Rorug07G0086500

Pentatricopeptide repeat-containing protein At4g16835

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6788043 .. 6789182
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0086500.1

Sequence Viewer

Length: 1140 bp
ATGGAGTACCTCCCGCAAGACCTAATATATGAAATTGTGTTACGACTCCCTGTGAAGGGTCTGATCCGATTTTCTTTTGTTTCGAAGCTATGGAAGGCTGTGATCTACAGCAAAGACTTCATTAAAGAGCATCAGCAACGCCGCTCTATCAACAACTCCAAGAAAGATTTCACCCTCATACGCCATGGTGTTCAGTCCGGAGATTTTCATCACTTCTATGCAGCCTCCTTTTCTGCTGATACATTAGAGGAAGAACAACAAATCGAGCATCCAATATATTCCCTTGAAGAAGAGTATGGACTTGGGCTTCATACTCGTATCATTACTGTCTGCCATGGATTGGTTTTACTAGGTGTTCTGTGTAGGAAGGCTACTAGTAATTATGTGCACCTCTATGTATGGAACCCGGTGATCGCAAAGCACAGACACATATCCCAGCCCATATGGCCAGAAGGAGAAGACCCGCATTTTACGTATGGAATAGGTTATCATTGTGACGAAGATGACTTAAAGGTGTTAGTTTTGAGGCAAACTGGTAGACGGCCGATTTGGAAAATCCAGTTTATAGTTTGCAGCGTAGCAACAGGCCAATGGAAAAGGATAACAAAACTTCCACCTAGTAATCTTCAAGTTAATATATTTTGTTATTATAATATGGTGTCGTTGAGCGATTCTCGTGTGGCTTGGCTGATGGCAGATGTTGATTATATGGATCTGTACCATGTTGTGACTTTTGACCTTGTGAAGGAGGAGTATAATACTTATCGGGTTCCGATTTCTATTCGTGGTCCAGGGGCTATAACGCTGATGGAACTGGGAGGCTTCCTGTGCTTTAGGCATCGTCAAAATATTTGGTTCATGAAGGATTCTTCTTGGTCGACCGAGCCTATTCCTCTGAATAATTCCAGGCCTCTATTCTTTGATGGTGAGAGGTTTCTGTTGAGCAGGTTTTCTGGTGATCATAAGGAGCTCTTTTGGTACAACATAAAGACACAAGATCATCAACATGTGACGCGAACTGGTGACTATGCTGGAAGCTTTGATGGGGCTACTACTCAGACAGCTTTCATTTGTGGAGGAAACCTCCGTTTTCTCCTCGATGGTCAACCTGATCTGTATGCCTATTTCTGTCGTCCCTAA

Protein Analysis

379

Amino Acids

44.22

Weight (kDa)

6.99

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 1.2e-07 F-box domain
FBA_1 PF07734 72 - 260 1.4e-08 F-box associated beta propeller domain
FBA_3 PF08268 111 - 335 2.9e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16835
fragaria_vesca FvH4_5g20040
malus_domestica MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica Prupe.5G060100_v2.0.a1
pyrus_communis pycom06g04210
rosa_chinensis RchiOBHm_Chr7g0204911
rosa_laevigata RLG00000003422
rosa_multiflora Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii Rroxscaffold_3G00252680
rosa_rugosa Rorug07G0086500
rosa_samantha Rh7BG214100
rosa_wichuraiana Rw7G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 936
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 2 cut(s) 538, 878
AccII CGCG 1 cut(s) 1015
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 3 cut(s) 14, 142, 464
AclWI GGATC 2 cut(s) 58, 720
AcoI YGGCCR 2 cut(s) 446, 542
AfaI GTAC 3 cut(s) 8, 719, 980
AfiI CCNNNNNNNGG 4 cut(s) 55, 56, 340, 745
AflIII ACRYGT 1 cut(s) 1006
AgsI TTSAA 2 cut(s) 287, 629
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 790, 905
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 4 cut(s) 88, 970, 1038, 1064
AluI AGCT 4 cut(s) 88, 970, 1038, 1064
Alw21I GWGCWC 2 cut(s) 390, 972
Alw44I GTGCAC 1 cut(s) 386
AlwI GGATC 2 cut(s) 58, 720
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 4 cut(s) 446, 542, 586, 908
ApaLI GTGCAC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 221, 573
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 788
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 5 cut(s) 163, 421, 938, 968, 1034
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 448
BanII GRGCYC 1 cut(s) 972
BauI CACGAG 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 390, 972
BbvI GCAGC 2 cut(s) 233, 585
BccI CCATC 5 cut(s) 685, 802, 917, 1037, 1094
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 2 cut(s) 792, 907
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 1 cut(s) 407
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 350, 375, 618
BfmI CTRYAG 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 936
BglI GCCNNNNNGGC 1 cut(s) 445
BisI GCNGC 3 cut(s) 142, 222, 574
BlsI GCNGC 3 cut(s) 143, 223, 575
Bme1390I CCNGG 3 cut(s) 407, 792, 907
Bme18I GGWCC 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 788
BmiI GGNNCC 2 cut(s) 404, 771
BmrFI CCNGG 3 cut(s) 407, 792, 907
BmrI ACTGGG 1 cut(s) 824
BmsI GCATC 3 cut(s) 139, 277, 847
BmuI ACTGGG 1 cut(s) 824
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 4 cut(s) 658, 690, 1068, 1100
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 184, 334, 791
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 56, 340, 745
Bse1I ACTGG 4 cut(s) 538, 559, 819, 1024
Bse8I GATNNNNATC 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 2 cut(s) 792, 907
BseDI CCNNGG 3 cut(s) 184, 334, 791
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 4 cut(s) 55, 56, 340, 745
BseMII CTCAG 1 cut(s) 1070
BseNI ACTGG 4 cut(s) 538, 559, 819, 1024
BseRI GAGGAG 2 cut(s) 764, 1085
BseSI GKGCMC 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 542
BseXI GCAGC 2 cut(s) 233, 585
BseYI CCCAGC 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 1015
Bsh1285I CGRYCG 2 cut(s) 545, 882
BshFI GGCC 4 cut(s) 448, 544, 588, 910
BsiEI CGRYCG 2 cut(s) 545, 882
BsiHKAI GWGCWC 2 cut(s) 390, 972
BsiSI CCGG 2 cut(s) 198, 407
BslFI GGGAC 1 cut(s) 1119
BslI CCNNNNNNNGG 4 cut(s) 55, 56, 340, 745
BsmFI GGGAC 1 cut(s) 1119
BsnI GGCC 4 cut(s) 448, 544, 588, 910
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 390, 972
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
Bsp19I CCATGG 2 cut(s) 184, 334
BspACI CCGC 3 cut(s) 14, 142, 464
BspANI GGCC 4 cut(s) 448, 544, 588, 910
BspCNI CTCAG 1 cut(s) 1069
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 2 cut(s) 404, 771
BspMI ACCTGC 1 cut(s) 936
BspPI GGATC 2 cut(s) 58, 720
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 4 cut(s) 538, 559, 819, 1024
BssECI CCNNGG 3 cut(s) 184, 334, 791
BssMI GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 2 cut(s) 184, 334
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 2 cut(s) 792, 907
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 1056
BstDSI CCRYGG 2 cut(s) 184, 334
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 1015
BstKTI GATC 7 cut(s) 66, 105, 414, 715, 961, 1000, 1114
BstMBI GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
BstMCI CGRYCG 2 cut(s) 545, 882
BstMWI GCNNNNNNNGC 2 cut(s) 445, 828
BstNI CCWGG 2 cut(s) 792, 907
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 3 cut(s) 405, 790, 905
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 390
BstSNI TACGTA 1 cut(s) 474
BstUI CGCG 1 cut(s) 1015
BstV1I GCAGC 2 cut(s) 233, 585
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BstZI CGGCCG 1 cut(s) 542
BsuRI GGCC 4 cut(s) 448, 544, 588, 910
BtgI CCRYGG 2 cut(s) 184, 334
BtsCI GGATG 1 cut(s) 268
BveI ACCTGC 1 cut(s) 936
CciI TCATGA 1 cut(s) 858
Cfr13I GGNCC 1 cut(s) 788
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 7, 718, 979
CviAII CATG 5 cut(s) 185, 335, 722, 859, 1007
CviQI GTAC 3 cut(s) 7, 718, 979
DdeI CTNAG 1 cut(s) 1056
DpnI GATC 7 cut(s) 65, 104, 413, 714, 960, 999, 1113
DpnII GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
EaeI YGGCCR 2 cut(s) 446, 542
EagI CGGCCG 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 970
EclXI CGGCCG 1 cut(s) 542
Eco105I TACGTA 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 184, 334
Eco147I AGGCCT 1 cut(s) 910
Eco24I GRGCYC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 788
Eco52I CGGCCG 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 970
EcoICRI GAGCTC 1 cut(s) 970
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 790, 905
EcoT14I CCWWGG 2 cut(s) 184, 334
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 184, 334
FaeI CATG 5 cut(s) 188, 338, 725, 862, 1010
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 1 cut(s) 1119
FatI CATG 5 cut(s) 184, 334, 721, 858, 1006
FauI CCCGC 2 cut(s) 21, 471
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 1 cut(s) 958
FblI GTMKAC 2 cut(s) 538, 878
Fnu4HI GCNGC 3 cut(s) 142, 222, 574
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 3 cut(s) 142, 222, 574
FspBI CTAG 3 cut(s) 350, 375, 618
GluI GCNGC 3 cut(s) 142, 222, 574
GsaI CCCAGC 1 cut(s) 439
HaeIII GGCC 4 cut(s) 448, 544, 588, 910
HapII CCGG 2 cut(s) 198, 407
HgaI GACGC 1 cut(s) 1021
Hin1II CATG 5 cut(s) 188, 338, 725, 862, 1010
HincII GTYRAC 2 cut(s) 879, 1106
HindII GTYRAC 2 cut(s) 879, 1106
HindIII AAGCTT 1 cut(s) 1036
HinfI GANTC 3 cut(s) 45, 671, 866
HpaII CCGG 2 cut(s) 198, 407
HphI GGTGA 5 cut(s) 163, 421, 938, 968, 1034
Hpy166II GTNNAC 4 cut(s) 388, 539, 879, 1106
Hpy188I TCNGA 5 cut(s) 63, 68, 774, 897, 1059
Hpy188III TCNNGA 2 cut(s) 198, 859
Hpy8I GTNNAC 4 cut(s) 388, 539, 879, 1106
HpyAV CCTTC 6 cut(s) 49, 88, 361, 446, 739, 856
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 3 cut(s) 221, 388, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 828
HpyF3I CTNAG 1 cut(s) 1056
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 188, 338, 725, 862, 1010
Kpn2I TCCGGA 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 2 cut(s) 233, 585
LweI GCATC 3 cut(s) 139, 277, 847
MaeI CTAG 3 cut(s) 350, 375, 618
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 5 cut(s) 39, 494, 727, 1009, 1022
MalI GATC 7 cut(s) 65, 104, 413, 714, 960, 999, 1113
MbiI CCGCTC 1 cut(s) 144
MboI GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
MboII GAAGA 7 cut(s) 263, 299, 302, 470, 512, 617, 861
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 2 cut(s) 390, 972
MlsI TGGCCA 1 cut(s) 448
MluCI AATT 3 cut(s) 33, 379, 901
MluNI TGGCCA 1 cut(s) 448
MlyI GAGTC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 448
MroI TCCGGA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 448
MseI TTAA 3 cut(s) 123, 509, 633
MslI CAYNNNNRTG 3 cut(s) 216, 393, 1005
Msp20I TGGCCA 1 cut(s) 448
MspI CCGG 2 cut(s) 198, 407
MspR9I CCNGG 3 cut(s) 407, 792, 907
MvaI CCWGG 2 cut(s) 792, 907
MvnI CGCG 1 cut(s) 1015
MwoI GCNNNNNNNGC 2 cut(s) 445, 828
NciI CCSGG 1 cut(s) 407
NcoI CCATGG 2 cut(s) 184, 334
NdeI CATATG 1 cut(s) 443
NdeII GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
NlaIII CATG 5 cut(s) 188, 338, 725, 862, 1010
NlaIV GGNNCC 2 cut(s) 404, 771
NmuCI GTSAC 4 cut(s) 494, 727, 1009, 1022
NspI RCATGY 1 cut(s) 1010
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 1 cut(s) 858
PceI AGGCCT 1 cut(s) 910
PciI ACATGT 1 cut(s) 1006
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 671, 866
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 3 cut(s) 143, 223, 575
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 474
PscI ACATGT 1 cut(s) 1006
PsiI TTATAA 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 790, 905
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 2 cut(s) 790, 905
PspN4I GGNNCC 2 cut(s) 404, 771
PspPI GGNCC 1 cut(s) 788
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 3 cut(s) 8, 719, 980
RsaNI GTAC 3 cut(s) 7, 718, 979
RseI CAYNNNNRTG 3 cut(s) 216, 393, 1005
SacI GAGCTC 1 cut(s) 972
SalI GTCGAC 1 cut(s) 877
SaqAI TTAA 3 cut(s) 123, 509, 633
SatI GCNGC 3 cut(s) 142, 222, 574
Sau3AI GATC 7 cut(s) 63, 102, 411, 712, 958, 997, 1111
Sau96I GGNCC 1 cut(s) 788
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 3 cut(s) 407, 792, 907
SduI GDGCHC 2 cut(s) 390, 972
SfaNI GCATC 3 cut(s) 139, 277, 847
SfcI CTRYAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 3 cut(s) 216, 393, 1005
SnaBI TACGTA 1 cut(s) 474
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 3 cut(s) 33, 379, 901
SseBI AGGCCT 1 cut(s) 910
SsiI CCGC 3 cut(s) 14, 142, 464
SspI AATATT 1 cut(s) 850
SspMI CTAG 3 cut(s) 350, 375, 618
SstI GAGCTC 1 cut(s) 972
StuI AGGCCT 1 cut(s) 910
StyD4I CCNGG 3 cut(s) 405, 790, 905
StyI CCWWGG 2 cut(s) 184, 334
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 476
TaqI TCGA 4 cut(s) 83, 264, 878, 1098
TaqII GACCGA 1 cut(s) 896
TasI AATT 3 cut(s) 33, 379, 901
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 671, 866
Tru1I TTAA 3 cut(s) 123, 509, 633
Tru9I TTAA 3 cut(s) 123, 509, 633
TseFI GTSAC 4 cut(s) 494, 727, 1009, 1022
TseI GCWGC 2 cut(s) 221, 573
Tsp45I GTSAC 4 cut(s) 494, 727, 1009, 1022
TspDTI ATGAA 7 cut(s) 45, 109, 197, 299, 847, 875, 1057
TspGWI ACGGA 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 340
VneI GTGCAC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 743
XceI RCATGY 1 cut(s) 1010
XmiI GTMKAC 2 cut(s) 538, 878
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 3 cut(s) 350, 375, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.