Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021995.1

Orthogroup ID

OG0006481

Physical Location & Seq

Genomic Coordinates Forward (+)

1160 .. 3006

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021995.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 989 bp

atggattcagttgaaggaaataaccatgtcgattatactgaggatgaatctgctgagcattctttttctccagaagccgtggagttaaatggtgtggatggtgagcctgagatacttcctagagttggagaagagtaccaggttgaacttccccctctaatggctgtatctgattatctctgccgtctagagaaccaaactgatgcagaaagcacagatagtagttcatacagatttcagttgggattgccactaccagtaatgtggatcaatgagcaagttgagtgtaaaaaacatgaatccgatgtgggttttaatgatgcagttgacgtggcccataaaaatgagtctctaagatctgaatatgtcagtgggttggttgtttcagaaagggacagctttaaatgcaaagctgagcccatggatgttgagtcagatcagggaataattttgaacgagtctgcgaagttggatgtgaaacaggaaatgataatgcctgaaaatcaaaatggatgtccggttcctggtacctcgagtgttagttggagtcacatagaagaagccagttttcttcttggtttatatatctttgggaaggaccttgttctggtgacaaaattcgttggtagtaaacagatgggagatatattatcattctactatgggatcttttacaagtctaaaagctacagcaggtggtcagaatgcaagaaaatgagaagcagaaaatgtatatttggacaaagaatatttacaggattaaggcaacatgagttgttatctcgtttgcgtcctcatgtgttagaagagtgccaaaatactttacttgaggtctcaaagacatttggggaaggaaagatattactagaagaatatgtattcattctaaaatctagagttggattggatgctcttgtggaggcagtgggaattggtaaagggaagcaagatctcacaggcattgccatggagaccccaaagtccaatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.96

Weight (kDa)

4.82

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47820 AT2G47820
fragaria_vesca	FvH4_4g17850 FvH4_4g17850 FvH4_4g17850
malus_domestica	MD03G1283800.v1.1 MD13G1170000.v1.1 MD16G1171500.v1.1
prunus_persica	Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.1G138300_v2.0.a1 Prupe.8G255900_v2.0.a1
pyrus_communis	pycom13g14550 pycom16g14380
rosa_chinensis	RchiOBHm_Chr4g0421961
rosa_laevigata	RLG00000007650
rosa_multiflora	Rmu_co7962282.1_g000001 Rmu_sc0020808.1_g000003 Rmu_sc0021995.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364050
rosa_rugosa	Rorug04G0176500
rosa_samantha	Rh4AG235500 Rh4BG238800 Rh4CG250200 Rh4DG234300
rosa_wichuraiana	Rw4G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	684
AasI	GACNNNNNNGTC	1 cut(s)	979
Acc36I	ACCTGC	1 cut(s)	684
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AclWI	GGATC	2 cut(s)	275, 674
AcsI	RAATTY	1 cut(s)	617
AfaI	GTAC	2 cut(s)	137, 529
AfiI	CCNNNNNNNGG	4 cut(s)	125, 160, 524, 607
AgsI	TTSAA	3 cut(s)	14, 146, 454
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	138, 523
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	399, 413, 687
AluI	AGCT	3 cut(s)	399, 413, 687
Alw26I	GTCTC	3 cut(s)	354, 838, 965
AlwI	GGATC	2 cut(s)	275, 674
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
Asp718I	GGTACC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	334, 598
AsuHPI	GGTGA	2 cut(s)	113, 622
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	420
BccI	CCATC	2 cut(s)	92, 631
BceAI	ACGGC	2 cut(s)	62, 168
BciT130I	CCWGG	2 cut(s)	140, 525
BcoDI	GTCTC	3 cut(s)	354, 838, 965
BfaI	CTAG	4 cut(s)	120, 188, 866, 894
BfmI	CTRYAG	1 cut(s)	688
BfuAI	ACCTGC	1 cut(s)	684
BglII	AGATCT	2 cut(s)	356, 949
BlpI	GCTNAGC	2 cut(s)	54, 414
Bme1390I	CCNGG	2 cut(s)	140, 525
Bme18I	GGWCC	1 cut(s)	598
BmeT110I	CYCGRG	1 cut(s)	532
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	334, 598
BmiI	GGNNCC	2 cut(s)	522, 529
BmrFI	CCNGG	2 cut(s)	140, 525
BmsI	GCATC	3 cut(s)	193, 310, 898
BpmI	CTGGAG	1 cut(s)	54
Bpu1102I	GCTNAGC	2 cut(s)	54, 414
BpuEI	CTTGAG	1 cut(s)	848
BsaI	GGTCTC	2 cut(s)	838, 965
BsaJI	CCNNGG	3 cut(s)	78, 420, 966
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 160, 524, 607
Bse1I	ACTGG	2 cut(s)	257, 564
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	2 cut(s)	140, 525
BseDI	CCNNGG	3 cut(s)	78, 420, 966
BseGI	GGATG	6 cut(s)	49, 103, 430, 478, 518, 913
BseLI	CCNNNNNNNGG	4 cut(s)	125, 160, 524, 607
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	30, 45, 99, 405
BseNI	ACTGG	2 cut(s)	257, 564
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	125, 160, 524, 607
BsmAI	GTCTC	3 cut(s)	354, 838, 965
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	2 cut(s)	58, 710
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	2 cut(s)	838, 965
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	5 cut(s)	267, 356, 436, 666, 949
Bsp1720I	GCTNAGC	2 cut(s)	54, 414
Bsp19I	CCATGG	2 cut(s)	420, 966
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	31, 46, 100, 406
BspLI	GGNNCC	2 cut(s)	522, 529
BspMI	ACCTGC	1 cut(s)	684
BspPI	GGATC	2 cut(s)	275, 674
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	2 cut(s)	838, 965
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	257, 564
BssECI	CCNNGG	3 cut(s)	78, 420, 966
BssMI	GATC	5 cut(s)	267, 356, 436, 666, 949
BssT1I	CCWWGG	2 cut(s)	420, 966
Bst2UI	CCWGG	2 cut(s)	140, 525
Bst6I	CTCTTC	2 cut(s)	126, 801
BstDEI	CTNAG	5 cut(s)	39, 54, 108, 353, 414
BstDSI	CCRYGG	3 cut(s)	78, 420, 966
BstF5I	GGATG	6 cut(s)	49, 103, 430, 478, 518, 913
BstKTI	GATC	5 cut(s)	270, 359, 439, 669, 952
BstMAI	GTCTC	3 cut(s)	354, 838, 965
BstMBI	GATC	5 cut(s)	267, 356, 436, 666, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	2 cut(s)	140, 525
BstSCI	CCNGG	2 cut(s)	138, 523
BstSFI	CTRYAG	1 cut(s)	688
BstX2I	RGATCY	3 cut(s)	356, 666, 949
BstXI	CCANNNNNNTGG	1 cut(s)	264
BstYI	RGATCY	3 cut(s)	356, 666, 949
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	3 cut(s)	78, 420, 966
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	6 cut(s)	49, 103, 430, 478, 518, 913
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	2 cut(s)	376, 930
BveI	ACCTGC	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	334, 598
CseI	GACGC	1 cut(s)	779
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	136, 528
CviAII	CATG	6 cut(s)	26, 296, 421, 770, 797, 967
CviJI	RGCY	9 cut(s)	77, 106, 164, 335, 399, 413, 418, 563, 687
CviKI_1	RGCY	9 cut(s)	77, 106, 164, 335, 399, 413, 418, 563, 687
CviQI	GTAC	2 cut(s)	136, 528
DdeI	CTNAG	5 cut(s)	39, 54, 108, 353, 414
DpnI	GATC	5 cut(s)	269, 358, 438, 668, 951
DpnII	GATC	5 cut(s)	267, 356, 436, 666, 949
DraI	TTTAAA	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	979
DseDI	GACNNNNNNGTC	1 cut(s)	979
Eam1104I	CTCTTC	2 cut(s)	126, 801
EarI	CTCTTC	2 cut(s)	126, 801
Eco130I	CCWWGG	2 cut(s)	420, 966
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	838, 965
Eco47I	GGWCC	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	138, 523
EcoT14I	CCWWGG	2 cut(s)	420, 966
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	420, 966
FaeI	CATG	6 cut(s)	29, 299, 424, 773, 800, 970
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	6 cut(s)	25, 295, 420, 769, 796, 966
FokI	GGATG	6 cut(s)	56, 110, 437, 485, 525, 920
FriOI	GRGCYC	1 cut(s)	420
FspBI	CTAG	4 cut(s)	120, 188, 866, 894
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	779
Hin1II	CATG	6 cut(s)	29, 299, 424, 773, 800, 970
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	7 cut(s)	5, 47, 299, 347, 431, 458, 547
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	2 cut(s)	113, 622
Hpy166II	GTNNAC	2 cut(s)	328, 632
Hpy188I	TCNGA	6 cut(s)	172, 304, 361, 388, 436, 703
Hpy188III	TCNNGA	3 cut(s)	71, 188, 894
Hpy8I	GTNNAC	2 cut(s)	328, 632
HpyAV	CCTTC	3 cut(s)	8, 589, 845
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	206, 323, 408, 708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	5 cut(s)	39, 54, 108, 353, 414
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	6 cut(s)	29, 299, 424, 773, 800, 970
KpnI	GGTACC	1 cut(s)	531
Kzo9I	GATC	5 cut(s)	267, 356, 436, 666, 949
LweI	GCATC	3 cut(s)	193, 310, 898
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	4 cut(s)	120, 188, 866, 894
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	548, 610
MalI	GATC	5 cut(s)	269, 358, 438, 668, 951
MboI	GATC	5 cut(s)	267, 356, 436, 666, 949
MboII	GAAGA	5 cut(s)	143, 563, 569, 818, 881
MflI	RGATCY	3 cut(s)	356, 666, 949
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	447, 617, 930
MlyI	GAGTC	4 cut(s)	356, 440, 467, 556
MmeI	TCCRAC	4 cut(s)	106, 450, 524, 880
MnlI	CCTC	6 cut(s)	34, 165, 541, 804, 823, 913
MseI	TTAA	4 cut(s)	86, 315, 402, 761
MslI	CAYNNNNRTG	2 cut(s)	342, 965
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	140, 525
Mva1269I	GAATGC	2 cut(s)	58, 710
MvaI	CCWGG	2 cut(s)	140, 525
MwoI	GCNNNNNNNGC	1 cut(s)	405
NcoI	CCATGG	2 cut(s)	420, 966
NdeII	GATC	5 cut(s)	267, 356, 436, 666, 949
NlaIII	CATG	6 cut(s)	29, 299, 424, 773, 800, 970
NlaIV	GGNNCC	2 cut(s)	522, 529
NmuCI	GTSAC	2 cut(s)	548, 610
PaeR7I	CTCGAG	1 cut(s)	532
PaqCI	CACCTGC	1 cut(s)	684
PctI	GAATGC	2 cut(s)	58, 710
PfeI	GAWTC	3 cut(s)	5, 47, 299
PleI	GAGTC	4 cut(s)	355, 439, 466, 555
PpsI	GAGTC	4 cut(s)	355, 439, 466, 555
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	138, 523
PspGI	CCWGG	2 cut(s)	138, 523
PspN4I	GGNNCC	2 cut(s)	522, 529
PspPI	GGNCC	2 cut(s)	334, 598
PspPPI	RGGWCCY	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	532
PsuI	RGATCY	3 cut(s)	356, 666, 949
RsaI	GTAC	2 cut(s)	137, 529
RsaNI	GTAC	2 cut(s)	136, 528
RseI	CAYNNNNRTG	2 cut(s)	342, 965
SaqAI	TTAA	4 cut(s)	86, 315, 402, 761
Sau3AI	GATC	5 cut(s)	267, 356, 436, 666, 949
Sau96I	GGNCC	2 cut(s)	334, 598
SchI	GAGTC	4 cut(s)	356, 440, 467, 556
ScrFI	CCNGG	2 cut(s)	140, 525
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	9 cut(s)	144, 333, 401, 415, 533, 603, 689, 698, 834
SexAI	ACCWGGT	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	193, 310, 898
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	532
SmiMI	CAYNNNNRTG	2 cut(s)	342, 965
SmlI	CTYRAG	2 cut(s)	532, 827
SmoI	CTYRAG	2 cut(s)	532, 827
Sse9I	AATT	3 cut(s)	447, 617, 930
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	4 cut(s)	120, 188, 866, 894
StyD4I	CCNGG	2 cut(s)	138, 523
StyI	CCWWGG	2 cut(s)	420, 966
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	30, 533
TasI	AATT	3 cut(s)	447, 617, 930
TfiI	GAWTC	3 cut(s)	5, 47, 299
Tru1I	TTAA	4 cut(s)	86, 315, 402, 761
Tru9I	TTAA	4 cut(s)	86, 315, 402, 761
TscAI	CASTG	2 cut(s)	376, 930
TseFI	GTSAC	2 cut(s)	548, 610
Tsp45I	GTSAC	2 cut(s)	548, 610
TspDTI	ATGAA	4 cut(s)	60, 216, 312, 871
TspRI	CASTG	2 cut(s)	376, 930
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	617
XbaI	TCTAGA	2 cut(s)	187, 893
XhoI	CTCGAG	1 cut(s)	532
XspI	CTAG	4 cut(s)	120, 188, 866, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.