Rorug04G0176500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006481
Physical Location & Seq
Reverse (-)
31033691 .. 31034301
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0176500.1

Sequence Viewer

Length: 558 bp
ATGCAGAGTCTGGAGATACTTAATATATCCCACAACAATCTTTCTGGTTTCCTTCCAAGAAGTATGGAAGACATGCATGGGCTAATGTATGTTGACATATCCAACAATCACTTGGAAGGTCCCCTTCCCAACATCAAAGCATTTCAAGCTGCTTCTCCAGAAGCATTGCAGAGCAACAAGGGCTTGTGTGGCAACTCAAGTTTTTTGCGACTATACAATAATGAAAGCCCGAAAAAGGACCACAAACTCATACTTTTGATGATCTTCCTTGTTCTTGGAGAAATTGCACTTCTAGCCTTTATATTTGCTTTTGTAGCAAAAAGGAAAAAGAAGCATCAACATCTAACAAAAAAAAACAGGGATGACAAAATTTCTTTTTCAATAGTGAAGTTTGATGGGAAGACGATGGAAGGGAGAACATGGAACTGTCTACAAAGCAACTTGTCAAATGCTAACACAGTAGCTGTGAAGAAACTCCATCTGTTATGCGCTGATGATGAGAGTCTTCAAAAGGAATTCTTGAATGAAATCAGGGCACTAACTGAGATGCAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

8.96

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 1 - 38 2.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 369, 515
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 146, 381, 509, 523
AluBI AGCT 2 cut(s) 149, 464
AluI AGCT 2 cut(s) 149, 464
AlwNI CAGNNNCTG 2 cut(s) 10, 464
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 369, 515
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 119, 238
AvaII GGWCC 2 cut(s) 119, 238
BaeGI GKGCMC 1 cut(s) 538
BbsI GAAGAC 3 cut(s) 75, 407, 497
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 389, 400, 486
BfaI CTAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 119, 238
BmgT120I GGNCC 2 cut(s) 119, 238
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 2 cut(s) 343, 537
BpiI GAAGAC 3 cut(s) 75, 407, 497
BpmI CTGGAG 2 cut(s) 32, 141
BpuEI CTTGAG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 164
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 1 cut(s) 136
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 164
BssMI GATC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 428, 460
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 146, 180, 189, 293, 314
BstNSI RCATGY 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 3 cut(s) 75, 407, 497
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 553
CaiI CAGNNNCTG 2 cut(s) 10, 464
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 119, 238
CviAII CATG 3 cut(s) 73, 77, 420
CviJI RGCY 6 cut(s) 82, 149, 183, 228, 296, 464
CviKI_1 RGCY 6 cut(s) 82, 149, 183, 228, 296, 464
DdeI CTNAG 1 cut(s) 543
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 119, 238
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 78
FaeI CATG 3 cut(s) 76, 80, 423
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 503, 535
FaqI GGGAC 1 cut(s) 105
FatI CATG 3 cut(s) 72, 76, 419
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 490
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 2 cut(s) 32, 141
HhaI GCGC 1 cut(s) 491
Hin1II CATG 3 cut(s) 76, 80, 423
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 7, 502
Hpy166II GTNNAC 2 cut(s) 94, 431
Hpy188III TCNNGA 3 cut(s) 11, 158, 520
Hpy8I GTNNAC 2 cut(s) 94, 431
HpyAV CCTTC 4 cut(s) 62, 110, 134, 404
HpyCH4III ACNGT 2 cut(s) 428, 460
HpyCH4V TGCA 5 cut(s) 4, 76, 169, 287, 550
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 180, 189, 293, 314
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 3 cut(s) 76, 80, 423
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 4 cut(s) 30, 171, 343, 517
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 343, 537
MaeI CTAG 1 cut(s) 293
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 80, 256, 412, 481, 497
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 3 cut(s) 282, 369, 515
MlyI GAGTC 2 cut(s) 16, 511
MmeI TCCRAC 1 cut(s) 126
Mph1103I ATGCAT 1 cut(s) 78
MseI TTAA 1 cut(s) 21
MwoI GCNNNNNNNGC 5 cut(s) 146, 180, 189, 293, 314
NdeII GATC 1 cut(s) 261
NlaIII CATG 3 cut(s) 76, 80, 423
NlaIV GGNNCC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 1 cut(s) 76
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 15, 510
PpsI GAGTC 2 cut(s) 15, 510
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 119, 238
PspPPI RGGWCCY 1 cut(s) 119
PstNI CAGNNNCTG 2 cut(s) 10, 464
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 119, 238
SchI GAGTC 2 cut(s) 16, 511
SduI GDGCHC 1 cut(s) 538
SetI ASST 3 cut(s) 121, 151, 466
SfaNI GCATC 2 cut(s) 343, 537
SinI GGWCC 2 cut(s) 119, 238
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 3 cut(s) 282, 369, 515
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 428, 460
TasI AATT 3 cut(s) 282, 369, 515
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 237, 540
VpaK11BI GGWCC 2 cut(s) 119, 238
XapI RAATTY 2 cut(s) 369, 515
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.