MD04G1003700.v1.1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003873
Physical Location & Seq
Forward (+)
521481 .. 528645
7165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1003700.v1.1.491

Sequence Viewer

Length: 2427 bp
ATGAGTCCATCTTCCTCTCTTCCTTCTTCTCTTCAAAATTTGGGCTTCTCTTTCGGATTTGAATCCACGACAACGAAAACTTCAGAAAATATTATGGAAGACATGGACATCGATCAGGTAGTGGAGGTACCTGACACGCCTGATAGATTAGCTTCCAGACACATTCTTGGCAGAGAATCTGTTGGTAAAGTCAGTAATTCATCATTTGTTCGTGACTTGAGTAATCCAAACCTTGTGGATGAAAAATATGTCAATGGGCCAAAAATCAGGGATAATGGGCATAGTAAAAGACTAGTTATACGTCCTCCGAGAAATCTTAGCAATCTTGACAGTAAGAGTTGCAGTAACTCTAATGTTGACAATTCATCTGCTTCCAATAATACTCCCATTTTCCGGAGAGGTACAGTGAGCAAAAGCTCCAGTCGTGAAGCCAAATATTGTACGGGAACTGATAATGTGGACAAGGGAAAGCCTATGAGAATCAAAATTTCTTCCAAACCATCTGCTTGCCAAGGAAATACTCACTTTTCTGATATAGCCAAACAGAATGGTTACACTCAATTACCTGAAAAGGATTTTCCACTTGGTGAATCAGACGACCTTGTAGCCGAAGACAAAAGAAAAGGGCAAGTAGTATCAGACGGCTGCTCTTCGGTAAATTGCATTCCAAGTCATTCAGAGGGATCCAGAAATAATTTCAAGGGGAAGGAAAAAATTGATGATAGTGCATTTAATGGTCTGGGTTTAGCTTTGGCTCTTGGCAAAGGAGTTGATCCATCCCTTGATCCTCAACATAGGCAACAAAATCATGTGCCTCTTCATTCTGTTAACCTTCCGAGAGTCAGTGGCCAAAAAAGGTTGGTACGGAATGGGTGTATTTCCCCCCATAATATAGCAACAAGGACTAAACAGTTAGCTGAAAAGCCTAACCATAGTTCCAAGGATATTGAACAGAGTCATTCAGGGAATGTGGATTCCAATGGTTCACCATATGTCGTAGACATAAGTGACATAGTTTCTGAAGACAATAATAGTGAAAGAGTGAAAGGGAAAGGGAAAGGTGTAATAATTCATTCTTCTGAACCAAAGGAGAATAATGCAAGAATTATTCGTACATCTGGCAGTCTTGTAAATGATAATAAAGAAGCTAATGGACTCGGTGATCTTGGTAGCGATTTCAATGGTGGCTGGAGAACTACACGTAATCGTTCAAGGCAAATAGATAATTTCTTGCCTTATTCAACCGAGCATTTTCCCAGGAGAACCAATGGAGTTGGAAACTTTATCAACCAACATCAAAATAGGGTAGATAGGAGGGATATCAGGAGTCGAGGAAATCAAAGGACTGAAGGTTTTGTAGAAGATCTAAATGCAACTCAAACAGCTTCAGGGCATGTGTCTGAGCTAGGCTGGATTACTGGGCCATCTCATGCAGCAGAGACAGTTATTAAAAGGCACAAGAAACGGGGATTAAGTTCTGGAAGTCATGCTGAATGCTCTTCACCGGTGTCTGTTGACTCGGATATTGTCTTTCTTGGGTCATCCGAGGCATCGGAAAGTTTAAAATCATCTAGGATCCAGAGACCTCAGTTTCAGGGAGCGTCAACTCGAGTTATTGAAGTTGATGATTTGTCACCTGCTGCAGGGCACTCTGTCGCTCAAGGTATCAATTCCATAAATGACGATTTTGATGCAAGGGCAAGACAACTAGAAGCTGATGAGATGTTGGCTCGTGAACTACAAGAACAATTATACCATGAGGTGCCCATTGCTGGAGGTGGTGAGGTTGATGAACATCTAGCATGGGCACTGCAGCAGCAGGAGGAGAATACTTTAAATACTTATTCTAGAGGAAGTCACAGTGCATCACATCGTAGAGGTTCAGCAATCTTGCATTCAAACAGACAACCCCTGCCAGAATCTTTACAGAACCATTCCAATAGGAGAGGAACCCGGGCTCGAGACTCTTCCAGCATGGCACAGTTGAGGACTCGCTTTCGCAACCAGTCTAGAGTACCAACTAGAGGAAGAAGTCGGCGATTTCCCTCCGACATGGATCTAGAAATGACATTTAATGTATTAGAAGCTTTAGAGGCTGCTGTTGAGGACTTTAGTGATGTGGGACTGAATGCTCGCATGCTTCGAGTTCAGAGGGATTTCAATGACAATGACTATGAGATGTTATTGGCACTTGATGAGAACAATCATCAGCATGCTGGTGCAACAGCACATCAAATTAATAATTTGCCACAATCTACAGTTCAGAGTGACGCCTCTGAGGAAACTTGTGCAATTTGTCTGGAAACCCCAACCATTGGAGAAACAGTTCGCCATCTACCTTGCTTGCACAGATTTCACAAAGATTGCATTGATCCATGGCTTGGTAGAAGGACTTCGTGCCCAGTTTGTAAGTGTTCCGTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

809

Amino Acids

89.02

Weight (kDa)

6.89

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 760 - 804 4e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 762 - 804 6.6e-12 Ring finger domain
zf-RING_11 PF17123 763 - 790 3.9e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 763 - 803 7e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 763 - 803 3.6e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1645
Acc36I ACCTGC 1 cut(s) 1645
Acc65I GGTACC 1 cut(s) 127
AccB1I GGYRCC 2 cut(s) 127, 1762
AccB7I CCANNNNNTGG 2 cut(s) 2315, 2381
AccI GTMKAC 1 cut(s) 999
AccIII TCCGGA 1 cut(s) 393
AclWI GGATC 8 cut(s) 678, 691, 767, 779, 1570, 1583, 2064, 2366
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 2 cut(s) 37, 486
AcuI CTGAAG 4 cut(s) 66, 1041, 1368, 1371
AcyI GRCGYC 1 cut(s) 2271
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 6 cut(s) 129, 403, 442, 864, 1114, 2016
AfiI CCNNNNNNNGG 6 cut(s) 393, 1643, 1772, 2024, 2315, 2381
AflIII ACRYGT 1 cut(s) 1199
AgeI ACCGGT 1 cut(s) 1504
AhlI ACTAGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 1256
AloI GAACNNNNNNTCC 2 cut(s) 2310, 2342
AluBI AGCT 9 cut(s) 152, 417, 749, 917, 1148, 1385, 1405, 1715, 2087
AluI AGCT 9 cut(s) 152, 417, 749, 917, 1148, 1385, 1405, 1715, 2087
Alw26I GTCTC 3 cut(s) 1433, 1576, 1956
AlwI GGATC 8 cut(s) 678, 691, 767, 779, 1570, 1583, 2064, 2366
Ama87I CYCGRG 3 cut(s) 1608, 1953, 1959
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 3 cut(s) 257, 847, 1421
ApeKI GCWGC 6 cut(s) 645, 1433, 1640, 1813, 1816, 2096
ApoI RAATTY 2 cut(s) 37, 486
AseI ATTAAT 1 cut(s) 2238
AsiGI ACCGGT 1 cut(s) 1504
Asp700I GAANNNNTTC 2 cut(s) 2325, 2392
Asp718I GGTACC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 257, 1421
AsuC2I CCSGG 2 cut(s) 1954, 1955
AsuHPI GGTGA 7 cut(s) 599, 978, 1172, 1494, 1626, 1793, 2413
AvaI CYCGRG 3 cut(s) 1608, 1953, 1959
BaeGI GKGCMC 4 cut(s) 1650, 1767, 1810, 2402
BalI TGGCCA 1 cut(s) 849
BamHI GGATCC 2 cut(s) 683, 1575
BanI GGYRCC 2 cut(s) 127, 1762
BanII GRGCYC 1 cut(s) 1960
BarI GAAGNNNNNNTAC 2 cut(s) 2377, 2409
BauI CACGAG 1 cut(s) 1731
BbsI GAAGAC 3 cut(s) 105, 618, 1029
BbvI GCAGC 6 cut(s) 632, 1445, 1627, 1825, 1828, 2083
BccI CCATC 5 cut(s) 16, 508, 784, 1432, 2340
BceAI ACGGC 1 cut(s) 658
BcgI CGANNNNNNTGC 2 cut(s) 1673, 1707
BciT130I CCWGG 1 cut(s) 1258
BcnI CCSGG 2 cut(s) 1954, 1955
BcoDI GTCTC 3 cut(s) 1433, 1576, 1956
BcuI ACTAGT 1 cut(s) 292
BfmI CTRYAG 3 cut(s) 1641, 1811, 2256
BfuAI ACCTGC 1 cut(s) 1645
BglII AGATCT 1 cut(s) 1363
BisI GCNGC 6 cut(s) 646, 1434, 1641, 1814, 1817, 2097
BlsI GCNGC 6 cut(s) 647, 1435, 1642, 1815, 1818, 2098
Bme1390I CCNGG 3 cut(s) 1258, 1954, 1955
BmeT110I CYCGRG 3 cut(s) 1608, 1953, 1959
BmgT120I GGNCC 2 cut(s) 257, 1421
BmiI GGNNCC 5 cut(s) 129, 685, 1577, 1764, 1951
BmrFI CCNGG 3 cut(s) 1258, 1954, 1955
BmrI ACTGGG 2 cut(s) 1428, 2396
BmsI GCATC 3 cut(s) 1559, 1681, 1874
BmuI ACTGGG 2 cut(s) 1428, 2396
BpiI GAAGAC 3 cut(s) 105, 618, 1029
BpmI CTGGAG 3 cut(s) 403, 1210, 1794
BpuEI CTTGAG 2 cut(s) 238, 1644
BpuMI CCSGG 2 cut(s) 1954, 1955
Bsa29I ATCGAT 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 1202
BsaBI GATNNNNATC 2 cut(s) 61, 1794
BsaHI GRCGYC 1 cut(s) 2271
BsaI GGTCTC 1 cut(s) 1576
BsaJI CCNNGG 6 cut(s) 511, 939, 1256, 1545, 1953, 2375
BsaWI WCCGGW 2 cut(s) 393, 1504
BsaXI ACNNNNNCTCC 2 cut(s) 2310, 2340
Bsc4I CCNNNNNNNGG 6 cut(s) 393, 1643, 1772, 2024, 2315, 2381
Bse118I RCCGGY 1 cut(s) 1504
Bse1I ACTGG 4 cut(s) 420, 1423, 2005, 2402
Bse3DI GCAATG 1 cut(s) 1767
Bse8I GATNNNNATC 2 cut(s) 61, 1794
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 1 cut(s) 1258
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 6 cut(s) 511, 939, 1256, 1545, 1953, 2375
BseGI GGATG 3 cut(s) 244, 776, 1541
BseJI GATNNNNATC 2 cut(s) 61, 1794
BseLI CCNNNNNNNGG 6 cut(s) 393, 1643, 1772, 2024, 2315, 2381
BseMI GCAATG 1 cut(s) 1767
BseMII CTCAG 3 cut(s) 1392, 1601, 2268
BseNI ACTGG 4 cut(s) 420, 1423, 2005, 2402
BseRI GAGGAG 1 cut(s) 1838
BseSI GKGCMC 4 cut(s) 1650, 1767, 1810, 2402
BseXI GCAGC 6 cut(s) 632, 1445, 1627, 1825, 1828, 2083
BshFI GGCC 3 cut(s) 259, 849, 1423
BshNI GGYRCC 2 cut(s) 127, 1762
BshTI ACCGGT 1 cut(s) 1504
BshVI ATCGAT 1 cut(s) 111
BsiHKCI CYCGRG 3 cut(s) 1608, 1953, 1959
BsiSI CCGG 3 cut(s) 394, 1505, 1954
BslFI GGGAC 1 cut(s) 2136
BslI CCNNNNNNNGG 6 cut(s) 393, 1643, 1772, 2024, 2315, 2381
BsmAI GTCTC 3 cut(s) 1433, 1576, 1956
BsmFI GGGAC 1 cut(s) 2136
BsmI GAATGC 4 cut(s) 663, 1499, 1894, 2134
BsnI GGCC 3 cut(s) 259, 849, 1423
Bso31I GGTCTC 1 cut(s) 1576
BsoBI CYCGRG 3 cut(s) 1608, 1953, 1959
Bsp1286I GDGCHC 5 cut(s) 1650, 1767, 1810, 1960, 2402
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
Bsp19I CCATGG 1 cut(s) 2375
BspANI GGCC 3 cut(s) 259, 849, 1423
BspCNI CTCAG 3 cut(s) 1393, 1600, 2269
BspDI ATCGAT 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 129, 685, 1577, 1764, 1951
BspMAI CTGCAG 2 cut(s) 1645, 1815
BspMI ACCTGC 1 cut(s) 1645
BspPI GGATC 8 cut(s) 678, 691, 767, 779, 1570, 1583, 2064, 2366
BspQI GCTCTTC 2 cut(s) 655, 1504
BspT107I GGYRCC 2 cut(s) 127, 1762
BspTNI GGTCTC 1 cut(s) 1576
BsrDI GCAATG 1 cut(s) 1767
BsrFI RCCGGY 1 cut(s) 1504
BsrI ACTGG 4 cut(s) 420, 1423, 2005, 2402
BssAI RCCGGY 1 cut(s) 1504
BssECI CCNNGG 6 cut(s) 511, 939, 1256, 1545, 1953, 2375
BssMI GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
BssNI GRCGYC 1 cut(s) 2271
BssSI CACGAG 1 cut(s) 1731
BssT1I CCWWGG 3 cut(s) 511, 939, 2375
Bst2BI CACGAG 1 cut(s) 1731
Bst2UI CCWGG 1 cut(s) 1258
Bst4CI ACNGT 8 cut(s) 332, 406, 912, 1444, 1862, 1983, 2260, 2326
Bst6I CTCTTC 6 cut(s) 24, 36, 655, 822, 1504, 1972
BstACI GRCGYC 1 cut(s) 2271
BstBAI YACGTR 1 cut(s) 1202
BstC8I GCNNGC 5 cut(s) 508, 2134, 2138, 2214, 2345
BstDEI CTNAG 4 cut(s) 317, 1401, 1587, 2277
BstDSI CCRYGG 1 cut(s) 2375
BstENI CCTNNNNNAGG 1 cut(s) 1641
BstF5I GGATG 3 cut(s) 244, 776, 1541
BstKTI GATC 9 cut(s) 115, 686, 775, 787, 1165, 1366, 1578, 2059, 2374
BstMAI GTCTC 3 cut(s) 1433, 1576, 1956
BstMBI GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
BstMWI GCNNNNNNNGC 1 cut(s) 2093
BstNI CCWGG 1 cut(s) 1258
BstNSI RCATGY 3 cut(s) 1397, 2140, 2216
BstSCI CCNGG 3 cut(s) 1256, 1952, 1953
BstSFI CTRYAG 3 cut(s) 1641, 1811, 2256
BstSLI GKGCMC 4 cut(s) 1650, 1767, 1810, 2402
BstV1I GCAGC 6 cut(s) 632, 1445, 1627, 1825, 1828, 2083
BstV2I GAAGAC 3 cut(s) 105, 618, 1029
BstX2I RGATCY 4 cut(s) 683, 1363, 1575, 2056
BstYI RGATCY 4 cut(s) 683, 1363, 1575, 2056
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 3 cut(s) 259, 849, 1423
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 2375
BtsCI GGATG 3 cut(s) 244, 776, 1541
BtsI GCAGTG 1 cut(s) 1808
BtsIMutI CAGTG 4 cut(s) 411, 850, 1808, 1867
BveI ACCTGC 1 cut(s) 1645
Cac8I GCNNGC 5 cut(s) 508, 2134, 2138, 2214, 2345
Cfr10I RCCGGY 1 cut(s) 1504
Cfr13I GGNCC 2 cut(s) 257, 1421
Cfr9I CCCGGG 1 cut(s) 1953
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 2 cut(s) 1590, 2279
Csp6I GTAC 6 cut(s) 128, 402, 441, 863, 1113, 2015
CspAI ACCGGT 1 cut(s) 1504
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviQI GTAC 6 cut(s) 128, 402, 441, 863, 1113, 2015
DdeI CTNAG 4 cut(s) 317, 1401, 1587, 2277
DpnI GATC 9 cut(s) 114, 685, 774, 786, 1164, 1365, 1577, 2058, 2373
DpnII GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
DraI TTTAAA 2 cut(s) 1563, 1836
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 6 cut(s) 24, 36, 655, 822, 1504, 1972
EarI CTCTTC 6 cut(s) 24, 36, 655, 822, 1504, 1972
Eco130I CCWWGG 3 cut(s) 511, 939, 2375
Eco24I GRGCYC 1 cut(s) 1960
Eco31I GGTCTC 1 cut(s) 1576
Eco32I GATATC 1 cut(s) 1321
Eco57I CTGAAG 4 cut(s) 66, 1041, 1368, 1371
Eco88I CYCGRG 3 cut(s) 1608, 1953, 1959
EcoNI CCTNNNNNAGG 1 cut(s) 1641
EcoRII CCWGG 1 cut(s) 1256
EcoRV GATATC 1 cut(s) 1321
EcoT14I CCWWGG 3 cut(s) 511, 939, 2375
EcoT38I GRGCYC 1 cut(s) 1960
ErhI CCWWGG 3 cut(s) 511, 939, 2375
FaqI GGGAC 1 cut(s) 2136
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 1 cut(s) 999
Fnu4HI GCNGC 6 cut(s) 646, 1434, 1641, 1814, 1817, 2097
FokI GGATG 3 cut(s) 251, 763, 1528
FriOI GRGCYC 1 cut(s) 1960
Fsp4HI GCNGC 6 cut(s) 646, 1434, 1641, 1814, 1817, 2097
GluI GCNGC 6 cut(s) 646, 1434, 1641, 1814, 1817, 2097
GsuI CTGGAG 3 cut(s) 403, 1210, 1794
HaeIII GGCC 3 cut(s) 259, 849, 1423
HapII CCGG 3 cut(s) 394, 1505, 1954
HgaI GACGC 2 cut(s) 1590, 2279
Hin1I GRCGYC 1 cut(s) 2271
HincII GTYRAC 4 cut(s) 358, 829, 1516, 1605
HindII GTYRAC 4 cut(s) 358, 829, 1516, 1605
HindIII AAGCTT 1 cut(s) 2085
HpaI GTTAAC 1 cut(s) 829
HpaII CCGG 3 cut(s) 394, 1505, 1954
HphI GGTGA 7 cut(s) 599, 978, 1172, 1494, 1626, 1793, 2413
Hpy166II GTNNAC 8 cut(s) 358, 460, 829, 986, 1000, 1516, 1605, 1736
Hpy8I GTNNAC 8 cut(s) 358, 460, 829, 986, 1000, 1516, 1605, 1736
HpyAV CCTTC 5 cut(s) 33, 700, 842, 1343, 2382
HpyCH4III ACNGT 8 cut(s) 332, 406, 912, 1444, 1862, 1983, 2260, 2326
HpyCH4IV ACGT 2 cut(s) 301, 1201
HpyF10VI GCNNNNNNNGC 1 cut(s) 2093
HpyF3I CTNAG 4 cut(s) 317, 1401, 1587, 2277
HpySE526I ACGT 2 cut(s) 301, 1201
Hsp92I GRCGYC 1 cut(s) 2271
Kpn2I TCCGGA 1 cut(s) 393
KpnI GGTACC 1 cut(s) 131
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
LguI GCTCTTC 2 cut(s) 655, 1504
LmnI GCTCC 2 cut(s) 422, 1598
Lsp1109I GCAGC 6 cut(s) 632, 1445, 1627, 1825, 1828, 2083
LweI GCATC 3 cut(s) 1559, 1681, 1874
MaeII ACGT 2 cut(s) 301, 1201
MaeIII GTNAC 8 cut(s) 212, 344, 551, 1007, 1632, 1856, 2267, 2419
MalI GATC 9 cut(s) 114, 685, 774, 786, 1164, 1365, 1577, 2058, 2373
MboI GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
MflI RGATCY 4 cut(s) 683, 1363, 1575, 2056
MhlI GDGCHC 5 cut(s) 1650, 1767, 1810, 1960, 2402
MlsI TGGCCA 1 cut(s) 849
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 8 cut(s) 13, 849, 964, 1149, 1336, 1511, 1958, 1984
MmeI TCCRAC 2 cut(s) 1255, 2073
Mox20I TGGCCA 1 cut(s) 849
MroI TCCGGA 1 cut(s) 393
MroXI GAANNNNTTC 2 cut(s) 2325, 2392
MscI TGGCCA 1 cut(s) 849
MseI TTAA 8 cut(s) 732, 828, 1449, 1472, 1562, 1835, 2073, 2238
MslI CAYNNNNRTG 2 cut(s) 2211, 2217
Msp20I TGGCCA 1 cut(s) 849
MspI CCGG 3 cut(s) 394, 1505, 1954
MspR9I CCNGG 3 cut(s) 1258, 1954, 1955
Mva1269I GAATGC 4 cut(s) 663, 1499, 1894, 2134
MvaI CCWGG 1 cut(s) 1258
MwoI GCNNNNNNNGC 1 cut(s) 2093
NciI CCSGG 2 cut(s) 1954, 1955
NcoI CCATGG 1 cut(s) 2375
NdeI CATATG 1 cut(s) 991
NdeII GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
NlaIV GGNNCC 5 cut(s) 129, 685, 1577, 1764, 1951
NmuCI GTSAC 6 cut(s) 212, 1007, 1632, 1856, 2267, 2419
NspI RCATGY 3 cut(s) 1397, 2140, 2216
PaeI GCATGC 2 cut(s) 2140, 2216
PaeR7I CTCGAG 2 cut(s) 1608, 1959
PaqCI CACCTGC 1 cut(s) 1645
PciSI GCTCTTC 2 cut(s) 655, 1504
PcsI WCGNNNNNNNCGW 1 cut(s) 2140
PctI GAATGC 4 cut(s) 663, 1499, 1894, 2134
PdmI GAANNNNTTC 2 cut(s) 2325, 2392
PfeI GAWTC 6 cut(s) 62, 176, 480, 590, 974, 1919
PflMI CCANNNNNTGG 2 cut(s) 2315, 2381
PinAI ACCGGT 1 cut(s) 1504
PkrI GCNGC 6 cut(s) 647, 1435, 1642, 1815, 1818, 2098
PleI GAGTC 8 cut(s) 12, 848, 963, 1149, 1335, 1511, 1958, 1984
PpsI GAGTC 8 cut(s) 12, 848, 963, 1149, 1335, 1511, 1958, 1984
Ppu21I YACGTR 1 cut(s) 1202
PshBI ATTAAT 1 cut(s) 2238
Psp6I CCWGG 1 cut(s) 1256
PspGI CCWGG 1 cut(s) 1256
PspN4I GGNNCC 5 cut(s) 129, 685, 1577, 1764, 1951
PspPI GGNCC 2 cut(s) 257, 1421
PspXI VCTCGAGB 1 cut(s) 1608
PstI CTGCAG 2 cut(s) 1645, 1815
PsuI RGATCY 4 cut(s) 683, 1363, 1575, 2056
RsaI GTAC 6 cut(s) 129, 403, 442, 864, 1114, 2016
RsaNI GTAC 6 cut(s) 128, 402, 441, 863, 1113, 2015
RseI CAYNNNNRTG 2 cut(s) 2211, 2217
SapI GCTCTTC 2 cut(s) 655, 1504
SaqAI TTAA 8 cut(s) 732, 828, 1449, 1472, 1562, 1835, 2073, 2238
SatI GCNGC 6 cut(s) 646, 1434, 1641, 1814, 1817, 2097
Sau3AI GATC 9 cut(s) 112, 683, 772, 784, 1162, 1363, 1575, 2056, 2371
Sau96I GGNCC 2 cut(s) 257, 1421
SchI GAGTC 8 cut(s) 13, 849, 964, 1149, 1336, 1511, 1958, 1984
ScrFI CCNGG 3 cut(s) 1258, 1954, 1955
SduI GDGCHC 5 cut(s) 1650, 1767, 1810, 1960, 2402
SfaNI GCATC 3 cut(s) 1559, 1681, 1874
SfcI CTRYAG 3 cut(s) 1641, 1811, 2256
Sfr274I CTCGAG 2 cut(s) 1608, 1959
SgrAI CRCCGGYG 1 cut(s) 1504
SlaI CTCGAG 2 cut(s) 1608, 1959
SmaI CCCGGG 1 cut(s) 1955
SmiMI CAYNNNNRTG 2 cut(s) 2211, 2217
SmlI CTYRAG 4 cut(s) 217, 1608, 1659, 1959
SmoI CTYRAG 4 cut(s) 217, 1608, 1659, 1959
SpeI ACTAGT 1 cut(s) 292
SphI GCATGC 2 cut(s) 2140, 2216
SspI AATATT 2 cut(s) 91, 437
StyD4I CCNGG 3 cut(s) 1256, 1952, 1953
StyI CCWWGG 3 cut(s) 511, 939, 2375
TaaI ACNGT 8 cut(s) 332, 406, 912, 1444, 1862, 1983, 2260, 2326
TaiI ACGT 2 cut(s) 304, 1204
TaqI TCGA 5 cut(s) 111, 1330, 1609, 1960, 2143
TfiI GAWTC 6 cut(s) 62, 176, 480, 590, 974, 1919
Tru1I TTAA 8 cut(s) 732, 828, 1449, 1472, 1562, 1835, 2073, 2238
Tru9I TTAA 8 cut(s) 732, 828, 1449, 1472, 1562, 1835, 2073, 2238
TscAI CASTG 4 cut(s) 411, 850, 1815, 1867
TseFI GTSAC 6 cut(s) 212, 1007, 1632, 1856, 2267, 2419
TseI GCWGC 6 cut(s) 645, 1433, 1640, 1813, 1816, 2096
Tsp45I GTSAC 6 cut(s) 212, 1007, 1632, 1856, 2267, 2419
TspDTI ATGAA 6 cut(s) 189, 255, 354, 809, 1061, 1806
TspGWI ACGGA 2 cut(s) 880, 2407
TspMI CCCGGG 1 cut(s) 1953
TspRI CASTG 4 cut(s) 411, 850, 1815, 1867
Van91I CCANNNNNTGG 2 cut(s) 2315, 2381
VspI ATTAAT 1 cut(s) 2238
XagI CCTNNNNNAGG 1 cut(s) 1641
XapI RAATTY 2 cut(s) 37, 486
XbaI TCTAGA 3 cut(s) 1847, 2009, 2059
XceI RCATGY 3 cut(s) 1397, 2140, 2216
XhoI CTCGAG 2 cut(s) 1608, 1959
XmaI CCCGGG 1 cut(s) 1953
XmiI GTMKAC 1 cut(s) 999
XmnI GAANNNNTTC 2 cut(s) 2325, 2392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.