Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006481

Physical Location & Seq

Genomic Coordinates Forward (+)

36433925 .. 36434987

Gene Structure 1063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1283800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTTCTTGTCTAGATACGTGAATATGAGTTCCAGATGTTTTGCAGAGGGAAAGATTTTATTTGAAGAATATATATTCAAGTTAAAGGACATTGTTGGCGTTCGTATGCTTATAGAAGCAGTAAGTATTGGAAAAGGGAAGCAAGACCTTACTGGCACTACTTTGAAGCCAACAAAGAACAGTCTTGCTATCTCTTTTCGTCCTGAAGTACCGATTGGAAAAGCCTGTTCCTCCCTTACAACGCCAGAGATCATCAAGTATCTAACAGGAGATTTTAAGTTGACTAAAAAGCAGTCGAATGATCTTTTCTGGGAAGCTGTTTGGCCCCGTCTTTTAGCACGAAGATGGCATTCAGAGCAGCGTAATCTGTCCTTGGTGTTTCCTGTACCTGGTATAGAGAAGTTTTCAAGGCGCCTTGTGAGAGGTAATCAGTACTTTGATTCTGTCCATGAGGTCTTGAAGAATGTGGCATCTAACCCCGATGTTCTTGAGCTTGCTAATGAAGAAGCTAAAGGCAGAGAAGAGAAATCAGCTAAATTCAATGAAGTTGATATGTTAAATAAGCAACACCGTCATTACCTCCTTCCGCACAGGAGCACAAATGGGGATAGAGATCTAATGAAGTTTAAAATTGTGGATACAAGTATGCTTCATGTTGCAGAAGCAGAACAATCGAAGGTACGAAAACTGAGGAGTTTACCTGCTCAAACTGAAAGTATAAGTACTCCTTCCAATCTTCTTACTGAAACCGAACAAGATATATATGAAGAGTCAAAAGATGATGCAGAAGAAAAAACTACCTCAAACCCCGCTGAGGATATAATTGACAGAACAACATTTCTCGACTCCTCAGATTGCGTAACTAGTATCCATGAATCTCAATGTTTAAATCTTCTCAATGACAGGTCTCCAAGCAAGGCAACGAATTATAACTGCATCCCCACGCTGAAGTCAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.46

Weight (kDa)

6.42

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7952	PF25826	9 - 44	6.1e-08	Domain of unknown function (DUF7952)
DUF7650	PF24662	82 - 160	6.3e-33	Domain of unknown function (DUF7650)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47820 AT2G47820
fragaria_vesca	FvH4_4g17850 FvH4_4g17850 FvH4_4g17850
malus_domestica	MD03G1283800.v1.1 MD13G1170000.v1.1 MD16G1171500.v1.1
prunus_persica	Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.8G255900_v2.0.a1
pyrus_communis	pycom13g14550 pycom16g14380
rosa_chinensis	RchiOBHm_Chr4g0421961
rosa_laevigata	RLG00000007650
rosa_multiflora	Rmu_co7962282.1_g000001 Rmu_sc0020808.1_g000003 Rmu_sc0021995.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364050
rosa_rugosa	Rorug04G0176500
rosa_samantha	Rh4AG235500 Rh4BG238800 Rh4CG250200 Rh4DG234300
rosa_wichuraiana	Rw4G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
Acc36I	ACCTGC	1 cut(s)	709
AccB1I	GGYRCC	1 cut(s)	411
AciI	CCGC	2 cut(s)	587, 810
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	5 cut(s)	210, 387, 434, 681, 724
AfiI	CCNNNNNNNGG	2 cut(s)	389, 814
AgsI	TTSAA	6 cut(s)	65, 79, 166, 408, 460, 541
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	4 cut(s)	317, 493, 509, 533
AluI	AGCT	4 cut(s)	317, 493, 509, 533
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	912
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	599
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	2 cut(s)	631, 878
BcoDI	GTCTC	1 cut(s)	912
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	2 cut(s)	12, 864
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	709
BfuI	GTATCC	2 cut(s)	631, 878
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmcAI	AGTACT	2 cut(s)	434, 724
Bme1390I	CCNGG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	326, 413
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	3 cut(s)	479, 772, 945
Bpu10I	CCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 814
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	936
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	389, 814
BseMII	CTCAG	3 cut(s)	680, 804, 864
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	706, 838
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	389, 814
BsmAI	GTCTC	1 cut(s)	912
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	912
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	249, 301, 613
BspACI	CCGC	2 cut(s)	587, 810
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	3 cut(s)	681, 805, 863
BspLI	GGNNCC	2 cut(s)	326, 413
BspMI	ACCTGC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	249, 301, 613
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	182, 572
Bst6I	CTCTTC	2 cut(s)	516, 762
BstACI	GRCGYC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	3 cut(s)	689, 813, 850
BstF5I	GGATG	1 cut(s)	936
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	252, 304, 616
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	3 cut(s)	249, 301, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	2 cut(s)	631, 878
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	936
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	1 cut(s)	495
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	5 cut(s)	209, 386, 433, 680, 723
CviAII	CATG	3 cut(s)	449, 653, 872
CviJI	RGCY	7 cut(s)	169, 224, 317, 325, 493, 509, 533
CviKI_1	RGCY	7 cut(s)	169, 224, 317, 325, 493, 509, 533
CviQI	GTAC	5 cut(s)	209, 386, 433, 680, 723
DdeI	CTNAG	3 cut(s)	689, 813, 850
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	3 cut(s)	251, 303, 615
DpnII	GATC	3 cut(s)	249, 301, 613
DraI	TTTAAA	2 cut(s)	628, 888
Eam1104I	CTCTTC	2 cut(s)	516, 762
EarI	CTCTTC	2 cut(s)	516, 762
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	912
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	452, 656, 875
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FatI	CATG	3 cut(s)	448, 652, 871
FauI	CCCGC	1 cut(s)	817
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	1 cut(s)	923
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	2 cut(s)	12, 864
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	3 cut(s)	452, 656, 875
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	4 cut(s)	440, 770, 845, 875
Hpy166II	GTNNAC	2 cut(s)	282, 698
Hpy188I	TCNGA	3 cut(s)	355, 853, 955
Hpy188III	TCNNGA	6 cut(s)	12, 33, 203, 457, 488, 842
Hpy8I	GTNNAC	2 cut(s)	282, 698
HpyAV	CCTTC	3 cut(s)	593, 670, 738
HpyCH4III	ACNGT	2 cut(s)	182, 572
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	44, 659, 785, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	689, 813, 850
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	452, 656, 875
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	249, 301, 613
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	479, 772, 945
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	12, 864
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	3 cut(s)	251, 303, 615
MboI	GATC	3 cut(s)	249, 301, 613
MboII	GAAGA	9 cut(s)	77, 354, 472, 515, 533, 728, 779, 800, 884
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	4 cut(s)	536, 630, 822, 925
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	779, 839
MnlI	CCTC	9 cut(s)	40, 241, 416, 445, 590, 684, 808, 811, 859
MseI	TTAA	5 cut(s)	83, 276, 557, 627, 887
MslI	CAYNNNNRTG	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	812
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	3 cut(s)	249, 301, 613
NlaIII	CATG	3 cut(s)	452, 656, 875
NlaIV	GGNNCC	2 cut(s)	326, 413
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	440, 875
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	2 cut(s)	778, 839
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	778, 839
Ppu21I	YACGTR	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	326, 413
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	5 cut(s)	210, 387, 434, 681, 724
RsaNI	GTAC	5 cut(s)	209, 386, 433, 680, 723
RseI	CAYNNNNRTG	1 cut(s)	343
SaqAI	TTAA	5 cut(s)	83, 276, 557, 627, 887
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	3 cut(s)	249, 301, 613
Sau96I	GGNCC	1 cut(s)	324
ScaI	AGTACT	2 cut(s)	434, 724
SchI	GAGTC	2 cut(s)	779, 839
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	599
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	479, 772, 945
SfoI	GGCGCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	4 cut(s)	536, 630, 822, 925
SsiI	CCGC	2 cut(s)	587, 810
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	12, 864
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	182, 572
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	296, 674, 843
TasI	AATT	4 cut(s)	536, 630, 822, 925
TatI	WGTACW	2 cut(s)	432, 722
TfiI	GAWTC	2 cut(s)	440, 875
Tru1I	TTAA	5 cut(s)	83, 276, 557, 627, 887
Tru9I	TTAA	5 cut(s)	83, 276, 557, 627, 887
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	6 cut(s)	516, 558, 635, 641, 780, 888
XapI	RAATTY	1 cut(s)	536
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	2 cut(s)	12, 864
ZrmI	AGTACT	2 cut(s)	434, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.