RING-like zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04790 |
| fragaria_vesca | FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 |
| malus_domestica | MD04G1003700.v1.1 |
| prunus_persica | Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 |
| pyrus_communis | pycom04g00380 |
| rosa_chinensis | RchiOBHm_Chr4g0385131 |
| rosa_laevigata | RLG00000010255 |
| rosa_multiflora | Rmu_co8075098.1_g000001 Rmu_sc0003086.1_g000006 Rmu_sc0008734.1_g000019 |
| rosa_roxburghii | Rroxscaffold_5G00333050 |
| rosa_rugosa | Rorug03G0299700 Rorug03G0299800 |
| rosa_samantha | Rh4AG003000 Rh4BG002400 Rh4CG003200 Rh4DG002700 |
| rosa_wichuraiana | Rw4G000630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1216 |
| Acc36I | ACCTGC | 2 cut(s) | 1205, 1216 |
| AccB1I | GGYRCC | 1 cut(s) | 848 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1901 |
| AccII | CGCG | 1 cut(s) | 778 |
| AciI | CCGC | 4 cut(s) | 536, 1390, 1738, 1803 |
| AclI | AACGTT | 1 cut(s) | 1172 |
| AclWI | GGATC | 3 cut(s) | 237, 794, 1650 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AcsI | RAATTY | 1 cut(s) | 940 |
| AcuI | CTGAAG | 3 cut(s) | 606, 1718, 1884 |
| AcvI | CACGTG | 1 cut(s) | 1304 |
| AfaI | GTAC | 4 cut(s) | 286, 568, 775, 1848 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1214, 1343, 1901 |
| AflIII | ACRYGT | 3 cut(s) | 721, 776, 1722 |
| AjnI | CCWGG | 3 cut(s) | 976, 1142, 1524 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1896, 1928 |
| AluBI | AGCT | 7 cut(s) | 308, 707, 956, 1376, 1673, 1814, 1871 |
| AluI | AGCT | 7 cut(s) | 308, 707, 956, 1376, 1673, 1814, 1871 |
| Alw26I | GTCTC | 4 cut(s) | 1112, 1500, 1648, 1673 |
| AlwI | GGATC | 3 cut(s) | 237, 794, 1650 |
| Ama87I | CYCGRG | 1 cut(s) | 1530 |
| AoxI | GGCC | 2 cut(s) | 412, 1178 |
| ApeKI | GCWGC | 2 cut(s) | 1211, 1387 |
| ApoI | RAATTY | 1 cut(s) | 940 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 45, 77 |
| AseI | ATTAAT | 1 cut(s) | 1824 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1911 |
| AspS9I | GGNCC | 1 cut(s) | 1217 |
| AsuHPI | GGTGA | 4 cut(s) | 543, 1073, 1097, 1197 |
| AvaI | CYCGRG | 1 cut(s) | 1530 |
| AvaII | GGWCC | 1 cut(s) | 1217 |
| BaeGI | GKGCMC | 2 cut(s) | 315, 1384 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 951, 984, 1307, 1340 |
| BalI | TGGCCA | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 848 |
| BanII | GRGCYC | 1 cut(s) | 1525 |
| BbrPI | CACGTG | 1 cut(s) | 1304 |
| BbsI | GAAGAC | 1 cut(s) | 677 |
| BbvI | GCAGC | 2 cut(s) | 1198, 1399 |
| BccI | CCATC | 1 cut(s) | 979 |
| BciT130I | CCWGG | 3 cut(s) | 978, 1144, 1526 |
| BciVI | GTATCC | 1 cut(s) | 889 |
| BcoDI | GTCTC | 4 cut(s) | 1112, 1500, 1648, 1673 |
| BfaI | CTAG | 5 cut(s) | 1280, 1373, 1419, 1590, 1646 |
| BfmI | CTRYAG | 5 cut(s) | 213, 1212, 1310, 1385, 1842 |
| BfuAI | ACCTGC | 2 cut(s) | 1205, 1216 |
| BfuI | GTATCC | 1 cut(s) | 889 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 260 |
| BglII | AGATCT | 1 cut(s) | 467 |
| BisI | GCNGC | 2 cut(s) | 1212, 1388 |
| BlsI | GCNGC | 2 cut(s) | 1213, 1389 |
| Bme1390I | CCNGG | 3 cut(s) | 978, 1144, 1526 |
| Bme18I | GGWCC | 1 cut(s) | 1217 |
| BmeT110I | CYCGRG | 1 cut(s) | 1530 |
| BmgT120I | GGNCC | 1 cut(s) | 1217 |
| BmiI | GGNNCC | 6 cut(s) | 850, 1219, 1335, 1453, 1522, 1587 |
| BmrFI | CCNGG | 3 cut(s) | 978, 1144, 1526 |
| BmrI | ACTGGG | 2 cut(s) | 118, 909 |
| BmsI | GCATC | 5 cut(s) | 373, 523, 734, 835, 1846 |
| BmuI | ACTGGG | 2 cut(s) | 118, 909 |
| BpiI | GAAGAC | 1 cut(s) | 677 |
| BpmI | CTGGAG | 1 cut(s) | 787 |
| Bpu10I | CCTNAGC | 2 cut(s) | 264, 1266 |
| BpuEI | CTTGAG | 1 cut(s) | 156 |
| Bsa29I | ATCGAT | 1 cut(s) | 18 |
| BsaAI | YACGTR | 1 cut(s) | 1304 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1368 |
| BsaJI | CCNNGG | 4 cut(s) | 316, 375, 1231, 1524 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1003, 1033, 1896, 1926 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1214, 1343, 1901 |
| Bse1I | ACTGG | 4 cut(s) | 124, 191, 543, 904 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1368 |
| BseBI | CCWGG | 3 cut(s) | 978, 1144, 1526 |
| BseCI | ATCGAT | 1 cut(s) | 18 |
| BseDI | CCNNGG | 4 cut(s) | 316, 375, 1231, 1524 |
| BseGI | GGATG | 4 cut(s) | 749, 990, 1139, 1699 |
| BseJI | GATNNNNATC | 1 cut(s) | 1368 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1214, 1343, 1901 |
| BseMII | CTCAG | 6 cut(s) | 333, 813, 963, 1104, 1107, 1172 |
| BseNI | ACTGG | 4 cut(s) | 124, 191, 543, 904 |
| BseRI | GAGGAG | 2 cut(s) | 1409, 1533 |
| BseSI | GKGCMC | 2 cut(s) | 315, 1384 |
| BseXI | GCAGC | 2 cut(s) | 1198, 1399 |
| BseYI | CCCAGC | 1 cut(s) | 1538 |
| Bsh1236I | CGCG | 1 cut(s) | 778 |
| BshFI | GGCC | 2 cut(s) | 414, 1180 |
| BshNI | GGYRCC | 1 cut(s) | 848 |
| BshVI | ATCGAT | 1 cut(s) | 18 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1530 |
| BsiSI | CCGG | 1 cut(s) | 852 |
| BslFI | GGGAC | 2 cut(s) | 1203, 1969 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1214, 1343, 1901 |
| BsmAI | GTCTC | 4 cut(s) | 1112, 1500, 1648, 1673 |
| BsmBI | CGTCTC | 1 cut(s) | 1500 |
| BsmFI | GGGAC | 2 cut(s) | 1203, 1969 |
| BsmI | GAATGC | 3 cut(s) | 1070, 1405, 1465 |
| BsnI | GGCC | 2 cut(s) | 414, 1180 |
| BsoBI | CYCGRG | 1 cut(s) | 1530 |
| Bsp1286I | GDGCHC | 3 cut(s) | 315, 1384, 1525 |
| Bsp143I | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 4 cut(s) | 536, 1390, 1738, 1803 |
| BspANI | GGCC | 2 cut(s) | 414, 1180 |
| BspCNI | CTCAG | 6 cut(s) | 334, 814, 964, 1103, 1108, 1171 |
| BspDI | ATCGAT | 1 cut(s) | 18 |
| BspFNI | CGCG | 1 cut(s) | 778 |
| BspHI | TCATGA | 1 cut(s) | 1327 |
| BspLI | GGNNCC | 6 cut(s) | 850, 1219, 1335, 1453, 1522, 1587 |
| BspMAI | CTGCAG | 3 cut(s) | 1216, 1314, 1389 |
| BspMI | ACCTGC | 2 cut(s) | 1205, 1216 |
| BspPI | GGATC | 3 cut(s) | 237, 794, 1650 |
| BspQI | GCTCTTC | 1 cut(s) | 387 |
| BspT107I | GGYRCC | 1 cut(s) | 848 |
| BsrI | ACTGG | 4 cut(s) | 124, 191, 543, 904 |
| BssECI | CCNNGG | 4 cut(s) | 316, 375, 1231, 1524 |
| BssMI | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| BssT1I | CCWWGG | 3 cut(s) | 316, 375, 1231 |
| Bst2UI | CCWGG | 3 cut(s) | 978, 1144, 1526 |
| Bst4CI | ACNGT | 7 cut(s) | 284, 521, 848, 964, 1560, 1846, 1912 |
| Bst6I | CTCTTC | 3 cut(s) | 387, 582, 1971 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1435 |
| BstBAI | YACGTR | 1 cut(s) | 1304 |
| BstC8I | GCNNGC | 2 cut(s) | 1355, 1931 |
| BstDEI | CTNAG | 8 cut(s) | 264, 342, 822, 972, 1090, 1116, 1158, 1266 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1212 |
| BstF5I | GGATG | 4 cut(s) | 749, 990, 1139, 1699 |
| BstFNI | CGCG | 1 cut(s) | 778 |
| BstKTI | GATC | 6 cut(s) | 245, 334, 470, 802, 937, 1645 |
| BstMAI | GTCTC | 4 cut(s) | 1112, 1500, 1648, 1673 |
| BstMBI | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 260, 343, 370, 533, 1435 |
| BstNI | CCWGG | 3 cut(s) | 978, 1144, 1526 |
| BstNSI | RCATGY | 2 cut(s) | 725, 1726 |
| BstSCI | CCNGG | 3 cut(s) | 976, 1142, 1524 |
| BstSFI | CTRYAG | 5 cut(s) | 213, 1212, 1310, 1385, 1842 |
| BstSLI | GKGCMC | 2 cut(s) | 315, 1384 |
| BstUI | CGCG | 1 cut(s) | 778 |
| BstV1I | GCAGC | 2 cut(s) | 1198, 1399 |
| BstV2I | GAAGAC | 1 cut(s) | 677 |
| BstX2I | RGATCY | 4 cut(s) | 242, 467, 799, 1642 |
| BstYI | RGATCY | 4 cut(s) | 242, 467, 799, 1642 |
| Bsu15I | ATCGAT | 1 cut(s) | 18 |
| BsuI | GTATCC | 1 cut(s) | 889 |
| BsuRI | GGCC | 2 cut(s) | 414, 1180 |
| BsuTUI | ATCGAT | 1 cut(s) | 18 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtsCI | GGATG | 4 cut(s) | 749, 990, 1139, 1699 |
| BtsI | GCAGTG | 1 cut(s) | 1382 |
| BtsIMutI | CAGTG | 4 cut(s) | 415, 550, 582, 1382 |
| BveI | ACCTGC | 2 cut(s) | 1205, 1216 |
| Cac8I | GCNNGC | 2 cut(s) | 1355, 1931 |
| CciI | TCATGA | 1 cut(s) | 1327 |
| Cfr13I | GGNCC | 1 cut(s) | 1217 |
| ClaI | ATCGAT | 1 cut(s) | 18 |
| Csp6I | GTAC | 4 cut(s) | 285, 567, 774, 1847 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 558, 593 |
| CviQI | GTAC | 4 cut(s) | 285, 567, 774, 1847 |
| DdeI | CTNAG | 8 cut(s) | 264, 342, 822, 972, 1090, 1116, 1158, 1266 |
| DpnI | GATC | 6 cut(s) | 244, 333, 469, 801, 936, 1644 |
| DpnII | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 3 cut(s) | 387, 582, 1971 |
| EarI | CTCTTC | 3 cut(s) | 387, 582, 1971 |
| Eco130I | CCWWGG | 3 cut(s) | 316, 375, 1231 |
| Eco24I | GRGCYC | 1 cut(s) | 1525 |
| Eco47I | GGWCC | 1 cut(s) | 1217 |
| Eco57I | CTGAAG | 3 cut(s) | 606, 1718, 1884 |
| Eco72I | CACGTG | 1 cut(s) | 1304 |
| Eco88I | CYCGRG | 1 cut(s) | 1530 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1212 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1217 |
| EcoRI | GAATTC | 1 cut(s) | 940 |
| EcoRII | CCWGG | 3 cut(s) | 976, 1142, 1524 |
| EcoT14I | CCWWGG | 3 cut(s) | 316, 375, 1231 |
| EcoT38I | GRGCYC | 1 cut(s) | 1525 |
| ErhI | CCWWGG | 3 cut(s) | 316, 375, 1231 |
| Esp3I | CGTCTC | 1 cut(s) | 1500 |
| FaqI | GGGAC | 2 cut(s) | 1203, 1969 |
| FauI | CCCGC | 2 cut(s) | 1383, 1731 |
| FauNDI | CATATG | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 2 cut(s) | 1212, 1388 |
| FokI | GGATG | 4 cut(s) | 756, 997, 1126, 1706 |
| FriOI | GRGCYC | 1 cut(s) | 1525 |
| Fsp4HI | GCNGC | 2 cut(s) | 1212, 1388 |
| FspBI | CTAG | 5 cut(s) | 1280, 1373, 1419, 1590, 1646 |
| GluI | GCNGC | 2 cut(s) | 1212, 1388 |
| GsaI | CCCAGC | 1 cut(s) | 1542 |
| GsuI | CTGGAG | 1 cut(s) | 787 |
| HaeIII | GGCC | 2 cut(s) | 414, 1180 |
| HapII | CCGG | 1 cut(s) | 852 |
| HindIII | AAGCTT | 2 cut(s) | 1671, 1869 |
| HinfI | GANTC | 8 cut(s) | 71, 405, 815, 1088, 1147, 1256, 1567, 1612 |
| HpaII | CCGG | 1 cut(s) | 852 |
| HphI | GGTGA | 4 cut(s) | 543, 1073, 1097, 1197 |
| Hpy166II | GTNNAC | 3 cut(s) | 551, 922, 1307 |
| Hpy188III | TCNNGA | 7 cut(s) | 95, 246, 741, 1001, 1328, 1646, 1886 |
| Hpy8I | GTNNAC | 3 cut(s) | 551, 922, 1307 |
| Hpy99I | CGWCG | 1 cut(s) | 1002 |
| HpyAV | CCTTC | 9 cut(s) | 645, 902, 998, 1002, 1419, 1515, 1583, 1602, 1641 |
| HpyCH4III | ACNGT | 7 cut(s) | 284, 521, 848, 964, 1560, 1846, 1912 |
| HpyCH4IV | ACGT | 5 cut(s) | 997, 1073, 1172, 1303, 1412 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 260, 343, 370, 533, 1435 |
| HpyF3I | CTNAG | 8 cut(s) | 264, 342, 822, 972, 1090, 1116, 1158, 1266 |
| HpySE526I | ACGT | 5 cut(s) | 997, 1073, 1172, 1303, 1412 |
| Kzo9I | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| LguI | GCTCTTC | 1 cut(s) | 387 |
| LmnI | GCTCC | 3 cut(s) | 1457, 1520, 1591 |
| Lsp1109I | GCAGC | 2 cut(s) | 1198, 1399 |
| LweI | GCATC | 5 cut(s) | 373, 523, 734, 835, 1846 |
| MaeI | CTAG | 5 cut(s) | 1280, 1373, 1419, 1590, 1646 |
| MaeII | ACGT | 5 cut(s) | 997, 1073, 1172, 1303, 1412 |
| MaeIII | GTNAC | 6 cut(s) | 116, 126, 580, 1085, 1203, 1485 |
| MalI | GATC | 6 cut(s) | 244, 333, 469, 801, 936, 1644 |
| MboI | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| MfeI | CAATTG | 1 cut(s) | 1319 |
| MflI | RGATCY | 4 cut(s) | 242, 467, 799, 1642 |
| MhlI | GDGCHC | 3 cut(s) | 315, 1384, 1525 |
| MlsI | TGGCCA | 1 cut(s) | 414 |
| MluI | ACGCGT | 1 cut(s) | 776 |
| MluNI | TGGCCA | 1 cut(s) | 414 |
| MlyI | GAGTC | 3 cut(s) | 414, 1082, 1576 |
| MmeI | TCCRAC | 3 cut(s) | 1056, 1678, 1919 |
| Mox20I | TGGCCA | 1 cut(s) | 414 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1911 |
| MscI | TGGCCA | 1 cut(s) | 414 |
| MseI | TTAA | 5 cut(s) | 101, 843, 1562, 1659, 1824 |
| MslI | CAYNNNNRTG | 3 cut(s) | 522, 1362, 1947 |
| Msp20I | TGGCCA | 1 cut(s) | 414 |
| MspA1I | CMGCKG | 2 cut(s) | 1390, 1738 |
| MspI | CCGG | 1 cut(s) | 852 |
| MspR9I | CCNGG | 3 cut(s) | 978, 1144, 1526 |
| MunI | CAATTG | 1 cut(s) | 1319 |
| Mva1269I | GAATGC | 3 cut(s) | 1070, 1405, 1465 |
| MvaI | CCWGG | 3 cut(s) | 978, 1144, 1526 |
| MvnI | CGCG | 1 cut(s) | 778 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 260, 343, 370, 533, 1435 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeI | CATATG | 1 cut(s) | 556 |
| NdeII | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| NlaIV | GGNNCC | 6 cut(s) | 850, 1219, 1335, 1453, 1522, 1587 |
| NmuCI | GTSAC | 5 cut(s) | 116, 580, 1085, 1203, 1485 |
| NspI | RCATGY | 2 cut(s) | 725, 1726 |
| PaeR7I | CTCGAG | 1 cut(s) | 1530 |
| PagI | TCATGA | 1 cut(s) | 1327 |
| PaqCI | CACCTGC | 1 cut(s) | 1216 |
| PciI | ACATGT | 2 cut(s) | 721, 1722 |
| PciSI | GCTCTTC | 1 cut(s) | 387 |
| PctI | GAATGC | 3 cut(s) | 1070, 1405, 1465 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1911 |
| PfeI | GAWTC | 5 cut(s) | 71, 815, 1147, 1256, 1612 |
| PflFI | GACNNNGTC | 1 cut(s) | 996 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1901 |
| PfoI | TCCNGGA | 1 cut(s) | 1142 |
| PkrI | GCNGC | 2 cut(s) | 1213, 1389 |
| PleI | GAGTC | 3 cut(s) | 413, 1082, 1575 |
| PmaCI | CACGTG | 1 cut(s) | 1304 |
| PmlI | CACGTG | 1 cut(s) | 1304 |
| PpsI | GAGTC | 3 cut(s) | 413, 1082, 1575 |
| Ppu21I | YACGTR | 1 cut(s) | 1304 |
| PpuMI | RGGWCCY | 1 cut(s) | 1217 |
| PscI | ACATGT | 2 cut(s) | 721, 1722 |
| PshBI | ATTAAT | 1 cut(s) | 1824 |
| Psp1406I | AACGTT | 1 cut(s) | 1172 |
| Psp5II | RGGWCCY | 1 cut(s) | 1217 |
| Psp6I | CCWGG | 3 cut(s) | 976, 1142, 1524 |
| PspCI | CACGTG | 1 cut(s) | 1304 |
| PspFI | CCCAGC | 1 cut(s) | 1538 |
| PspGI | CCWGG | 3 cut(s) | 976, 1142, 1524 |
| PspN4I | GGNNCC | 6 cut(s) | 850, 1219, 1335, 1453, 1522, 1587 |
| PspPI | GGNCC | 1 cut(s) | 1217 |
| PspPPI | RGGWCCY | 1 cut(s) | 1217 |
| PspXI | VCTCGAGB | 1 cut(s) | 1530 |
| PstI | CTGCAG | 3 cut(s) | 1216, 1314, 1389 |
| PsuI | RGATCY | 4 cut(s) | 242, 467, 799, 1642 |
| PsyI | GACNNNGTC | 1 cut(s) | 996 |
| RsaI | GTAC | 4 cut(s) | 286, 568, 775, 1848 |
| RsaNI | GTAC | 4 cut(s) | 285, 567, 774, 1847 |
| RseI | CAYNNNNRTG | 3 cut(s) | 522, 1362, 1947 |
| SapI | GCTCTTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 5 cut(s) | 101, 843, 1562, 1659, 1824 |
| SatI | GCNGC | 2 cut(s) | 1212, 1388 |
| Sau3AI | GATC | 6 cut(s) | 242, 331, 467, 799, 934, 1642 |
| Sau96I | GGNCC | 1 cut(s) | 1217 |
| SchI | GAGTC | 3 cut(s) | 414, 1082, 1576 |
| ScrFI | CCNGG | 3 cut(s) | 978, 1144, 1526 |
| SduI | GDGCHC | 3 cut(s) | 315, 1384, 1525 |
| SfaNI | GCATC | 5 cut(s) | 373, 523, 734, 835, 1846 |
| SfcI | CTRYAG | 5 cut(s) | 213, 1212, 1310, 1385, 1842 |
| Sfr274I | CTCGAG | 1 cut(s) | 1530 |
| SinI | GGWCC | 1 cut(s) | 1217 |
| SlaI | CTCGAG | 1 cut(s) | 1530 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 522, 1362, 1947 |
| SmlI | CTYRAG | 2 cut(s) | 171, 1530 |
| SmoI | CTYRAG | 2 cut(s) | 171, 1530 |
| SsiI | CCGC | 4 cut(s) | 536, 1390, 1738, 1803 |
| SspI | AATATT | 3 cut(s) | 511, 700, 1461 |
| SspMI | CTAG | 5 cut(s) | 1280, 1373, 1419, 1590, 1646 |
| StyD4I | CCNGG | 3 cut(s) | 976, 1142, 1524 |
| StyI | CCWWGG | 3 cut(s) | 316, 375, 1231 |
| TaaI | ACNGT | 7 cut(s) | 284, 521, 848, 964, 1560, 1846, 1912 |
| TaiI | ACGT | 5 cut(s) | 1000, 1076, 1175, 1306, 1415 |
| TaqI | TCGA | 4 cut(s) | 18, 531, 1531, 1729 |
| TatI | WGTACW | 2 cut(s) | 284, 1846 |
| TfiI | GAWTC | 5 cut(s) | 71, 815, 1147, 1256, 1612 |
| Tru1I | TTAA | 5 cut(s) | 101, 843, 1562, 1659, 1824 |
| Tru9I | TTAA | 5 cut(s) | 101, 843, 1562, 1659, 1824 |
| TscAI | CASTG | 4 cut(s) | 415, 550, 589, 1389 |
| TseFI | GTSAC | 5 cut(s) | 116, 580, 1085, 1203, 1485 |
| TseI | GCWGC | 2 cut(s) | 1211, 1387 |
| Tsp45I | GTSAC | 5 cut(s) | 116, 580, 1085, 1203, 1485 |
| TspDTI | ATGAA | 6 cut(s) | 374, 659, 672, 1101, 1262, 1380 |
| TspRI | CASTG | 4 cut(s) | 415, 550, 589, 1389 |
| Tth111I | GACNNNGTC | 1 cut(s) | 996 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1901 |
| VpaK11BI | GGWCC | 1 cut(s) | 1217 |
| VspI | ATTAAT | 1 cut(s) | 1824 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1212 |
| XapI | RAATTY | 1 cut(s) | 940 |
| XbaI | TCTAGA | 1 cut(s) | 1645 |
| XceI | RCATGY | 2 cut(s) | 725, 1726 |
| XhoI | CTCGAG | 1 cut(s) | 1530 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1911 |
| XspI | CTAG | 5 cut(s) | 1280, 1373, 1419, 1590, 1646 |