YATR 7 cut(s) 32, 353, 359, 591, 692, 1019, 1055
FaqI GGGAC 2 cut(s) 365, 571
FatI CATG 5 cut(s) 30, 351, 357, 589, 1017
FauI CCCGC 4 cut(s) 197, 272, 582, 619
FokI GGATG 1 cut(s) 181
FriOI GRGCYC 3 cut(s) 211, 540, 702
FspBI CTAG 2 cut(s) 182, 764
GlaI GCGC 7 cut(s) 6, 48, 203, 304, 319, 594, 741
GsaI CCCAGC 4 cut(s) 30, 142, 570, 664
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 4 cut(s) 50, 306, 321, 743
HaeIII GGCC 5 cut(s) 83, 209, 487, 513, 659
HapII CCGG 5 cut(s) 199, 214, 484, 540, 1007
HgaI GACGC 1 cut(s) 700
HhaI GCGC 7 cut(s) 7, 49, 204, 305, 320, 595, 742
Hin1I GRCGYC 4 cut(s) 47, 303, 318, 372
Hin1II CATG 5 cut(s) 34, 355, 361, 593, 1021
Hin6I GCGC 7 cut(s) 5, 47, 202, 303, 318, 593, 740
HinP1I GCGC 7 cut(s) 5, 47, 202, 303, 318, 593, 740
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 7 cut(s) 34, 230, 248, 448, 636, 646, 781
HpaII CCGG 5 cut(s) 199, 214, 484, 540, 1007
HphI GGTGA 5 cut(s) 125, 385, 473, 738, 761
Hpy166II GTNNAC 3 cut(s) 112, 298, 463
Hpy188I TCNGA 5 cut(s) 39, 367, 424, 697, 730
Hpy188III TCNNGA 6 cut(s) 452, 502, 669, 764, 833, 860
Hpy8I GTNNAC 3 cut(s) 112, 298, 463
Hpy99I CGWCG 8 cut(s) 272, 341, 344, 371, 374, 377, 446, 512
HpyAV CCTTC 1 cut(s) 868
HpyCH4III ACNGT 4 cut(s) 153, 295, 391, 800
HpyCH4IV ACGT 2 cut(s) 372, 459
HpyCH4V TGCA 3 cut(s) 496, 685, 724
HpyF10VI GCNNNNNNNGC 8 cut(s) 262, 493, 523, 540, 567, 827, 965, 982
HpyF3I CTNAG 2 cut(s) 36, 582
HpySE526I ACGT 2 cut(s) 372, 459
Hsp92I GRCGYC 4 cut(s) 47, 303, 318, 372
Hsp92II CATG 5 cut(s) 34, 355, 361, 593, 1021
HspAI GCGC 7 cut(s) 5, 47, 202, 303, 318, 593, 740
KasI GGCGCC 3 cut(s) 46, 302, 317
Kzo9I GATC 4 cut(s) 504, 562, 616, 766
LguI GCTCTTC 2 cut(s) 524, 848
LmnI GCTCC 3 cut(s) 697, 973, 1039
LweI GCATC 3 cut(s) 483, 505, 841
MaeI CTAG 2 cut(s) 182, 764
MaeII ACGT 2 cut(s) 372, 459
MaeIII GTNAC 2 cut(s) 391, 712
MalI GATC 4 cut(s) 506, 564, 618, 768
MboI GATC 4 cut(s) 504, 562, 616, 766
MboII GAAGA 4 cut(s) 150, 541, 835, 934
MhlI GDGCHC 5 cut(s) 211, 267, 540, 702, 805
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 8, 1057
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 3 cut(s) 47, 303, 318
MlyI GAGTC 3 cut(s) 28, 224, 257
MmeI TCCRAC 5 cut(s) 146, 390, 429, 447, 708
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 498
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 869, 890
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 256, 664
MspI CCGG 5 cut(s) 199, 214, 484, 540, 1007
MspR9I CCNGG 4 cut(s) 199, 245, 540, 1007
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 2 cut(s) 204, 239
MwoI GCNNNNNNNGC 8 cut(s) 262, 493, 523, 540, 567, 827, 965, 982
NarI GGCGCC 3 cut(s) 47, 303, 318
NciI CCSGG 3 cut(s) 199, 540, 1007
NdeII GATC 4 cut(s) 504, 562, 616, 766
NlaIII CATG 5 cut(s) 34, 355, 361, 593, 1021
NlaIV GGNNCC 6 cut(s) 48, 208, 209, 287, 304, 319
NmuCI GTSAC 2 cut(s) 391, 712
NsiI ATGCAT 1 cut(s) 498
PciSI GCTCTTC 2 cut(s) 524, 848
PcsI WCGNNNNNNNCGW 4 cut(s) 333, 375, 450, 708
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 4 cut(s) 448, 636, 646, 781
PflFI GACNNNGTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 243
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 3 cut(s) 28, 224, 256
PluTI GGCGCC 3 cut(s) 50, 306, 321
PpsI GAGTC 3 cut(s) 28, 224, 256
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 4 cut(s) 26, 138, 566, 660
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 6 cut(s) 48, 208, 209, 287, 304, 319
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 5 cut(s) 207, 208, 658, 666, 1030
PstI CTGCAG 1 cut(s) 687
PsyI GACNNNGTC 1 cut(s) 371
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 2 cut(s) 689, 1027
RsaNI GTAC 2 cut(s) 688, 1026
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 1 cut(s) 702
SapI GCTCTTC 2 cut(s) 524, 848
SaqAI TTAA 2 cut(s) 869, 890
Sau3AI GATC 4 cut(s) 504, 562, 616, 766
Sau96I GGNCC 5 cut(s) 207, 208, 658, 666, 1030
SchI GAGTC 3 cut(s) 28, 224, 257
ScrFI CCNGG 4 cut(s) 199, 245, 540, 1007
SduI GDGCHC 5 cut(s) 211, 267, 540, 702, 805
SfaNI GCATC 3 cut(s) 483, 505, 841
SfcI CTRYAG 1 cut(s) 683
SfoI GGCGCC 3 cut(s) 48, 304, 319
SgrAI CRCCGGYG 1 cut(s) 213
SinI GGWCC 2 cut(s) 666, 1030
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 806, 831
SmoI CTYRAG 2 cut(s) 806, 831
Sse9I AATT 2 cut(s) 8, 1057
SspDI GGCGCC 3 cut(s) 46, 302, 317
SspMI CTAG 2 cut(s) 182, 764
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 4 cut(s) 197, 243, 538, 1005
TaaI ACNGT 4 cut(s) 153, 295, 391, 800
TaiI ACGT 2 cut(s) 375, 462
TaqI TCGA 5 cut(s) 267, 327, 336, 507, 702
TasI AATT 2 cut(s) 8, 1057
TatI WGTACW 1 cut(s) 687
TauI GCSGC 4 cut(s) 107, 256, 962, 965
TfiI GAWTC 4 cut(s) 448, 636, 646, 781
Tru1I TTAA 2 cut(s) 869, 890
Tru9I TTAA 2 cut(s) 869, 890
TscAI CASTG 2 cut(s) 603, 805
TseFI GTSAC 2 cut(s) 391, 712
Tsp45I GTSAC 2 cut(s) 391, 712
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 2 cut(s) 603, 805
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 666, 1030
XbaI TCTAGA 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 2 cut(s) 182, 764
ZraI GACGTC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.