Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7962282.1

Orthogroup ID

OG0006481

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 503

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7962282.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

tttctgacaggtaacttccggctcagtaaagcccgttcaaacgatctcttctgggaagctgtttggccacgtttgcttgctagagggtggcactctgagcagcctaatcagggtcgctttgctaatgcttccaagcattcattggtctttcttcttcctgggattaagaagttctccagaaggaaactggtgaagggaagtcactattttgactcggtaagtgacgtgctcagcaaagttgcttctgacccagagctcctcgagtttgagacaggagcagataaagtttccacgagcaaggatgaaaatggttgggcccatgaaacaaagcctgatggtttcccaagccagcaacggcactgttatttgaaacctcgtacccccagtcgtggtacagataccatgaagttcactgttgtggatactagtctggcctatggtaaaacatgcaaggtgagggaactgagaagcttaccagtcgagttgaatacctccgtctccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.99

Weight (kDa)

9.66

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47820 AT2G47820
fragaria_vesca	FvH4_4g17850 FvH4_4g17850 FvH4_4g17850
malus_domestica	MD03G1283800.v1.1 MD13G1170000.v1.1 MD16G1171500.v1.1
prunus_persica	Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.8G255900_v2.0.a1
pyrus_communis	pycom13g14550 pycom16g14380
rosa_chinensis	RchiOBHm_Chr4g0421961
rosa_laevigata	RLG00000007650
rosa_multiflora	Rmu_co7962282.1_g000001 Rmu_sc0020808.1_g000003 Rmu_sc0021995.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364050
rosa_rugosa	Rorug04G0176500
rosa_samantha	Rh4AG235500 Rh4BG238800 Rh4CG250200 Rh4DG234300
rosa_wichuraiana	Rw4G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	65
AfaI	GTAC	2 cut(s)	379, 394
AfiI	CCNNNNNNNGG	2 cut(s)	110, 389
AgsI	TTSAA	3 cut(s)	39, 370, 487
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	157
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	3 cut(s)	59, 256, 471
AluI	AGCT	3 cut(s)	59, 256, 471
Alw21I	GWGCWC	2 cut(s)	231, 258
Alw26I	GTCTC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	65, 315, 432
ApaI	GGGCCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	100
AspS9I	GGNCC	2 cut(s)	315, 316
AsuHPI	GGTGA	2 cut(s)	202, 466
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	258, 319
BauI	CACGAG	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	231, 258
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	81, 426
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	315, 316
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 389
Bse1I	ACTGG	3 cut(s)	192, 384, 476
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	110, 389
BseMII	CTCAG	4 cut(s)	37, 87, 244, 455
BseNI	ACTGG	3 cut(s)	192, 384, 476
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	3 cut(s)	67, 317, 434
BsiHKAI	GWGCWC	2 cut(s)	231, 258
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	110, 389
BsmAI	GTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	67, 317, 434
BsoBI	CYCGRG	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	231, 258, 319
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	67, 317, 434
BspCNI	CTCAG	4 cut(s)	36, 88, 243, 456
BspLI	GGNNCC	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	192, 384, 476
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	362, 415
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	78, 350
BstDEI	CTNAG	4 cut(s)	23, 96, 230, 464
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 97
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	67, 317, 434
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	358, 411
Cac8I	GCNNGC	2 cut(s)	78, 350
Cfr13I	GGNCC	2 cut(s)	315, 316
Csp6I	GTAC	2 cut(s)	378, 393
CviAII	CATG	3 cut(s)	320, 403, 447
CviQI	GTAC	2 cut(s)	378, 393
DdeI	CTNAG	4 cut(s)	23, 96, 230, 464
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	258, 319
Eco53kI	GAGCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	2 cut(s)	258, 319
FaeI	CATG	3 cut(s)	323, 406, 450
FaiI	YATR	4 cut(s)	321, 404, 438, 448
FatI	CATG	3 cut(s)	319, 402, 446
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	258, 319
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	81, 426
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	67, 317, 434
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	3 cut(s)	323, 406, 450
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	202, 466
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	6, 97, 247
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	2 cut(s)	174, 187
HpyCH4III	ACNGT	2 cut(s)	362, 415
HpyCH4IV	ACGT	2 cut(s)	70, 225
HpyCH4V	TGCA	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 97
HpyF3I	CTNAG	4 cut(s)	23, 96, 230, 464
HpySE526I	ACGT	2 cut(s)	70, 225
Hsp92II	CATG	3 cut(s)	323, 406, 450
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	261, 275
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	81, 426
MaeII	ACGT	2 cut(s)	70, 225
MaeIII	GTNAC	3 cut(s)	11, 200, 221
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	40, 143, 146
MhlI	GDGCHC	3 cut(s)	231, 258, 319
MlsI	TGGCCA	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	77, 269, 384, 450, 502
Mox20I	TGGCCA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	67
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	67
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	73, 97
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	323, 406, 450
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	200, 221
NspI	RCATGY	1 cut(s)	450
OliI	CACNNNNGTG	1 cut(s)	416
PaeR7I	CTCGAG	1 cut(s)	260
PctI	GAATGC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	317
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	315, 316
PspXI	VCTCGAGB	1 cut(s)	260
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
RsaI	GTAC	2 cut(s)	379, 394
RsaNI	GTAC	2 cut(s)	378, 393
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	2 cut(s)	315, 316
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	3 cut(s)	231, 258, 319
SetI	ASST	9 cut(s)	13, 61, 73, 228, 258, 376, 456, 473, 494
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	425
SspMI	CTAG	2 cut(s)	81, 426
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	362, 415
TaiI	ACGT	2 cut(s)	73, 228
TaqI	TCGA	2 cut(s)	261, 480
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	365, 418
TseFI	GTSAC	2 cut(s)	200, 221
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	200, 221
TspDTI	ATGAA	4 cut(s)	129, 318, 336, 419
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	365, 418
XceI	RCATGY	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 184
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	2 cut(s)	81, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.