RLG00000033348
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015705
Physical Location & Seq
Reverse (-)
26050126 .. 26052098
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033348

Sequence Viewer

Length: 1083 bp
ATGGCGCAATTACCTCCTAAAATACCCAGCATGACTCAGAACTGGGCGCCATTCCCCCACCACAGAATAATGCCCTCAATGGCCAACTTCCTCCCCTCCTCCGCCGCCGTCAACCACCCTCCCTCTCCCCCTCACACCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCCTCTTCGTGTTGGATGGACGAGTTCCTAGACTTCTCCTCCGCTCGGCGCGGGGCCCACCGGCGGTCGGCCAGCGACTCCATCGCGTTCCTGGAGTCGCCGCTGAATGTGCTCGACGAGGAGTGCGGGAGGAACCCCACCGTCCACGGGGCCAACAACATCGGCGCCTCGTTCGACCGCCTCGACGACGAGCAGCTCATGTCCATGTTCTCCGACGACGTCGCCGTTCCCCCGCCGACCGTCACCTCCTCGTCGAACCCCTCCACGCCGTCCGACCAGAACAGCAACAACGACGAGATTCACGAGAACGTGAACAACAACAATAACAACAATGTTAATCACCGGCCGTTGATGCATCTCACGATCGACGGCCAGCAGCAGCCGAAGAGCGAGCCCGGCGAGGGCGAGAGCGAGTGCGATCCCAGCGACCCGCATTCTCAGTCCCATGCGCCACTGCCGACCTCCCCCGCCGATCCCAAGAGGGTAAAAAGAATCTTGGCGAATCGGCAATCGGCCCAGCGGTCCAGAGTGAGAAAGCTGCAGTACATATCGGAGCTCGAACGCAGCGTCACATCATTGCAGTCGGAGGTGTCGGCGCTTTCACCGAGGGTTGCATTTCTAGATCACCAGAGGTTGATTCTCAATGTGGATAACAGTGCTCTCAAGCAAAGGATTGCTGCTTTGGCTCAAGATAAGCTCTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAGATAGAGAGATTAAGGCAGGTTTATCAGCACCAAACCCTAAAGAAGATGGGGAACAATGGCAACAACAACCAAAATGCCGCCGCAGCTCCACCGCAACAGCAGCAGCAAGCACACCACCACAACCCTGCGGACATCATGCTCTGTACGGATCACAAGGAGCAGCAGCAGATTATGAATTGA

Protein Analysis

361

Amino Acids

40.28

Weight (kDa)

6.3

Isoelectric Point (pI)

75.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 214 - 261 9.6e-09 Basic region leucine zipper
bZIP_1 PF00170 216 - 260 2.2e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 910
AccB1I GGYRCC 2 cut(s) 46, 332
AccBSI CCGCTC 1 cut(s) 212
AccII CGCG 2 cut(s) 219, 254
AclWI GGATC 3 cut(s) 581, 635, 1059
AcoI YGGCCR 4 cut(s) 81, 237, 512, 538
AcyI GRCGYC 3 cut(s) 47, 333, 387
AfaI GTAC 2 cut(s) 713, 1048
AfiI CCNNNNNNNGG 5 cut(s) 213, 231, 235, 315, 569
AgsI TTSAA 1 cut(s) 871
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 5 cut(s) 364, 706, 724, 865, 989
AluI AGCT 5 cut(s) 364, 706, 724, 865, 989
Alw21I GWGCWC 3 cut(s) 282, 726, 829
AlwI GGATC 3 cut(s) 581, 635, 1059
AoxI GGCC 7 cut(s) 81, 222, 237, 318, 512, 538, 681
ApaI GGGCCC 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
AspLEI GCGC 6 cut(s) 7, 49, 219, 335, 619, 766
AspS9I GGNCC 5 cut(s) 222, 223, 318, 682, 690
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 4 cut(s) 403, 500, 762, 785
AvaII GGWCC 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 46, 332
BanII GRGCYC 3 cut(s) 226, 564, 726
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 3 cut(s) 282, 726, 829
BccI CCATC 3 cut(s) 178, 257, 943
BceAI ACGGC 5 cut(s) 92, 377, 421, 499, 553
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 564
BfaI CTAG 2 cut(s) 197, 788
BfmI CTRYAG 1 cut(s) 707
BfoI RGCGCY 3 cut(s) 50, 336, 767
BfuAI ACCTGC 1 cut(s) 910
Bme1390I CCNGG 2 cut(s) 260, 564
Bme18I GGWCC 1 cut(s) 690
BmgT120I GGNCC 5 cut(s) 222, 223, 318, 682, 690
BmiI GGNNCC 6 cut(s) 48, 223, 224, 302, 319, 334
BmrFI CCNGG 2 cut(s) 260, 564
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 510, 532, 865
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 2 cut(s) 815, 840
BpuMI CCSGG 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 879
BsaHI GRCGYC 3 cut(s) 47, 333, 387
BsaJI CCNNGG 2 cut(s) 313, 773
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 231, 235, 315, 569
Bse118I RCCGGY 2 cut(s) 228, 510
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 313, 773
BseGI GGATG 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 5 cut(s) 213, 231, 235, 315, 569
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 2 cut(s) 50, 620
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 4 cut(s) 88, 196, 302, 406
BseSI GKGCMC 1 cut(s) 226
BseX3I CGGCCG 1 cut(s) 512
BseYI CCCAGC 4 cut(s) 26, 138, 590, 684
Bsh1236I CGCG 2 cut(s) 219, 254
Bsh1285I CGRYCG 5 cut(s) 236, 346, 408, 515, 534
BshFI GGCC 7 cut(s) 83, 224, 239, 320, 514, 540, 683
BshNI GGYRCC 2 cut(s) 46, 332
BsiEI CGRYCG 5 cut(s) 236, 346, 408, 515, 534
BsiHKAI GWGCWC 3 cut(s) 282, 726, 829
BsiSI CCGG 3 cut(s) 229, 511, 564
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 5 cut(s) 213, 231, 235, 315, 569
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 7 cut(s) 83, 224, 239, 320, 514, 540, 683
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 5 cut(s) 226, 282, 564, 726, 829
Bsp143I GATC 5 cut(s) 531, 586, 640, 790, 1051
BspANI GGCC 7 cut(s) 83, 224, 239, 320, 514, 540, 683
BspCNI CTCAG 2 cut(s) 49, 619
BspFNI CGCG 2 cut(s) 219, 254
BspLI GGNNCC 6 cut(s) 48, 223, 224, 302, 319, 334
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 3 cut(s) 581, 635, 1059
BspQI GCTCTTC 2 cut(s) 548, 872
BspT107I GGYRCC 2 cut(s) 46, 332
BsrBI CCGCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 743
BsrFI RCCGGY 2 cut(s) 228, 510
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 2 cut(s) 228, 510
BssECI CCNNGG 2 cut(s) 313, 773
BssMI GATC 5 cut(s) 531, 586, 640, 790, 1051
BssNI GRCGYC 3 cut(s) 47, 333, 387
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 4 cut(s) 168, 310, 409, 824
Bst6I CTCTTC 3 cut(s) 178, 548, 872
BstACI GRCGYC 3 cut(s) 47, 333, 387
BstC8I GCNNGC 4 cut(s) 241, 542, 560, 1011
BstDEI CTNAG 2 cut(s) 36, 606
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 219, 254
BstH2I RGCGCY 3 cut(s) 50, 336, 767
BstHHI GCGC 6 cut(s) 7, 49, 219, 335, 619, 766
BstKTI GATC 5 cut(s) 534, 589, 643, 793, 1054
BstMBI GATC 5 cut(s) 531, 586, 640, 790, 1051
BstMCI CGRYCG 5 cut(s) 236, 346, 408, 515, 534
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 562
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 2 cut(s) 219, 254
BstZI CGGCCG 1 cut(s) 512
BsuRI GGCC 7 cut(s) 83, 224, 239, 320, 514, 540, 683
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 2 cut(s) 620, 829
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 4 cut(s) 241, 542, 560, 1011
CfoI GCGC 6 cut(s) 7, 49, 219, 335, 619, 766
Cfr10I RCCGGY 2 cut(s) 228, 510
Cfr13I GGNCC 5 cut(s) 222, 223, 318, 682, 690
CseI GACGC 1 cut(s) 724
Csp6I GTAC 2 cut(s) 712, 1047
CviAII CATG 5 cut(s) 31, 367, 373, 614, 1039
CviQI GTAC 2 cut(s) 712, 1047
DdeI CTNAG 2 cut(s) 36, 606
DinI GGCGCC 2 cut(s) 48, 334
DpnI GATC 5 cut(s) 533, 588, 642, 792, 1053
DpnII GATC 5 cut(s) 531, 586, 640, 790, 1051
EaeI YGGCCR 4 cut(s) 81, 237, 512, 538
EagI CGGCCG 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 178, 548, 872
EarI CTCTTC 3 cut(s) 178, 548, 872
EciI GGCGGA 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 724
EclXI CGGCCG 1 cut(s) 512
Eco24I GRGCYC 3 cut(s) 226, 564, 726
Eco47I GGWCC 1 cut(s) 690
Eco52I CGGCCG 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 724
EcoICRI GAGCTC 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 3 cut(s) 226, 564, 726
EgeI GGCGCC 2 cut(s) 48, 334
EheI GGCGCC 2 cut(s) 48, 334
FaeI CATG 5 cut(s) 34, 370, 376, 617, 1042
FaiI YATR 7 cut(s) 32, 368, 374, 615, 716, 1040, 1076
FaqI GGGAC 1 cut(s) 595
FatI CATG 5 cut(s) 30, 366, 372, 613, 1038
FauI CCCGC 5 cut(s) 212, 287, 408, 606, 643
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 3 cut(s) 226, 564, 726
FspBI CTAG 2 cut(s) 197, 788
GlaI GCGC 6 cut(s) 6, 48, 218, 334, 618, 765
GsaI CCCAGC 4 cut(s) 30, 142, 594, 688
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 3 cut(s) 50, 336, 767
HaeIII GGCC 7 cut(s) 83, 224, 239, 320, 514, 540, 683
HapII CCGG 3 cut(s) 229, 511, 564
HgaI GACGC 1 cut(s) 724
HhaI GCGC 6 cut(s) 7, 49, 219, 335, 619, 766
Hin1I GRCGYC 3 cut(s) 47, 333, 387
Hin1II CATG 5 cut(s) 34, 370, 376, 617, 1042
Hin6I GCGC 6 cut(s) 5, 47, 217, 333, 617, 764
HinP1I GCGC 6 cut(s) 5, 47, 217, 333, 617, 764
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 7 cut(s) 34, 245, 263, 466, 660, 670, 805
HpaII CCGG 3 cut(s) 229, 511, 564
HphI GGTGA 4 cut(s) 403, 500, 762, 785
Hpy166II GTNNAC 3 cut(s) 112, 313, 481
Hpy188I TCNGA 5 cut(s) 39, 382, 442, 721, 754
Hpy188III TCNNGA 6 cut(s) 470, 529, 693, 788, 857, 884
Hpy8I GTNNAC 3 cut(s) 112, 313, 481
Hpy99I CGWCG 9 cut(s) 287, 356, 359, 386, 389, 392, 424, 464, 539
HpyAV CCTTC 1 cut(s) 892
HpyCH4III ACNGT 4 cut(s) 168, 310, 409, 824
HpyCH4IV ACGT 2 cut(s) 387, 477
HpyCH4V TGCA 4 cut(s) 523, 709, 748, 782
HpyF3I CTNAG 2 cut(s) 36, 606
HpySE526I ACGT 2 cut(s) 387, 477
Hsp92I GRCGYC 3 cut(s) 47, 333, 387
Hsp92II CATG 5 cut(s) 34, 370, 376, 617, 1042
HspAI GCGC 6 cut(s) 5, 47, 217, 333, 617, 764
KasI GGCGCC 2 cut(s) 46, 332
Kzo9I GATC 5 cut(s) 531, 586, 640, 790, 1051
LguI GCTCTTC 2 cut(s) 548, 872
LmnI GCTCC 3 cut(s) 721, 994, 1060
LweI GCATC 3 cut(s) 510, 532, 865
MaeI CTAG 2 cut(s) 197, 788
MaeII ACGT 2 cut(s) 387, 477
MaeIII GTNAC 2 cut(s) 409, 736
MalI GATC 5 cut(s) 533, 588, 642, 792, 1053
MbiI CCGCTC 1 cut(s) 212
MboI GATC 5 cut(s) 531, 586, 640, 790, 1051
MboII GAAGA 4 cut(s) 165, 565, 859, 958
MhlI GDGCHC 5 cut(s) 226, 282, 564, 726, 829
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 8, 1078
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 2 cut(s) 47, 333
MlyI GAGTC 3 cut(s) 28, 239, 272
MmeI TCCRAC 4 cut(s) 161, 405, 465, 732
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 525
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 504, 893, 914
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 271, 688
MspI CCGG 3 cut(s) 229, 511, 564
MspR9I CCNGG 2 cut(s) 260, 564
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 219, 254
NarI GGCGCC 2 cut(s) 47, 333
NciI CCSGG 1 cut(s) 564
NdeII GATC 5 cut(s) 531, 586, 640, 790, 1051
NlaIII CATG 5 cut(s) 34, 370, 376, 617, 1042
NlaIV GGNNCC 6 cut(s) 48, 223, 224, 302, 319, 334
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 409, 736
NsiI ATGCAT 1 cut(s) 525
PciSI GCTCTTC 2 cut(s) 548, 872
PcsI WCGNNNNNNNCGW 4 cut(s) 348, 390, 468, 732
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 4 cut(s) 466, 660, 670, 805
PflFI GACNNNGTC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 258
Ple19I CGATCG 1 cut(s) 534
PleI GAGTC 3 cut(s) 28, 239, 271
PluTI GGCGCC 2 cut(s) 50, 336
PpsI GAGTC 3 cut(s) 28, 239, 271
Psp124BI GAGCTC 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 4 cut(s) 26, 138, 590, 684
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 6 cut(s) 48, 223, 224, 302, 319, 334
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 5 cut(s) 222, 223, 318, 682, 690
PstI CTGCAG 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 386
PvuI CGATCG 1 cut(s) 534
RsaI GTAC 2 cut(s) 713, 1048
RsaNI GTAC 2 cut(s) 712, 1047
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 726
SapI GCTCTTC 2 cut(s) 548, 872
SaqAI TTAA 3 cut(s) 504, 893, 914
Sau3AI GATC 5 cut(s) 531, 586, 640, 790, 1051
Sau96I GGNCC 5 cut(s) 222, 223, 318, 682, 690
SchI GAGTC 3 cut(s) 28, 239, 272
ScrFI CCNGG 2 cut(s) 260, 564
SduI GDGCHC 5 cut(s) 226, 282, 564, 726, 829
SfaNI GCATC 3 cut(s) 510, 532, 865
SfcI CTRYAG 1 cut(s) 707
SfoI GGCGCC 2 cut(s) 48, 334
SgrAI CRCCGGYG 1 cut(s) 228
SinI GGWCC 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 830, 855
SmoI CTYRAG 2 cut(s) 830, 855
Sse9I AATT 2 cut(s) 8, 1078
SspDI GGCGCC 2 cut(s) 46, 332
SspMI CTAG 2 cut(s) 197, 788
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 258, 562
TaaI ACNGT 4 cut(s) 168, 310, 409, 824
TaiI ACGT 2 cut(s) 390, 480
TaqI TCGA 6 cut(s) 282, 342, 351, 422, 534, 726
TasI AATT 2 cut(s) 8, 1078
TatI WGTACW 1 cut(s) 711
TauI GCSGC 4 cut(s) 107, 271, 983, 986
TfiI GAWTC 4 cut(s) 466, 660, 670, 805
Tru1I TTAA 3 cut(s) 504, 893, 914
Tru9I TTAA 3 cut(s) 504, 893, 914
TscAI CASTG 2 cut(s) 627, 829
TseFI GTSAC 2 cut(s) 409, 736
Tsp45I GTSAC 2 cut(s) 409, 736
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 2 cut(s) 627, 829
Tth111I GACNNNGTC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 690
XbaI TCTAGA 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 2 cut(s) 197, 788
ZraI GACGTC 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.