RchiOBHm_Chr5g0031811
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015705
Physical Location & Seq
Reverse (-)
25515138 .. 25518137
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31102

Sequence Viewer

Length: 1077 bp
ATGGCGCAATTACCTCCTAAAATACCCAGCATGACTCAGAACTGGGCGCCATTCCCCCACCACAGAATAATGCCCTCAATGGCCAACTTCCTCCCCTCCTCCGCCGCCGTCAACCACCCTCCCTCTCCCCCTCACAACCACCAGCAGCAGCAGCAGCAACAGTCCTCTTCGTGTTGGATGGACGAGTTCCTAGACTTCTCCTCCGCCCGGCGCGGGGCCCACCGGCGGTCGTCCAGCGACTCCATCGCGTTCCTGGAGTCGCCGCTGAATGTGCTCGACGAGGAGTGCGGGAGGAACCCCACCGTCCACGGCGCCAACAACATCGGCGCCTCGTTCGACCGCCTCGACGACGAGCAGCTCATGTCCATGTTCTCCGACGACGTCGCCGTCCCCCCGACCGTCACCTCCTCGTCCAACCCCTCCACGCCGTCCGACCAGAACAGCAACAACGACGAGATTCACGAGAACGTGAACAACAACAATGTTAATCACCGGCCGTTGATGCATCTCACGATCGACGGCCAGCAGCAGCAGCAGCAGCCGAAGAGCGAGCCCGGCGAGGGCGAGAGCGAGTGCGATCCCAGCGACCCGCATTCTCAGTCCCATGCGCCACTGCCGACCTCCCCCGCCGATCCCAAGAGGGTAAAAAGAATCTTGGCTAATCGGCAATCGGCCCAGCGGTCCAGAGTGAGAAAGCTGCAGTACATATCGGAGCTCGAACGCAGCGTCACATCATTGCAGTCGGAGGTGTCGGCGCTTTCACCGAGGGTTGCATTTCTAGATCACCAGAGGTTGATTCTCAATGTGGATAACAGTGCTCTCAAGCAAAGGATTGCTGCTTTAGCTCAAGATAAGCTCTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAAATAGAGAGATTAAGGCAGGTTTATCATCACCAAACCCTAAAGAAGATGGGAAACAATGGCAATAACAACAACCAAAACTCCGCCGCAGCTCCACCGCAACAGCAGCAGCAAGCACACCACCACAACCCGGCGGACATCATGCTCTGTACGGATCACAAGGAGCAGCAGCAGATTATGAATTGA

Protein Analysis

358

Amino Acids

40.15

Weight (kDa)

6.36

Isoelectric Point (pI)

78.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 211 - 258 9.5e-09 Basic region leucine zipper
bZIP_1 PF00170 213 - 258 2.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AatII GACGTC 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 901
AccB1I GGYRCC 3 cut(s) 46, 311, 326
AccII CGCG 2 cut(s) 213, 248
AclWI GGATC 3 cut(s) 572, 626, 1053
AcoI YGGCCR 3 cut(s) 81, 494, 520
AcyI GRCGYC 4 cut(s) 47, 312, 327, 381
AfaI GTAC 2 cut(s) 704, 1042
AfiI CCNNNNNNNGG 6 cut(s) 207, 213, 214, 225, 560, 1021
AgsI TTSAA 1 cut(s) 862
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 6 cut(s) 358, 697, 715, 845, 856, 983
AluI AGCT 6 cut(s) 358, 697, 715, 845, 856, 983
Alw21I GWGCWC 3 cut(s) 276, 717, 820
AlwI GGATC 3 cut(s) 572, 626, 1053
AoxI GGCC 5 cut(s) 81, 216, 494, 520, 672
ApaI GGGCCC 1 cut(s) 220
ArsI GACNNNNNNTTYG 2 cut(s) 711, 743
AspLEI GCGC 7 cut(s) 7, 49, 213, 314, 329, 610, 757
AspS9I GGNCC 4 cut(s) 216, 217, 673, 681
AsuC2I CCSGG 3 cut(s) 208, 555, 1022
AsuHPI GGTGA 5 cut(s) 394, 482, 753, 776, 914
AvaII GGWCC 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 3 cut(s) 46, 311, 326
BanII GRGCYC 3 cut(s) 220, 555, 717
BauI CACGAG 1 cut(s) 461
Bbv12I GWGCWC 3 cut(s) 276, 717, 820
BccI CCATC 3 cut(s) 172, 251, 934
BceAI ACGGC 6 cut(s) 92, 325, 371, 412, 481, 535
BciT130I CCWGG 1 cut(s) 254
BcnI CCSGG 3 cut(s) 208, 555, 1022
BfaI CTAG 2 cut(s) 191, 779
BfmI CTRYAG 1 cut(s) 698
BfoI RGCGCY 4 cut(s) 50, 315, 330, 758
BfuAI ACCTGC 1 cut(s) 901
Bme1390I CCNGG 4 cut(s) 208, 254, 555, 1022
Bme18I GGWCC 1 cut(s) 681
BmgT120I GGNCC 4 cut(s) 216, 217, 673, 681
BmiI GGNNCC 6 cut(s) 48, 217, 218, 296, 313, 328
BmrFI CCNGG 4 cut(s) 208, 254, 555, 1022
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 492, 514, 856
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 806, 831
BpuMI CCSGG 3 cut(s) 208, 555, 1022
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 4 cut(s) 47, 312, 327, 381
BsaJI CCNNGG 2 cut(s) 307, 764
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 956, 986
Bsc4I CCNNNNNNNGG 6 cut(s) 207, 213, 214, 225, 560, 1021
Bse118I RCCGGY 2 cut(s) 222, 492
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 734
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 307, 764
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 6 cut(s) 207, 213, 214, 225, 560, 1021
BseMI GCAATG 1 cut(s) 734
BseMII CTCAG 2 cut(s) 50, 611
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 4 cut(s) 88, 190, 296, 397
BseSI GKGCMC 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 494
BseYI CCCAGC 3 cut(s) 26, 581, 675
Bsh1236I CGCG 2 cut(s) 213, 248
Bsh1285I CGRYCG 5 cut(s) 230, 340, 399, 497, 516
BshFI GGCC 5 cut(s) 83, 218, 496, 522, 674
BshNI GGYRCC 3 cut(s) 46, 311, 326
BsiEI CGRYCG 5 cut(s) 230, 340, 399, 497, 516
BsiHKAI GWGCWC 3 cut(s) 276, 717, 820
BsiSI CCGG 5 cut(s) 208, 223, 493, 555, 1022
BslFI GGGAC 2 cut(s) 374, 586
BslI CCNNNNNNNGG 6 cut(s) 207, 213, 214, 225, 560, 1021
BsmFI GGGAC 2 cut(s) 374, 586
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 5 cut(s) 83, 218, 496, 522, 674
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 5 cut(s) 220, 276, 555, 717, 820
Bsp143I GATC 5 cut(s) 513, 577, 631, 781, 1045
BspANI GGCC 5 cut(s) 83, 218, 496, 522, 674
BspCNI CTCAG 2 cut(s) 49, 610
BspFNI CGCG 2 cut(s) 213, 248
BspLI GGNNCC 6 cut(s) 48, 217, 218, 296, 313, 328
BspMAI CTGCAG 1 cut(s) 702
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 572, 626, 1053
BspQI GCTCTTC 2 cut(s) 539, 863
BspT107I GGYRCC 3 cut(s) 46, 311, 326
BsrDI GCAATG 1 cut(s) 734
BsrFI RCCGGY 2 cut(s) 222, 492
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 2 cut(s) 222, 492
BssECI CCNNGG 2 cut(s) 307, 764
BssMI GATC 5 cut(s) 513, 577, 631, 781, 1045
BssNI GRCGYC 4 cut(s) 47, 312, 327, 381
BssSI CACGAG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 162, 304, 400, 815
Bst6I CTCTTC 3 cut(s) 172, 539, 863
BstACI GRCGYC 4 cut(s) 47, 312, 327, 381
BstC8I GCNNGC 3 cut(s) 524, 551, 1005
BstDEI CTNAG 2 cut(s) 36, 597
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 213, 248
BstH2I RGCGCY 4 cut(s) 50, 315, 330, 758
BstHHI GCGC 7 cut(s) 7, 49, 213, 314, 329, 610, 757
BstKTI GATC 5 cut(s) 516, 580, 634, 784, 1048
BstMBI GATC 5 cut(s) 513, 577, 631, 781, 1045
BstMCI CGRYCG 5 cut(s) 230, 340, 399, 497, 516
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 206, 252, 553, 1020
BstSFI CTRYAG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 2 cut(s) 213, 248
BstZI CGGCCG 1 cut(s) 494
BsuRI GGCC 5 cut(s) 83, 218, 496, 522, 674
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 611
BtsIMutI CAGTG 2 cut(s) 611, 820
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 3 cut(s) 524, 551, 1005
CfoI GCGC 7 cut(s) 7, 49, 213, 314, 329, 610, 757
Cfr10I RCCGGY 2 cut(s) 222, 492
Cfr13I GGNCC 4 cut(s) 216, 217, 673, 681
CseI GACGC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 703, 1041
CviAII CATG 5 cut(s) 31, 361, 367, 605, 1033
CviQI GTAC 2 cut(s) 703, 1041
DdeI CTNAG 2 cut(s) 36, 597
DinI GGCGCC 3 cut(s) 48, 313, 328
DpnI GATC 5 cut(s) 515, 579, 633, 783, 1047
DpnII GATC 5 cut(s) 513, 577, 631, 781, 1045
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 3 cut(s) 81, 494, 520
EagI CGGCCG 1 cut(s) 494
Eam1104I CTCTTC 3 cut(s) 172, 539, 863
EarI CTCTTC 3 cut(s) 172, 539, 863
EciI GGCGGA 4 cut(s) 91, 193, 964, 1040
Ecl136II GAGCTC 1 cut(s) 715
EclXI CGGCCG 1 cut(s) 494
Eco24I GRGCYC 3 cut(s) 220, 555, 717
Eco47I GGWCC 1 cut(s) 681
Eco52I CGGCCG 1 cut(s) 494
Eco53kI GAGCTC 1 cut(s) 715
EcoICRI GAGCTC 1 cut(s) 715
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 507
EcoT38I GRGCYC 3 cut(s) 220, 555, 717
EgeI GGCGCC 3 cut(s) 48, 313, 328
EheI GGCGCC 3 cut(s) 48, 313, 328
FaeI CATG 5 cut(s) 34, 364, 370, 608, 1036
FaiI YATR 7 cut(s) 32, 362, 368, 606, 707, 1034, 1070
FaqI GGGAC 2 cut(s) 374, 586
FatI CATG 5 cut(s) 30, 360, 366, 604, 1032
FauI CCCGC 4 cut(s) 206, 281, 597, 634
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 3 cut(s) 220, 555, 717
FspBI CTAG 2 cut(s) 191, 779
GlaI GCGC 7 cut(s) 6, 48, 212, 313, 328, 609, 756
GsaI CCCAGC 3 cut(s) 30, 585, 679
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 4 cut(s) 50, 315, 330, 758
HaeIII GGCC 5 cut(s) 83, 218, 496, 522, 674
HapII CCGG 5 cut(s) 208, 223, 493, 555, 1022
HgaI GACGC 1 cut(s) 715
HhaI GCGC 7 cut(s) 7, 49, 213, 314, 329, 610, 757
Hin1I GRCGYC 4 cut(s) 47, 312, 327, 381
Hin1II CATG 5 cut(s) 34, 364, 370, 608, 1036
Hin6I GCGC 7 cut(s) 5, 47, 211, 312, 327, 608, 755
HinP1I GCGC 7 cut(s) 5, 47, 211, 312, 327, 608, 755
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 6 cut(s) 34, 239, 257, 457, 651, 796
HpaII CCGG 5 cut(s) 208, 223, 493, 555, 1022
HphI GGTGA 5 cut(s) 394, 482, 753, 776, 914
Hpy166II GTNNAC 3 cut(s) 112, 307, 472
Hpy188I TCNGA 5 cut(s) 39, 376, 433, 712, 745
Hpy188III TCNNGA 6 cut(s) 461, 511, 684, 779, 848, 875
Hpy8I GTNNAC 3 cut(s) 112, 307, 472
Hpy99I CGWCG 8 cut(s) 281, 350, 353, 380, 383, 386, 455, 521
HpyAV CCTTC 1 cut(s) 883
HpyCH4III ACNGT 4 cut(s) 162, 304, 400, 815
HpyCH4IV ACGT 2 cut(s) 381, 468
HpyCH4V TGCA 4 cut(s) 505, 700, 739, 773
HpyF3I CTNAG 2 cut(s) 36, 597
HpySE526I ACGT 2 cut(s) 381, 468
Hsp92I GRCGYC 4 cut(s) 47, 312, 327, 381
Hsp92II CATG 5 cut(s) 34, 364, 370, 608, 1036
HspAI GCGC 7 cut(s) 5, 47, 211, 312, 327, 608, 755
KasI GGCGCC 3 cut(s) 46, 311, 326
Kzo9I GATC 5 cut(s) 513, 577, 631, 781, 1045
LguI GCTCTTC 2 cut(s) 539, 863
LmnI GCTCC 3 cut(s) 712, 988, 1054
LweI GCATC 3 cut(s) 492, 514, 856
MaeI CTAG 2 cut(s) 191, 779
MaeII ACGT 2 cut(s) 381, 468
MaeIII GTNAC 2 cut(s) 400, 727
MalI GATC 5 cut(s) 515, 579, 633, 783, 1047
MboI GATC 5 cut(s) 513, 577, 631, 781, 1045
MboII GAAGA 4 cut(s) 159, 556, 850, 949
MhlI GDGCHC 5 cut(s) 220, 276, 555, 717, 820
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 8, 1072
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 3 cut(s) 47, 312, 327
MlyI GAGTC 3 cut(s) 28, 233, 266
MmeI TCCRAC 5 cut(s) 155, 399, 438, 456, 723
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 507
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 486, 884, 905
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 265, 679
MspI CCGG 5 cut(s) 208, 223, 493, 555, 1022
MspR9I CCNGG 4 cut(s) 208, 254, 555, 1022
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 2 cut(s) 213, 248
NarI GGCGCC 3 cut(s) 47, 312, 327
NciI CCSGG 3 cut(s) 208, 555, 1022
NdeII GATC 5 cut(s) 513, 577, 631, 781, 1045
NlaIII CATG 5 cut(s) 34, 364, 370, 608, 1036
NlaIV GGNNCC 6 cut(s) 48, 217, 218, 296, 313, 328
NmuCI GTSAC 2 cut(s) 400, 727
NsiI ATGCAT 1 cut(s) 507
PciSI GCTCTTC 2 cut(s) 539, 863
PcsI WCGNNNNNNNCGW 4 cut(s) 342, 384, 459, 723
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 3 cut(s) 457, 651, 796
PflFI GACNNNGTC 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 252
Ple19I CGATCG 1 cut(s) 516
PleI GAGTC 3 cut(s) 28, 233, 265
PluTI GGCGCC 3 cut(s) 50, 315, 330
PpsI GAGTC 3 cut(s) 28, 233, 265
Psp124BI GAGCTC 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 3 cut(s) 26, 581, 675
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 6 cut(s) 48, 217, 218, 296, 313, 328
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 216, 217, 673, 681
PstI CTGCAG 1 cut(s) 702
PsyI GACNNNGTC 1 cut(s) 380
PvuI CGATCG 1 cut(s) 516
RsaI GTAC 2 cut(s) 704, 1042
RsaNI GTAC 2 cut(s) 703, 1041
RseI CAYNNNNRTG 1 cut(s) 365
SacI GAGCTC 1 cut(s) 717
SapI GCTCTTC 2 cut(s) 539, 863
SaqAI TTAA 3 cut(s) 486, 884, 905
Sau3AI GATC 5 cut(s) 513, 577, 631, 781, 1045
Sau96I GGNCC 4 cut(s) 216, 217, 673, 681
SchI GAGTC 3 cut(s) 28, 233, 266
ScrFI CCNGG 4 cut(s) 208, 254, 555, 1022
SduI GDGCHC 5 cut(s) 220, 276, 555, 717, 820
SfaNI GCATC 3 cut(s) 492, 514, 856
SfcI CTRYAG 1 cut(s) 698
SfoI GGCGCC 3 cut(s) 48, 313, 328
SgrAI CRCCGGYG 1 cut(s) 222
SinI GGWCC 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 821, 846
SmoI CTYRAG 2 cut(s) 821, 846
Sse9I AATT 2 cut(s) 8, 1072
SspDI GGCGCC 3 cut(s) 46, 311, 326
SspMI CTAG 2 cut(s) 191, 779
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 4 cut(s) 206, 252, 553, 1020
TaaI ACNGT 4 cut(s) 162, 304, 400, 815
TaiI ACGT 2 cut(s) 384, 471
TaqI TCGA 5 cut(s) 276, 336, 345, 516, 717
TasI AATT 2 cut(s) 8, 1072
TatI WGTACW 1 cut(s) 702
TauI GCSGC 3 cut(s) 107, 265, 980
TfiI GAWTC 3 cut(s) 457, 651, 796
Tru1I TTAA 3 cut(s) 486, 884, 905
Tru9I TTAA 3 cut(s) 486, 884, 905
TscAI CASTG 2 cut(s) 618, 820
TseFI GTSAC 2 cut(s) 400, 727
Tsp45I GTSAC 2 cut(s) 400, 727
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 2 cut(s) 618, 820
Tth111I GACNNNGTC 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 681
XbaI TCTAGA 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 2 cut(s) 191, 779
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.