Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8075098.1

Orthogroup ID

OG0003873

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 528

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8075098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atgtcagttggcagttctacagattgctctgcaaattacttggagagatccagaaatgccgacaaggctaaggaaaaaatagatgacagtacatataatggtgtgggtttagctgtgcccctgggaaaaaggattgatctgcctactgagcctcaacataaaacagagcatcaaaagcccatggctcttcattcttttaccctgccaagagtcagtggccagaaaaggttggtaaggaatggttgtatttccccacataacatagcaacaagatctaaacaattagatgtagagaataatacaagttccaagaatattgaacacagtcatgctgtcgatgcggtttccagtggttcaccatatgtcataggtacaagtgatgtggtcactgaagagaataaaagggaaagagcgaaagggaaaggggtaatggttcaaccttctacaccaaaggagaataatgaaagaattgttcatacatcaagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

162

Amino Acids

17.7

Weight (kDa)

9.12

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04790
fragaria_vesca	FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300 FvH4_4g00300
malus_domestica	MD04G1003700.v1.1
prunus_persica	Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1 Prupe.1G003200_v2.0.a1
pyrus_communis	pycom04g00380
rosa_chinensis	RchiOBHm_Chr4g0385131
rosa_laevigata	RLG00000010255
rosa_multiflora	Rmu_co8075098.1_g000001 Rmu_sc0003086.1_g000006 Rmu_sc0008734.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333050
rosa_rugosa	Rorug03G0299700 Rorug03G0299800
rosa_samantha	Rh4AG003000 Rh4BG002400 Rh4CG003200 Rh4DG002700
rosa_wichuraiana	Rw4G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	91, 373
AgsI	TTSAA	2 cut(s)	320, 437
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	178, 328
Bpu10I	CCTNAGC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	120, 121, 180
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	120, 121, 180
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	47, 136, 272
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	120, 121, 180
BssMI	GATC	3 cut(s)	47, 136, 272
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	89, 326
Bst6I	CTCTTC	2 cut(s)	192, 387
BstDEI	CTNAG	2 cut(s)	69, 147
BstDSI	CCRYGG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	50, 139, 275
BstMBI	GATC	3 cut(s)	47, 136, 272
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 148, 175, 338
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	47, 272
BstYI	RGATCY	2 cut(s)	47, 272
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	220, 355, 387
Csp6I	GTAC	2 cut(s)	90, 372
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	2 cut(s)	181, 329
CviJI	RGCY	6 cut(s)	68, 113, 151, 178, 185, 219
CviKI_1	RGCY	6 cut(s)	68, 113, 151, 178, 185, 219
CviQI	GTAC	2 cut(s)	90, 372
DdeI	CTNAG	2 cut(s)	69, 147
DpnI	GATC	3 cut(s)	49, 138, 274
DpnII	GATC	3 cut(s)	47, 136, 272
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	192, 387
EarI	CTCTTC	2 cut(s)	192, 387
Eco130I	CCWWGG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	184, 332
FatI	CATG	2 cut(s)	180, 328
FauNDI	CATATG	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	184, 332
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	89, 326
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 148, 175, 338
HpyF3I	CTNAG	2 cut(s)	69, 147
Hsp92II	CATG	2 cut(s)	184, 332
Kzo9I	GATC	3 cut(s)	47, 136, 272
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	6 cut(s)	64, 107, 134, 215, 233, 361
LweI	GCATC	2 cut(s)	178, 328
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	49, 138, 274
MboI	GATC	3 cut(s)	47, 136, 272
MboII	GAAGA	2 cut(s)	179, 404
MflI	RGATCY	2 cut(s)	47, 272
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	3 cut(s)	34, 281, 468
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	1 cut(s)	162
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	65, 148, 175, 338
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	47, 136, 272
NlaIII	CATG	2 cut(s)	184, 332
NmuCI	GTSAC	1 cut(s)	385
PasI	CCCWGGG	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	192
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	47, 272
RsaI	GTAC	2 cut(s)	91, 373
RsaNI	GTAC	2 cut(s)	90, 372
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	47, 136, 272
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	115, 230, 373, 442
SfaNI	GCATC	2 cut(s)	178, 328
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	34, 281, 468
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	89, 326
TaqI	TCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	34, 281, 468
TatI	WGTACW	1 cut(s)	89
TscAI	CASTG	3 cut(s)	220, 355, 394
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	179, 464, 477
TspRI	CASTG	3 cut(s)	220, 355, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.