BEST Arabidopsis thaliana protein match is
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47820 AT2G47820 |
| fragaria_vesca | FvH4_4g17850 FvH4_4g17850 FvH4_4g17850 |
| malus_domestica | MD03G1283800.v1.1 MD13G1170000.v1.1 MD16G1171500.v1.1 |
| prunus_persica | Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.8G255900_v2.0.a1 |
| pyrus_communis | pycom13g14550 pycom16g14380 |
| rosa_chinensis | RchiOBHm_Chr4g0421961 |
| rosa_laevigata | RLG00000007650 |
| rosa_multiflora | Rmu_co7962282.1_g000001 Rmu_sc0020808.1_g000003 Rmu_sc0021995.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00364050 |
| rosa_rugosa | Rorug04G0176500 |
| rosa_samantha | Rh4AG235500 Rh4BG238800 Rh4CG250200 Rh4DG234300 |
| rosa_wichuraiana | Rw4G019920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1040 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1495 |
| AatII | GACGTC | 1 cut(s) | 2398 |
| Acc36I | ACCTGC | 1 cut(s) | 1040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2350 |
| AccBSI | CCGCTC | 1 cut(s) | 1614 |
| AccII | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| AciI | CCGC | 7 cut(s) | 130, 617, 1612, 2061, 2311, 2316, 2917 |
| AclWI | GGATC | 7 cut(s) | 493, 641, 839, 2149, 2162, 2335, 2541 |
| AcuI | CTGAAG | 4 cut(s) | 1803, 2124, 2202, 2511 |
| AcvI | CACGTG | 2 cut(s) | 318, 1315 |
| AcyI | GRCGYC | 2 cut(s) | 2055, 2395 |
| AfaI | GTAC | 8 cut(s) | 119, 744, 1453, 1942, 2566, 2662, 2874, 2980 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 677, 689, 1040, 1688, 2022, 2350, 2958 |
| AflIII | ACRYGT | 2 cut(s) | 865, 1314 |
| AhlI | ACTAGT | 1 cut(s) | 3011 |
| AjnI | CCWGG | 7 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 920, 952, 1887, 1919 |
| Alw21I | GWGCWC | 3 cut(s) | 2846, 2977, 2995 |
| Alw26I | GTCTC | 8 cut(s) | 664, 869, 1108, 1354, 1481, 2830, 2937, 3020 |
| AlwI | GGATC | 7 cut(s) | 493, 641, 839, 2149, 2162, 2335, 2541 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1826 |
| Ama87I | CYCGRG | 2 cut(s) | 1343, 2940 |
| AoxI | GGCC | 5 cut(s) | 246, 1274, 1643, 2376, 2960 |
| ApeKI | GCWGC | 6 cut(s) | 1678, 1933, 2324, 2484, 2765, 2815 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2186, 2218 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 534, 2074, 2447, 2637 |
| AspLEI | GCGC | 4 cut(s) | 88, 99, 2316, 2628 |
| AspS9I | GGNCC | 5 cut(s) | 619, 680, 1274, 2377, 2459 |
| AsuC2I | CCSGG | 2 cut(s) | 3020, 3043 |
| AsuHPI | GGTGA | 7 cut(s) | 677, 971, 1064, 1138, 1777, 2032, 2612 |
| AsuII | TTCGAA | 2 cut(s) | 255, 2165 |
| AvaI | CYCGRG | 2 cut(s) | 1343, 2940 |
| AvaII | GGWCC | 3 cut(s) | 619, 680, 2459 |
| BamHI | GGATCC | 1 cut(s) | 2154 |
| BanII | GRGCYC | 2 cut(s) | 2995, 3098 |
| BbrPI | CACGTG | 2 cut(s) | 318, 1315 |
| BbsI | GAAGAC | 1 cut(s) | 2499 |
| Bbv12I | GWGCWC | 3 cut(s) | 2846, 2977, 2995 |
| BbvI | GCAGC | 6 cut(s) | 1690, 1945, 2311, 2471, 2752, 2827 |
| BccI | CCATC | 8 cut(s) | 84, 475, 988, 1147, 1206, 2180, 2438, 2971 |
| BceAI | ACGGC | 2 cut(s) | 761, 2643 |
| BciT130I | CCWGG | 7 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968 |
| BciVI | GTATCC | 2 cut(s) | 1981, 3068 |
| BclI | TGATCA | 1 cut(s) | 2740 |
| BcnI | CCSGG | 2 cut(s) | 3020, 3043 |
| BcoDI | GTCTC | 8 cut(s) | 664, 869, 1108, 1354, 1481, 2830, 2937, 3020 |
| BcuI | ACTAGT | 1 cut(s) | 3011 |
| BfaI | CTAG | 9 cut(s) | 30, 677, 684, 1382, 1410, 1565, 2574, 2693, 3012 |
| BfmI | CTRYAG | 3 cut(s) | 1047, 1931, 2265 |
| BfuAI | ACCTGC | 1 cut(s) | 1040 |
| BfuI | GTATCC | 2 cut(s) | 1981, 3068 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2968 |
| BglII | AGATCT | 2 cut(s) | 1465, 2269 |
| BisI | GCNGC | 7 cut(s) | 1679, 1934, 2312, 2325, 2485, 2766, 2816 |
| BlpI | GCTNAGC | 2 cut(s) | 918, 1601 |
| BlsI | GCNGC | 7 cut(s) | 1680, 1935, 2313, 2326, 2486, 2767, 2817 |
| BmcAI | AGTACT | 1 cut(s) | 2566 |
| Bme1390I | CCNGG | 9 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968, 3020, 3043 |
| Bme18I | GGWCC | 3 cut(s) | 619, 680, 2459 |
| BmeT110I | CYCGRG | 2 cut(s) | 1343, 2940 |
| BmgT120I | GGNCC | 5 cut(s) | 619, 680, 1274, 2377, 2459 |
| BmiI | GGNNCC | 9 cut(s) | 1038, 1275, 1705, 2156, 2379, 2444, 2461, 2757, 3097 |
| BmrFI | CCNGG | 9 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968, 3020, 3043 |
| BmrI | ACTGGG | 1 cut(s) | 1596 |
| BmsI | GCATC | 7 cut(s) | 757, 2086, 2239, 2467, 2686, 2752, 2772 |
| BmuI | ACTGGG | 1 cut(s) | 1596 |
| BpiI | GAAGAC | 1 cut(s) | 2499 |
| BpmI | CTGGAG | 3 cut(s) | 1038, 1081, 2050 |
| Bpu10I | CCTNAGC | 3 cut(s) | 283, 672, 1827 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 918, 1601 |
| Bpu14I | TTCGAA | 2 cut(s) | 255, 2165 |
| BpuEI | CTTGAG | 3 cut(s) | 1600, 1856, 2511 |
| BpuMI | CCSGG | 2 cut(s) | 3020, 3043 |
| BsaAI | YACGTR | 2 cut(s) | 318, 1315 |
| BsaHI | GRCGYC | 2 cut(s) | 2055, 2395 |
| BsaI | GGTCTC | 2 cut(s) | 869, 1354 |
| BsaJI | CCNNGG | 9 cut(s) | 300, 350, 589, 793, 1177, 1277, 1732, 2016, 2868 |
| BsaWI | WCCGGW | 2 cut(s) | 1033, 2758 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 3080 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 677, 689, 1040, 1688, 2022, 2350, 2958 |
| Bse3DI | GCAATG | 2 cut(s) | 1476, 2829 |
| BseBI | CCWGG | 7 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968 |
| BseDI | CCNNGG | 9 cut(s) | 300, 350, 589, 793, 1177, 1277, 1732, 2016, 2868 |
| BseGI | GGATG | 9 cut(s) | 934, 2012, 2101, 2172, 2430, 2555, 2767, 2935, 2963 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 677, 689, 1040, 1688, 2022, 2350, 2958 |
| BseMI | GCAATG | 2 cut(s) | 1476, 2829 |
| BseMII | CTCAG | 7 cut(s) | 161, 663, 909, 1665, 1818, 2021, 2666 |
| BseRI | GAGGAG | 1 cut(s) | 1540 |
| BseXI | GCAGC | 6 cut(s) | 1690, 1945, 2311, 2471, 2752, 2827 |
| BseYI | CCCAGC | 1 cut(s) | 2435 |
| Bsh1236I | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| BshFI | GGCC | 5 cut(s) | 248, 1276, 1645, 2378, 2962 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2846, 2977, 2995 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1343, 2940 |
| BsiSI | CCGG | 6 cut(s) | 527, 1034, 1597, 2759, 3020, 3042 |
| BslFI | GGGAC | 2 cut(s) | 774, 2445 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 677, 689, 1040, 1688, 2022, 2350, 2958 |
| BsmAI | GTCTC | 8 cut(s) | 664, 869, 1108, 1354, 1481, 2830, 2937, 3020 |
| BsmFI | GGGAC | 2 cut(s) | 774, 2445 |
| BsmI | GAATGC | 4 cut(s) | 536, 1226, 1429, 1669 |
| BsnI | GGCC | 5 cut(s) | 248, 1276, 1645, 2378, 2962 |
| Bso31I | GGTCTC | 2 cut(s) | 869, 1354 |
| BsoBI | CYCGRG | 2 cut(s) | 1343, 2940 |
| Bsp119I | TTCGAA | 2 cut(s) | 255, 2165 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2846, 2977, 2995, 3098 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 918, 1601 |
| Bsp19I | CCATGG | 4 cut(s) | 350, 589, 793, 1177 |
| BspACI | CCGC | 7 cut(s) | 130, 617, 1612, 2061, 2311, 2316, 2917 |
| BspANI | GGCC | 5 cut(s) | 248, 1276, 1645, 2378, 2962 |
| BspCNI | CTCAG | 7 cut(s) | 160, 664, 910, 1666, 1819, 2022, 2665 |
| BspFNI | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| BspHI | TCATGA | 3 cut(s) | 274, 1968, 2641 |
| BspLI | GGNNCC | 9 cut(s) | 1038, 1275, 1705, 2156, 2379, 2444, 2461, 2757, 3097 |
| BspMAI | CTGCAG | 3 cut(s) | 1051, 1935, 2269 |
| BspMI | ACCTGC | 1 cut(s) | 1040 |
| BspPI | GGATC | 7 cut(s) | 493, 641, 839, 2149, 2162, 2335, 2541 |
| BspT104I | TTCGAA | 2 cut(s) | 255, 2165 |
| BspTNI | GGTCTC | 2 cut(s) | 869, 1354 |
| BsrBI | CCGCTC | 1 cut(s) | 1614 |
| BsrDI | GCAATG | 2 cut(s) | 1476, 2829 |
| BssECI | CCNNGG | 9 cut(s) | 300, 350, 589, 793, 1177, 1277, 1732, 2016, 2868 |
| BssNI | GRCGYC | 2 cut(s) | 2055, 2395 |
| BssT1I | CCWWGG | 7 cut(s) | 350, 589, 793, 1177, 1277, 2016, 2868 |
| Bst2UI | CCWGG | 7 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968 |
| Bst4CI | ACNGT | 6 cut(s) | 76, 1925, 1981, 2260, 3002, 3080 |
| Bst6I | CTCTTC | 3 cut(s) | 1317, 2538, 2915 |
| BstACI | GRCGYC | 2 cut(s) | 2055, 2395 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 776, 1545 |
| BstBAI | YACGTR | 2 cut(s) | 318, 1315 |
| BstBI | TTCGAA | 2 cut(s) | 255, 2165 |
| BstC8I | GCNNGC | 8 cut(s) | 307, 524, 1546, 1612, 2482, 2820, 2973, 3032 |
| BstDSI | CCRYGG | 4 cut(s) | 350, 589, 793, 1177 |
| BstEII | GGTNACC | 2 cut(s) | 665, 810 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 675, 1686 |
| BstF5I | GGATG | 9 cut(s) | 934, 2012, 2101, 2172, 2430, 2555, 2767, 2935, 2963 |
| BstFNI | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| BstHHI | GCGC | 4 cut(s) | 88, 99, 2316, 2628 |
| BstMAI | GTCTC | 8 cut(s) | 664, 869, 1108, 1354, 1481, 2830, 2937, 3020 |
| BstNI | CCWGG | 7 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968 |
| BstNSI | RCATGY | 6 cut(s) | 869, 1548, 2311, 2484, 2683, 3034 |
| BstPI | GGTNACC | 2 cut(s) | 665, 810 |
| BstSCI | CCNGG | 9 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966, 3018, 3041 |
| BstSFI | CTRYAG | 3 cut(s) | 1047, 1931, 2265 |
| BstUI | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| BstV1I | GCAGC | 6 cut(s) | 1690, 1945, 2311, 2471, 2752, 2827 |
| BstV2I | GAAGAC | 1 cut(s) | 2499 |
| BstX2I | RGATCY | 5 cut(s) | 1465, 2154, 2269, 2340, 2533 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 828, 2179, 2875 |
| BstYI | RGATCY | 5 cut(s) | 1465, 2154, 2269, 2340, 2533 |
| BsuI | GTATCC | 2 cut(s) | 1981, 3068 |
| BsuRI | GGCC | 5 cut(s) | 248, 1276, 1645, 2378, 2962 |
| BtgI | CCRYGG | 4 cut(s) | 350, 589, 793, 1177 |
| BtgZI | GCGATG | 3 cut(s) | 103, 1173, 2205 |
| BtsCI | GGATG | 9 cut(s) | 934, 2012, 2101, 2172, 2430, 2555, 2767, 2935, 2963 |
| BtsI | GCAGTG | 1 cut(s) | 1446 |
| BtsIMutI | CAGTG | 7 cut(s) | 502, 1446, 1698, 1921, 2660, 2858, 3085 |
| BveI | ACCTGC | 1 cut(s) | 1040 |
| Cac8I | GCNNGC | 8 cut(s) | 307, 524, 1546, 1612, 2482, 2820, 2973, 3032 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1826 |
| CciI | TCATGA | 3 cut(s) | 274, 1968, 2641 |
| CfoI | GCGC | 4 cut(s) | 88, 99, 2316, 2628 |
| Cfr13I | GGNCC | 5 cut(s) | 619, 680, 1274, 2377, 2459 |
| CseI | GACGC | 1 cut(s) | 2063 |
| Csp6I | GTAC | 8 cut(s) | 118, 743, 1452, 1941, 2565, 2661, 2873, 2979 |
| CviQI | GTAC | 8 cut(s) | 118, 743, 1452, 1941, 2565, 2661, 2873, 2979 |
| DraI | TTTAAA | 4 cut(s) | 753, 1404, 1494, 2388 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1495 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1495 |
| Eam1104I | CTCTTC | 3 cut(s) | 1317, 2538, 2915 |
| EarI | CTCTTC | 3 cut(s) | 1317, 2538, 2915 |
| EciI | GGCGGA | 1 cut(s) | 2050 |
| Ecl136II | GAGCTC | 1 cut(s) | 2993 |
| Eco130I | CCWWGG | 7 cut(s) | 350, 589, 793, 1177, 1277, 2016, 2868 |
| Eco24I | GRGCYC | 2 cut(s) | 2995, 3098 |
| Eco31I | GGTCTC | 2 cut(s) | 869, 1354 |
| Eco32I | GATATC | 1 cut(s) | 598 |
| Eco47I | GGWCC | 3 cut(s) | 619, 680, 2459 |
| Eco53kI | GAGCTC | 1 cut(s) | 2993 |
| Eco57I | CTGAAG | 4 cut(s) | 1803, 2124, 2202, 2511 |
| Eco72I | CACGTG | 2 cut(s) | 318, 1315 |
| Eco88I | CYCGRG | 2 cut(s) | 1343, 2940 |
| Eco91I | GGTNACC | 2 cut(s) | 665, 810 |
| EcoICRI | GAGCTC | 1 cut(s) | 2993 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 675, 1686 |
| EcoO109I | RGGNCCY | 2 cut(s) | 680, 2459 |
| EcoO65I | GGTNACC | 2 cut(s) | 665, 810 |
| EcoRI | GAATTC | 2 cut(s) | 496, 1711 |
| EcoRII | CCWGG | 7 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966 |
| EcoRV | GATATC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 7 cut(s) | 350, 589, 793, 1177, 1277, 2016, 2868 |
| EcoT22I | ATGCAT | 2 cut(s) | 1008, 2482 |
| EcoT38I | GRGCYC | 2 cut(s) | 2995, 3098 |
| ErhI | CCWWGG | 7 cut(s) | 350, 589, 793, 1177, 1277, 2016, 2868 |
| FaqI | GGGAC | 2 cut(s) | 774, 2445 |
| FauI | CCCGC | 2 cut(s) | 1619, 2309 |
| FbaI | TGATCA | 1 cut(s) | 2740 |
| Fnu4HI | GCNGC | 7 cut(s) | 1679, 1934, 2312, 2325, 2485, 2766, 2816 |
| FokI | GGATG | 9 cut(s) | 941, 1999, 2108, 2159, 2417, 2542, 2774, 2942, 2950 |
| FriOI | GRGCYC | 2 cut(s) | 2995, 3098 |
| Fsp4HI | GCNGC | 7 cut(s) | 1679, 1934, 2312, 2325, 2485, 2766, 2816 |
| FspBI | CTAG | 9 cut(s) | 30, 677, 684, 1382, 1410, 1565, 2574, 2693, 3012 |
| GlaI | GCGC | 4 cut(s) | 87, 98, 2315, 2627 |
| GluI | GCNGC | 7 cut(s) | 1679, 1934, 2312, 2325, 2485, 2766, 2816 |
| GsaI | CCCAGC | 1 cut(s) | 2439 |
| GsuI | CTGGAG | 3 cut(s) | 1038, 1081, 2050 |
| HaeIII | GGCC | 5 cut(s) | 248, 1276, 1645, 2378, 2962 |
| HapII | CCGG | 6 cut(s) | 527, 1034, 1597, 2759, 3020, 3042 |
| HgaI | GACGC | 1 cut(s) | 2063 |
| HhaI | GCGC | 4 cut(s) | 88, 99, 2316, 2628 |
| Hin1I | GRCGYC | 2 cut(s) | 2055, 2395 |
| Hin6I | GCGC | 4 cut(s) | 86, 97, 2314, 2626 |
| HinP1I | GCGC | 4 cut(s) | 86, 97, 2314, 2626 |
| HincII | GTYRAC | 1 cut(s) | 1576 |
| HindII | GTYRAC | 1 cut(s) | 1576 |
| HindIII | AAGCTT | 4 cut(s) | 639, 2035, 2106, 2235 |
| HpaII | CCGG | 6 cut(s) | 527, 1034, 1597, 2759, 3020, 3042 |
| HphI | GGTGA | 7 cut(s) | 677, 971, 1064, 1138, 1777, 2032, 2612 |
| Hpy166II | GTNNAC | 7 cut(s) | 1148, 1576, 1652, 1872, 1977, 2147, 3083 |
| Hpy8I | GTNNAC | 7 cut(s) | 1148, 1576, 1652, 1872, 1977, 2147, 3083 |
| Hpy99I | CGWCG | 1 cut(s) | 2400 |
| HpyAV | CCTTC | 7 cut(s) | 262, 354, 442, 572, 1361, 1762, 2597 |
| HpyCH4III | ACNGT | 6 cut(s) | 76, 1925, 1981, 2260, 3002, 3080 |
| HpyCH4IV | ACGT | 5 cut(s) | 317, 953, 1314, 2395, 2611 |
| HpySE526I | ACGT | 5 cut(s) | 317, 953, 1314, 2395, 2611 |
| Hsp92I | GRCGYC | 2 cut(s) | 2055, 2395 |
| HspAI | GCGC | 4 cut(s) | 86, 97, 2314, 2626 |
| Ksp22I | TGATCA | 1 cut(s) | 2740 |
| LmnI | GCTCC | 7 cut(s) | 1516, 1553, 1850, 2227, 2990, 2998, 3101 |
| Lsp1109I | GCAGC | 6 cut(s) | 1690, 1945, 2311, 2471, 2752, 2827 |
| LweI | GCATC | 7 cut(s) | 757, 2086, 2239, 2467, 2686, 2752, 2772 |
| MaeI | CTAG | 9 cut(s) | 30, 677, 684, 1382, 1410, 1565, 2574, 2693, 3012 |
| MaeII | ACGT | 5 cut(s) | 317, 953, 1314, 2395, 2611 |
| MaeIII | GTNAC | 8 cut(s) | 44, 80, 665, 810, 896, 1052, 2260, 2466 |
| MbiI | CCGCTC | 1 cut(s) | 1614 |
| MboII | GAAGA | 9 cut(s) | 1079, 1085, 1141, 1334, 1397, 2099, 2504, 2555, 2932 |
| MfeI | CAATTG | 1 cut(s) | 762 |
| MflI | RGATCY | 5 cut(s) | 1465, 2154, 2269, 2340, 2533 |
| MhlI | GDGCHC | 4 cut(s) | 2846, 2977, 2995, 3098 |
| MlyI | GAGTC | 2 cut(s) | 971, 1110 |
| MmeI | TCCRAC | 2 cut(s) | 670, 1396 |
| Mph1103I | ATGCAT | 2 cut(s) | 1008, 2482 |
| MroXI | GAANNNNTTC | 4 cut(s) | 534, 2074, 2447, 2637 |
| MspA1I | CMGCKG | 2 cut(s) | 617, 1059 |
| MspI | CCGG | 6 cut(s) | 527, 1034, 1597, 2759, 3020, 3042 |
| MspR9I | CCNGG | 9 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968, 3020, 3043 |
| MunI | CAATTG | 1 cut(s) | 762 |
| Mva1269I | GAATGC | 4 cut(s) | 536, 1226, 1429, 1669 |
| MvaI | CCWGG | 7 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968 |
| MvnI | CGCG | 5 cut(s) | 86, 88, 99, 2316, 2628 |
| NciI | CCSGG | 2 cut(s) | 3020, 3043 |
| NcoI | CCATGG | 4 cut(s) | 350, 589, 793, 1177 |
| NlaIV | GGNNCC | 9 cut(s) | 1038, 1275, 1705, 2156, 2379, 2444, 2461, 2757, 3097 |
| NmuCI | GTSAC | 5 cut(s) | 80, 665, 896, 1052, 2260 |
| NsiI | ATGCAT | 2 cut(s) | 1008, 2482 |
| NspI | RCATGY | 6 cut(s) | 869, 1548, 2311, 2484, 2683, 3034 |
| NspV | TTCGAA | 2 cut(s) | 255, 2165 |
| PaeI | GCATGC | 3 cut(s) | 1548, 2484, 3034 |
| PaeR7I | CTCGAG | 1 cut(s) | 1343 |
| PagI | TCATGA | 3 cut(s) | 274, 1968, 2641 |
| PaqCI | CACCTGC | 1 cut(s) | 1040 |
| PciI | ACATGT | 1 cut(s) | 865 |
| PctI | GAATGC | 4 cut(s) | 536, 1226, 1429, 1669 |
| PdmI | GAANNNNTTC | 4 cut(s) | 534, 2074, 2447, 2637 |
| PfeI | GAWTC | 8 cut(s) | 420, 569, 611, 1787, 2075, 2135, 2647, 2879 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2350 |
| PfoI | TCCNGGA | 1 cut(s) | 3018 |
| PkrI | GCNGC | 7 cut(s) | 1680, 1935, 2313, 2326, 2486, 2767, 2817 |
| PleI | GAGTC | 2 cut(s) | 970, 1110 |
| PmaCI | CACGTG | 2 cut(s) | 318, 1315 |
| PmlI | CACGTG | 2 cut(s) | 318, 1315 |
| PpsI | GAGTC | 2 cut(s) | 970, 1110 |
| Ppu21I | YACGTR | 2 cut(s) | 318, 1315 |
| PpuMI | RGGWCCY | 2 cut(s) | 680, 2459 |
| PscI | ACATGT | 1 cut(s) | 865 |
| Psp124BI | GAGCTC | 1 cut(s) | 2995 |
| Psp5II | RGGWCCY | 2 cut(s) | 680, 2459 |
| Psp6I | CCWGG | 7 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966 |
| PspCI | CACGTG | 2 cut(s) | 318, 1315 |
| PspEI | GGTNACC | 2 cut(s) | 665, 810 |
| PspFI | CCCAGC | 1 cut(s) | 2435 |
| PspGI | CCWGG | 7 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966 |
| PspN4I | GGNNCC | 9 cut(s) | 1038, 1275, 1705, 2156, 2379, 2444, 2461, 2757, 3097 |
| PspPI | GGNCC | 5 cut(s) | 619, 680, 1274, 2377, 2459 |
| PspPPI | RGGWCCY | 2 cut(s) | 680, 2459 |
| PspXI | VCTCGAGB | 1 cut(s) | 1343 |
| PstI | CTGCAG | 3 cut(s) | 1051, 1935, 2269 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1826 |
| PsuI | RGATCY | 5 cut(s) | 1465, 2154, 2269, 2340, 2533 |
| PvuII | CAGCTG | 1 cut(s) | 1059 |
| RsaI | GTAC | 8 cut(s) | 119, 744, 1453, 1942, 2566, 2662, 2874, 2980 |
| RsaNI | GTAC | 8 cut(s) | 118, 743, 1452, 1941, 2565, 2661, 2873, 2979 |
| SacI | GAGCTC | 1 cut(s) | 2995 |
| SatI | GCNGC | 7 cut(s) | 1679, 1934, 2312, 2325, 2485, 2766, 2816 |
| Sau96I | GGNCC | 5 cut(s) | 619, 680, 1274, 2377, 2459 |
| ScaI | AGTACT | 1 cut(s) | 2566 |
| SchI | GAGTC | 2 cut(s) | 971, 1110 |
| ScrFI | CCNGG | 9 cut(s) | 302, 704, 1017, 1041, 1689, 1734, 2968, 3020, 3043 |
| SduI | GDGCHC | 4 cut(s) | 2846, 2977, 2995, 3098 |
| SfaNI | GCATC | 7 cut(s) | 757, 2086, 2239, 2467, 2686, 2752, 2772 |
| SfcI | CTRYAG | 3 cut(s) | 1047, 1931, 2265 |
| Sfr274I | CTCGAG | 1 cut(s) | 1343 |
| SfuI | TTCGAA | 2 cut(s) | 255, 2165 |
| SinI | GGWCC | 3 cut(s) | 619, 680, 2459 |
| SlaI | CTCGAG | 1 cut(s) | 1343 |
| SmlI | CTYRAG | 4 cut(s) | 1343, 1615, 1835, 2526 |
| SmoI | CTYRAG | 4 cut(s) | 1343, 1615, 1835, 2526 |
| SpeI | ACTAGT | 1 cut(s) | 3011 |
| SphI | GCATGC | 3 cut(s) | 1548, 2484, 3034 |
| SsiI | CCGC | 7 cut(s) | 130, 617, 1612, 2061, 2311, 2316, 2917 |
| SspMI | CTAG | 9 cut(s) | 30, 677, 684, 1382, 1410, 1565, 2574, 2693, 3012 |
| SstI | GAGCTC | 1 cut(s) | 2995 |
| StyD4I | CCNGG | 9 cut(s) | 300, 702, 1015, 1039, 1687, 1732, 2966, 3018, 3041 |
| StyI | CCWWGG | 7 cut(s) | 350, 589, 793, 1177, 1277, 2016, 2868 |
| TaaI | ACNGT | 6 cut(s) | 76, 1925, 1981, 2260, 3002, 3080 |
| TaiI | ACGT | 5 cut(s) | 320, 956, 1317, 2398, 2614 |
| TaqI | TCGA | 5 cut(s) | 255, 1344, 2165, 2398, 2901 |
| TatI | WGTACW | 1 cut(s) | 2564 |
| TauI | GCSGC | 1 cut(s) | 2314 |
| TfiI | GAWTC | 8 cut(s) | 420, 569, 611, 1787, 2075, 2135, 2647, 2879 |
| TscAI | CASTG | 7 cut(s) | 509, 1446, 1705, 1928, 2660, 2865, 3085 |
| TseFI | GTSAC | 5 cut(s) | 80, 665, 896, 1052, 2260 |
| TseI | GCWGC | 6 cut(s) | 1678, 1933, 2324, 2484, 2765, 2815 |
| Tsp45I | GTSAC | 5 cut(s) | 80, 665, 896, 1052, 2260 |
| TspGWI | ACGGA | 3 cut(s) | 639, 2147, 3087 |
| TspRI | CASTG | 7 cut(s) | 509, 1446, 1705, 1928, 2660, 2865, 3085 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2350 |
| VpaK11BI | GGWCC | 3 cut(s) | 619, 680, 2459 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 675, 1686 |
| XbaI | TCTAGA | 1 cut(s) | 2692 |
| XceI | RCATGY | 6 cut(s) | 869, 1548, 2311, 2484, 2683, 3034 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1714, 2872 |
| XhoI | CTCGAG | 1 cut(s) | 1343 |
| XmnI | GAANNNNTTC | 4 cut(s) | 534, 2074, 2447, 2637 |
| XspI | CTAG | 9 cut(s) | 30, 677, 684, 1382, 1410, 1565, 2574, 2693, 3012 |
| ZraI | GACGTC | 1 cut(s) | 2396 |
| ZrmI | AGTACT | 1 cut(s) | 2566 |
| Zsp2I | ATGCAT | 2 cut(s) | 1008, 2482 |