Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015809

Physical Location & Seq

Genomic Coordinates Forward (+)

5923524 .. 5924581

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1050300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCCGGGAAAATGAGAGAAGCCCGTGAGGTGTTTGAGAAATGTCCTCAACCAGACTCTTGTTCGTATAATATTATGTTGGCTTGTTATTTGCACAATTTTGACGTTGATTCTGCTTTGGACTTCTTTCATAACATGCCTGTTAGGGACACGGCATCTTGGAAAACTATGATATGGGGGTTTGCTCAAAACGGTAAGATGAGGAGAGCTCGGGATTTGTTTTTGGTGATGCCAGAGAAGAATAGTGTCTCGTGGAGTGCAATGATTTCGGGGTATGTGAAATGTGGGGATTTGGACATGGTGGTCGAGTTGTTTGATGTAGCTTCGGTTAAGAGTGTTGTGGCGTGGACTGCTATGGTTACAGGGGAGATGCCAGTGAAAAACTTAGTATCTTGGAACGCTATGATATCGGGTTATGTTGAAAATTGTCGAGCTGAAGAGGGTTGGAAGGTTTTTAGGTCAACGATCGGATATGGGGTTAGGCCAAACCCGTCAAGTTTGAGTAGTGTTCTACTAGGTTGTAGTAACCTGTCTGCATTGCAGATGGGCAAGCAAGTACATCAGCTGAGTTATAAACTTCAGTTATATAATGATACAACTGCAGGGACCTCTTTGGTTAGCACGTATTGTAAGTGTGGGAATTTGGAGGATGCTTGGAAGTTGTTTGTTGAGATGGAGTGGAAGGATATTGTTACTTGGAATGCAATGATTGCTGGTTATGCTCAGCACGGAGCAGGATTAGTAGATCTTGGGGTTCAGTATTTTGATTCAATGGGAAAGGATTATGTTCAAGCGAAGCCAGACCACTATACGTGTATGGTAGACCTTCTTGGTCGAGCAGGTAGGATAGTTGGAGCGGTCGATCTTGTTAAGAAAATGCCATTTGAACCACATTCTGCTCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

303

Amino Acids

33.79

Weight (kDa)

6.59

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	83 - 106	3.6e-06	PPR repeat
PPR_2	PF13041	128 - 175	8.4e-07	PPR repeat family
PPR_1	PF12854	203 - 226	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16835
fragaria_vesca	FvH4_5g20040
malus_domestica	MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica	Prupe.5G060100_v2.0.a1
pyrus_communis	pycom06g04210
rosa_chinensis	RchiOBHm_Chr7g0204911
rosa_laevigata	RLG00000003422
rosa_multiflora	Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252680
rosa_rugosa	Rorug07G0086500
rosa_samantha	Rh7BG214100
rosa_wichuraiana	Rw7G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	830
AccBSI	CCGCTC	1 cut(s)	857
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	1 cut(s)	857
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	2 cut(s)	456, 563
AfaI	GTAC	1 cut(s)	558
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	4 cut(s)	422, 771, 791, 887
AluBI	AGCT	4 cut(s)	209, 323, 434, 565
AluI	AGCT	4 cut(s)	209, 323, 434, 565
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	253
Ama87I	CYCGRG	2 cut(s)	5, 210
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	2 cut(s)	6, 7
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	2 cut(s)	5, 210
AvaII	GGWCC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	2 cut(s)	538, 667
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BcnI	CCSGG	2 cut(s)	6, 7
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	830
BglII	AGATCT	1 cut(s)	745
BlpI	GCTNAGC	1 cut(s)	723
Bme1390I	CCNGG	2 cut(s)	6, 7
Bme18I	GGWCC	1 cut(s)	606
BmeT110I	CYCGRG	2 cut(s)	5, 210
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	6, 7
BmsI	GCATC	4 cut(s)	164, 219, 360, 640
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuMI	CCSGG	2 cut(s)	6, 7
BsaAI	YACGTR	2 cut(s)	624, 813
BsaJI	CCNNGG	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	3 cut(s)	267, 536, 711
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	655
BseMI	GCAATG	3 cut(s)	267, 536, 711
BseMII	CTCAG	2 cut(s)	557, 737
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	217
Bsh1285I	CGRYCG	2 cut(s)	468, 861
BshFI	GGCC	1 cut(s)	484
BsiEI	CGRYCG	2 cut(s)	468, 861
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	2 cut(s)	5, 210
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	161, 619
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	161, 619
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	2 cut(s)	5, 210
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	465, 745, 862, 902
Bsp1720I	GCTNAGC	1 cut(s)	723
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	558, 736
BspLI	GGNNCC	1 cut(s)	607
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	830
BsrBI	CCGCTC	1 cut(s)	857
BsrDI	GCAATG	3 cut(s)	267, 536, 711
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	4 cut(s)	465, 745, 862, 902
BssSI	CACGAG	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstBAI	YACGTR	2 cut(s)	624, 813
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	3 cut(s)	385, 566, 723
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	4 cut(s)	468, 748, 865, 905
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	465, 745, 862, 902
BstMCI	CGRYCG	2 cut(s)	468, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 710, 719
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	4, 5
BstSFI	CTRYAG	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	606
Cfr9I	CCCGGG	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	2 cut(s)	136, 298
CviJI	RGCY	8 cut(s)	23, 83, 209, 323, 434, 484, 565, 799
CviKI_1	RGCY	8 cut(s)	23, 83, 209, 323, 434, 484, 565, 799
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	385, 566, 723
DpnI	GATC	4 cut(s)	467, 747, 864, 904
DpnII	GATC	4 cut(s)	465, 745, 862, 902
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	456, 563
Eco88I	CYCGRG	2 cut(s)	5, 210
EcoICRI	GAGCTC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRV	GATATC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	139, 301
FaqI	GGGAC	2 cut(s)	161, 619
FatI	CATG	2 cut(s)	135, 297
FblI	GTMKAC	1 cut(s)	822
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	2 cut(s)	139, 301
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	3 cut(s)	56, 110, 767
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	348, 462, 823
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	2 cut(s)	212, 906
Hpy8I	GTNNAC	3 cut(s)	348, 462, 823
HpyAV	CCTTC	3 cut(s)	442, 676, 836
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	3 cut(s)	105, 623, 812
HpyCH4V	TGCA	6 cut(s)	94, 260, 536, 541, 602, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 710, 719
HpyF3I	CTNAG	3 cut(s)	385, 566, 723
HpySE526I	ACGT	3 cut(s)	105, 623, 812
Hsp92II	CATG	2 cut(s)	139, 301
Kzo9I	GATC	4 cut(s)	465, 745, 862, 902
LmnI	GCTCC	2 cut(s)	731, 854
LweI	GCATC	4 cut(s)	164, 219, 360, 640
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	3 cut(s)	105, 623, 812
MaeIII	GTNAC	3 cut(s)	358, 524, 691
MalI	GATC	4 cut(s)	467, 747, 864, 904
MbiI	CCGCTC	1 cut(s)	857
MboI	GATC	4 cut(s)	465, 745, 862, 902
MboII	GAAGA	2 cut(s)	250, 449
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	3 cut(s)	97, 424, 640
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	425, 832
MnlI	CCTC	6 cut(s)	22, 57, 195, 433, 619, 640
MseI	TTAA	2 cut(s)	330, 870
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	6, 7
Mva1269I	GAATGC	1 cut(s)	706
MwoI	GCNNNNNNNGC	3 cut(s)	350, 710, 719
NciI	CCSGG	2 cut(s)	6, 7
NdeII	GATC	4 cut(s)	465, 745, 862, 902
NlaIII	CATG	2 cut(s)	139, 301
NlaIV	GGNNCC	1 cut(s)	607
NspI	RCATGY	1 cut(s)	139
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	110, 767
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	2 cut(s)	624, 813
PpuMI	RGGWCCY	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	1 cut(s)	606
PspPPI	RGGWCCY	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	745
PvuI	CGATCG	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	330, 870
Sau3AI	GATC	4 cut(s)	465, 745, 862, 902
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	6, 7
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	4 cut(s)	164, 219, 360, 640
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	606
SmaI	CCCGGG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	97, 424, 640
SsiI	CCGC	1 cut(s)	857
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	4, 5
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	3 cut(s)	108, 626, 815
TaqI	TCGA	5 cut(s)	306, 430, 835, 861, 901
TasI	AATT	3 cut(s)	97, 424, 640
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	110, 767
Tru1I	TTAA	2 cut(s)	330, 870
Tru9I	TTAA	2 cut(s)	330, 870
TscAI	CASTG	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	744
TspMI	CCCGGG	1 cut(s)	5
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	139
XmaI	CCCGGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.