Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015809

Physical Location & Seq

Genomic Coordinates Forward (+)

18272206 .. 18274239

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGACATGTCTTAGAAGAAGCACAAGAGCACAGCCCTCACTGCCGCTCAAAACTTTCCCCAATGCCAAAAACCAAAGCTCTTTCCTCTCCACCATCACAATCCAAAACCCACAACCCAATCAAAACAACCACCCCATTCCTCCACACAAAACCCACTTGGTTTCCACCAGTAACATGACCCAGAAACTCACACCAACCCAATTTTGCAATGAGTCTACACACTTTGATCCCCACCAATTTCGCAGTGTCATTGCGTCGAATAAGTTGATCACCAGCTACATTCGTTCCGGGGATTTAGATTCTGCACTTCAGGTGTTTGAGAAGATGACTGTTAGAACCACAACTAGTTGGAATTCGATTTTAGCCGGGTATGCGAAAATTCCCGGGAAAGTGAAAGAAGCCCGCCAACTGTTTGATAAAATTCCTCTACCAGACACTTGCTCATATAATAGTATGCTGGCTTGTTATTTACGTAATCTTGGTGTTGGTTCTGCTAAGGAGTTCTTTGATTTGATGCCTGTTAAGGACATTGCATCTTGGAATACCATGATATCGGGTTTTGCTCAGAATGGGGAGATGAGGGAAGCACAGAAGTTGTTTTTGTTGATGCCCGAGAAGAACAGTGTCTCGTGGAGTGCGTTGGTTTCGGGGTATGTGAAATGTGGGGATTTGGACTCGGCGGTGAAATGGTTTGAGGTTGCACCGGTTAAGAGTGTTGTGGCTTGGACGGCTATGGTTACTGGGTATATGAAGTTTGGGAAGATTGGTGTAGCAGAGAAGTTGTTTAGAGAGATGCCTGAGAAAAATTTAGTAACATGGAATGCTATGGTTGCGGGGTATGTGGAAAACTGTCAAGCTGAAGAGGGTTTGAAGCTTTTCAGGTCAATGATTGGATATGGGGTTAGGCCAAATGCATTGAGTTTGAGTAGTGCTCTACTGGGTTGTAGCAACCTGTCTGCGCTGCAAATGGGTAGGCAAGTACATCAGCTGCTCTATAAGTTTGAATTATATAATGATACAACTTCAGGAACTGCATTGGTTAGTATGTATTGTAAGTGTGGGAATTTGGAGGATGCGTGGAAGTTTTTCATTGAGATGACACGAAAAGATGTTGTTACTTGGAATGCAATGATTGCTGGTTATGCTCAACATGGGGAAGGTTTAAAAGCTCTCAGTTTGTTTGACCAGATGAGGAATGAGGGAGTAAAACCAGATTGGATAACGTTTGTTTCTGTGTTAATGGCTTGCAATCATGCAGGACTTGTAGATCTTGGGGTTCAACATTTTGATTCCATGGCAAGACAGTATCAAGTTGAAGCTAAGCCAGAGCACTATACATGTATGGTAGACCTTCTTGGTCGTGCTGGTAAGCTAGTTGAAGCTGTAGCTTTGATAAAGAAAATGCCATTTGAACCACATTCTGCCATTTTTGGAACTCTATTGGGTGCCTGTCGGATGCACAAGAACTTAGAATTAGCTGAGTTTGCTGCCGAGAAATTGCTTGATCTTGATCCAACGAGTGCAGCTGGTTATGTTCAACTTGCTAATGTTTATGCTGCAACAAATAGGTGGGACCTTGTCGGCAAGGTCAGGCGATCGATGAAAGAAAATAGGGTCGTGAAGACACCTGGCTATAGTTGGATTGAGGTAAAGAGTGTAGTCCATGAGTTCAGATCAGGTGACAGGGCTCACCCAGAATTGGCATCTATACATGAAAAACTGTCTGAACTGGATCAGAAAATGAAGTTGGCAGGCTATGTTCCAGATCTTGAATTTGCATTACATGATGTTGGGGAAGAGCAGAAACAGCAGCTGCTATTATGGCACAGTGAAAAACTAGCAATTGCTTTTGGGCTTATACACGTGCCTTTAGGGATGCCAATTCGCATTTTCAAAAACTTGAGAGTATGTGGGGATTGCCATCATGCAGTCAAGCATATATCAGCAATTGAGAAAAGAGAAATCATTCTCAGAGATACTACAAGGTTCCATCATTTCAAAAATGGGGTTTGTTCTTGTGGTGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

677

Amino Acids

76.02

Weight (kDa)

8.8

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	175 - 207	3.9e-06	PPR repeat family
PPR	PF01535	179 - 207	6.2e-08	PPR repeat
PPR_2	PF13041	238 - 269	9.7e-06	PPR repeat family
PPR	PF01535	240 - 269	8.6e-06	PPR repeat
PPR_2	PF13041	269 - 316	6.1e-08	PPR repeat family
PPR_2	PF13041	369 - 416	6.4e-14	PPR repeat family
PPR_3	PF13812	369 - 416	4.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	372 - 402	2.7e-09	PPR repeat
E_motif	PF20431	487 - 549	3.8e-17	E motif
DYW_deaminase	PF14432	585 - 677	4.9e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16835
fragaria_vesca	FvH4_5g20040
malus_domestica	MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica	Prupe.5G060100_v2.0.a1
pyrus_communis	pycom06g04210
rosa_chinensis	RchiOBHm_Chr7g0204911
rosa_laevigata	RLG00000003422
rosa_multiflora	Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252680
rosa_rugosa	Rorug07G0086500
rosa_samantha	Rh7BG214100
rosa_wichuraiana	Rw7G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1445
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	215, 1347
AciI	CCGC	4 cut(s)	44, 403, 680, 833
AclI	AACGTT	1 cut(s)	1223
AclWI	GGATC	3 cut(s)	221, 1505, 1740
AcsI	RAATTY	6 cut(s)	352, 378, 420, 805, 1063, 1772
AcuI	CTGAAG	3 cut(s)	293, 879, 1008
AcvI	CACGTG	1 cut(s)	1864
AfaI	GTAC	1 cut(s)	981
AfiI	CCNNNNNNNGG	1 cut(s)	1699
AflIII	ACRYGT	3 cut(s)	5, 1337, 1861
AgeI	ACCGGT	1 cut(s)	703
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	1627
AjuI	GAANNNNNNNTTGG	2 cut(s)	1730, 1762
Alw21I	GWGCWC	3 cut(s)	31, 934, 1332
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	3 cut(s)	221, 1505, 1740
AlwNI	CAGNNNCTG	2 cut(s)	1031, 1813
Ama87I	CYCGRG	2 cut(s)	383, 611
AoxI	GGCC	1 cut(s)	905
ApeKI	GCWGC	7 cut(s)	961, 988, 1487, 1523, 1556, 1810, 1813
ApoI	RAATTY	6 cut(s)	352, 378, 420, 805, 1063, 1772
AsiGI	ACCGGT	1 cut(s)	703
Asp700I	GAANNNNTTC	3 cut(s)	875, 1085, 1965
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	1 cut(s)	1573
AsuC2I	CCSGG	4 cut(s)	289, 367, 384, 385
AsuHPI	GGTGA	5 cut(s)	262, 694, 1682, 1691, 2033
AvaI	CYCGRG	2 cut(s)	383, 611
AvaII	GGWCC	1 cut(s)	1573
BanI	GGYRCC	1 cut(s)	1445
BanII	GRGCYC	1 cut(s)	1690
BauI	CACGAG	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	1864
BbsI	GAAGAC	1 cut(s)	1628
Bbv12I	GWGCWC	3 cut(s)	31, 934, 1332
BbvI	GCAGC	7 cut(s)	948, 975, 1474, 1535, 1543, 1800, 1822
BccI	CCATC	3 cut(s)	101, 1929, 1998
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	1629
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	4 cut(s)	289, 367, 384, 385
BcoDI	GTCTC	1 cut(s)	631
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	3 cut(s)	345, 1373, 1838
BfmI	CTRYAG	2 cut(s)	1383, 1633
BglII	AGATCT	2 cut(s)	1267, 1765
BisI	GCNGC	8 cut(s)	44, 962, 989, 1488, 1524, 1557, 1811, 1814
BlpI	GCTNAGC	1 cut(s)	1320
BlsI	GCNGC	8 cut(s)	45, 963, 990, 1489, 1525, 1558, 1812, 1815
Bme1390I	CCNGG	5 cut(s)	289, 367, 384, 385, 1629
Bme18I	GGWCC	1 cut(s)	1573
BmeT110I	CYCGRG	2 cut(s)	383, 611
BmgT120I	GGNCC	1 cut(s)	1573
BmiI	GGNNCC	3 cut(s)	1447, 1574, 1988
BmrFI	CCNGG	5 cut(s)	289, 367, 384, 385, 1629
BmrI	ACTGGG	2 cut(s)	750, 947
BmsI	GCATC	8 cut(s)	504, 542, 597, 783, 1063, 1446, 1712, 1866
BmuI	ACTGGG	2 cut(s)	750, 947
BpiI	GAAGAC	1 cut(s)	1628
BplI	GAGNNNNNCTC	2 cut(s)	916, 948
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	1320
BpuEI	CTTGAG	1 cut(s)	1921
BpuMI	CCSGG	4 cut(s)	289, 367, 384, 385
Bsa29I	ATCGAT	1 cut(s)	1598
BsaAI	YACGTR	2 cut(s)	473, 1864
BsaBI	GATNNNNATC	2 cut(s)	1509, 1920
BsaJI	CCNNGG	3 cut(s)	288, 383, 1293
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	1061, 1091
Bsc4I	CCNNNNNNNGG	1 cut(s)	1699
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	5 cut(s)	168, 745, 942, 1734, 2033
Bse3DI	GCAATG	4 cut(s)	214, 249, 528, 1134
Bse8I	GATNNNNATC	2 cut(s)	1509, 1920
BseBI	CCWGG	1 cut(s)	1629
BseCI	ATCGAT	1 cut(s)	1598
BseDI	CCNNGG	3 cut(s)	288, 383, 1293
BseGI	GGATG	3 cut(s)	1078, 1461, 1881
BseJI	GATNNNNATC	2 cut(s)	1509, 1920
BseLI	CCNNNNNNNGG	1 cut(s)	1699
BseMI	GCAATG	4 cut(s)	214, 249, 528, 1134
BseMII	CTCAG	5 cut(s)	578, 789, 1186, 1470, 1984
BseNI	ACTGG	5 cut(s)	168, 745, 942, 1734, 2033
BseXI	GCAGC	7 cut(s)	948, 975, 1474, 1535, 1543, 1800, 1822
BsgI	GTGCAG	2 cut(s)	288, 1542
Bsh1285I	CGRYCG	1 cut(s)	1598
BshFI	GGCC	1 cut(s)	907
BshNI	GGYRCC	1 cut(s)	1445
BshTI	ACCGGT	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	1598
BsiEI	CGRYCG	1 cut(s)	1598
BsiHKAI	GWGCWC	3 cut(s)	31, 934, 1332
BsiHKCI	CYCGRG	2 cut(s)	383, 611
BsiSI	CCGG	4 cut(s)	288, 366, 384, 704
BslFI	GGGAC	1 cut(s)	1586
BslI	CCNNNNNNNGG	1 cut(s)	1699
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	1586
BsmI	GAATGC	2 cut(s)	826, 1129
BsnI	GGCC	1 cut(s)	907
BsoBI	CYCGRG	2 cut(s)	383, 611
Bsp1286I	GDGCHC	4 cut(s)	31, 934, 1332, 1690
Bsp143I	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
Bsp1720I	GCTNAGC	1 cut(s)	1320
Bsp19I	CCATGG	1 cut(s)	1293
BspACI	CCGC	4 cut(s)	44, 403, 680, 833
BspANI	GGCC	1 cut(s)	907
BspCNI	CTCAG	5 cut(s)	577, 790, 1185, 1471, 1983
BspDI	ATCGAT	1 cut(s)	1598
BspLI	GGNNCC	3 cut(s)	1447, 1574, 1988
BspPI	GGATC	3 cut(s)	221, 1505, 1740
BspQI	GCTCTTC	1 cut(s)	1791
BspT107I	GGYRCC	1 cut(s)	1445
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	4 cut(s)	214, 249, 528, 1134
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	5 cut(s)	168, 745, 942, 1734, 2033
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	3 cut(s)	288, 383, 1293
BssMI	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
BssSI	CACGAG	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	1293
Bst2BI	CACGAG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	1629
Bst4CI	ACNGT	7 cut(s)	331, 411, 623, 851, 1305, 1722, 1829
Bst6I	CTCTTC	2 cut(s)	855, 1791
BstAPI	GCANNNNNTGC	1 cut(s)	1133
BstBAI	YACGTR	2 cut(s)	473, 1864
BstC8I	GCNNGC	4 cut(s)	403, 459, 1246, 1753
BstDEI	CTNAG	9 cut(s)	11, 495, 564, 798, 1172, 1320, 1468, 1479, 1970
BstDSI	CCRYGG	1 cut(s)	1293
BstF5I	GGATG	3 cut(s)	1078, 1461, 1881
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	9 cut(s)	229, 270, 1270, 1507, 1513, 1598, 1676, 1735, 1768
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
BstMCI	CGRYCG	1 cut(s)	1598
BstMWI	GCNNNNNNNGC	9 cut(s)	40, 371, 728, 830, 1133, 1142, 1484, 1807, 1822
BstNI	CCWGG	1 cut(s)	1629
BstNSI	RCATGY	2 cut(s)	9, 1341
BstSCI	CCNGG	5 cut(s)	287, 365, 382, 383, 1627
BstSFI	CTRYAG	2 cut(s)	1383, 1633
BstSNI	TACGTA	1 cut(s)	473
BstV1I	GCAGC	7 cut(s)	948, 975, 1474, 1535, 1543, 1800, 1822
BstV2I	GAAGAC	1 cut(s)	1628
BstX2I	RGATCY	2 cut(s)	1267, 1765
BstYI	RGATCY	2 cut(s)	1267, 1765
Bsu15I	ATCGAT	1 cut(s)	1598
BsuRI	GGCC	1 cut(s)	907
BsuTUI	ATCGAT	1 cut(s)	1598
BtgI	CCRYGG	1 cut(s)	1293
BtsCI	GGATG	3 cut(s)	1078, 1461, 1881
BtsI	GCAGTG	2 cut(s)	38, 250
BtsIMutI	CAGTG	4 cut(s)	38, 250, 628, 1834
Cac8I	GCNNGC	4 cut(s)	403, 459, 1246, 1753
CaiI	CAGNNNCTG	2 cut(s)	1031, 1813
CfoI	GCGC	1 cut(s)	961
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	1573
Cfr9I	CCCGGG	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	1598
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	980
CspAI	ACCGGT	1 cut(s)	703
CviQI	GTAC	1 cut(s)	980
DdeI	CTNAG	9 cut(s)	11, 495, 564, 798, 1172, 1320, 1468, 1479, 1970
DpnI	GATC	9 cut(s)	228, 269, 1269, 1506, 1512, 1597, 1675, 1734, 1767
DpnII	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
DraI	TTTAAA	1 cut(s)	1164
Eam1104I	CTCTTC	2 cut(s)	855, 1791
EarI	CTCTTC	2 cut(s)	855, 1791
Eco105I	TACGTA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	1293
Eco24I	GRGCYC	1 cut(s)	1690
Eco32I	GATATC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	1573
Eco57I	CTGAAG	3 cut(s)	293, 879, 1008
Eco72I	CACGTG	1 cut(s)	1864
Eco88I	CYCGRG	2 cut(s)	383, 611
EcoO109I	RGGNCCY	1 cut(s)	1573
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	1627
EcoRV	GATATC	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	1293
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	1690
ErhI	CCWWGG	1 cut(s)	1293
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	1586
FauI	CCCGC	2 cut(s)	410, 826
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	2 cut(s)	215, 1347
Fnu4HI	GCNGC	8 cut(s)	44, 962, 989, 1488, 1524, 1557, 1811, 1814
FokI	GGATG	3 cut(s)	1085, 1468, 1888
FriOI	GRGCYC	1 cut(s)	1690
Fsp4HI	GCNGC	8 cut(s)	44, 962, 989, 1488, 1524, 1557, 1811, 1814
FspBI	CTAG	3 cut(s)	345, 1373, 1838
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	8 cut(s)	44, 962, 989, 1488, 1524, 1557, 1811, 1814
HaeIII	GGCC	1 cut(s)	907
HapII	CCGG	4 cut(s)	288, 366, 384, 704
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	961
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	4 cut(s)	212, 299, 674, 1289
HpaII	CCGG	4 cut(s)	288, 366, 384, 704
HphI	GGTGA	5 cut(s)	262, 694, 1682, 1691, 2033
Hpy166II	GTNNAC	2 cut(s)	216, 1348
Hpy188I	TCNGA	6 cut(s)	567, 1455, 1673, 1726, 1737, 1973
Hpy188III	TCNNGA	5 cut(s)	1026, 1508, 1618, 1763, 1769
Hpy8I	GTNNAC	2 cut(s)	216, 1348
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	1151, 1361
HpyCH4III	ACNGT	7 cut(s)	331, 411, 623, 851, 1305, 1722, 1829
HpyCH4IV	ACGT	3 cut(s)	472, 1223, 1863
HpyF10VI	GCNNNNNNNGC	9 cut(s)	40, 371, 728, 830, 1133, 1142, 1484, 1807, 1822
HpyF3I	CTNAG	9 cut(s)	11, 495, 564, 798, 1172, 1320, 1468, 1479, 1970
HpySE526I	ACGT	3 cut(s)	472, 1223, 1863
HspAI	GCGC	1 cut(s)	959
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
LguI	GCTCTTC	1 cut(s)	1791
Lsp1109I	GCAGC	7 cut(s)	948, 975, 1474, 1535, 1543, 1800, 1822
LweI	GCATC	8 cut(s)	504, 542, 597, 783, 1063, 1446, 1712, 1866
MaeI	CTAG	3 cut(s)	345, 1373, 1838
MaeII	ACGT	3 cut(s)	472, 1223, 1863
MaeIII	GTNAC	5 cut(s)	170, 736, 811, 1114, 1679
MalI	GATC	9 cut(s)	228, 269, 1269, 1506, 1512, 1597, 1675, 1734, 1767
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
MboII	GAAGA	7 cut(s)	27, 334, 628, 772, 872, 1633, 1808
MfeI	CAATTG	2 cut(s)	1842, 1947
MflI	RGATCY	2 cut(s)	1267, 1765
MhlI	GDGCHC	4 cut(s)	31, 934, 1332, 1690
MlyI	GAGTC	2 cut(s)	221, 668
MmeI	TCCRAC	4 cut(s)	329, 1433, 1538, 1619
Mph1103I	ATGCAT	1 cut(s)	916
MroXI	GAANNNNTTC	3 cut(s)	875, 1085, 1965
MseI	TTAA	4 cut(s)	522, 708, 1163, 1238
MslI	CAYNNNNRTG	1 cut(s)	1094
MspA1I	CMGCKG	3 cut(s)	988, 1526, 1813
MspI	CCGG	4 cut(s)	288, 366, 384, 704
MspR9I	CCNGG	5 cut(s)	289, 367, 384, 385, 1629
MunI	CAATTG	2 cut(s)	1842, 1947
Mva1269I	GAATGC	2 cut(s)	826, 1129
MvaI	CCWGG	1 cut(s)	1629
MwoI	GCNNNNNNNGC	9 cut(s)	40, 371, 728, 830, 1133, 1142, 1484, 1807, 1822
NciI	CCSGG	4 cut(s)	289, 367, 384, 385
NcoI	CCATGG	1 cut(s)	1293
NdeII	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
NlaIV	GGNNCC	3 cut(s)	1447, 1574, 1988
NmeAIII	GCCGAG	2 cut(s)	656, 1516
NmuCI	GTSAC	1 cut(s)	1679
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	2 cut(s)	9, 1341
PciI	ACATGT	2 cut(s)	5, 1337
PciSI	GCTCTTC	1 cut(s)	1791
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PctI	GAATGC	2 cut(s)	826, 1129
PdmI	GAANNNNTTC	3 cut(s)	875, 1085, 1965
PfeI	GAWTC	2 cut(s)	299, 1289
PflFI	GACNNNGTC	1 cut(s)	1577
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	8 cut(s)	45, 963, 990, 1489, 1525, 1558, 1812, 1815
Ple19I	CGATCG	1 cut(s)	1598
PleI	GAGTC	2 cut(s)	220, 668
PmaCI	CACGTG	1 cut(s)	1864
PmlI	CACGTG	1 cut(s)	1864
PpsI	GAGTC	2 cut(s)	220, 668
Ppu21I	YACGTR	2 cut(s)	473, 1864
PpuMI	RGGWCCY	1 cut(s)	1573
PscI	ACATGT	2 cut(s)	5, 1337
Psp1406I	AACGTT	1 cut(s)	1223
Psp5II	RGGWCCY	1 cut(s)	1573
Psp6I	CCWGG	1 cut(s)	1627
PspCI	CACGTG	1 cut(s)	1864
PspGI	CCWGG	1 cut(s)	1627
PspN4I	GGNNCC	3 cut(s)	1447, 1574, 1988
PspPI	GGNCC	1 cut(s)	1573
PspPPI	RGGWCCY	1 cut(s)	1573
PstNI	CAGNNNCTG	2 cut(s)	1031, 1813
PsuI	RGATCY	2 cut(s)	1267, 1765
PsyI	GACNNNGTC	1 cut(s)	1577
PvuI	CGATCG	1 cut(s)	1598
PvuII	CAGCTG	3 cut(s)	988, 1526, 1813
RsaI	GTAC	1 cut(s)	981
RsaNI	GTAC	1 cut(s)	980
RseI	CAYNNNNRTG	1 cut(s)	1094
SapI	GCTCTTC	1 cut(s)	1791
SaqAI	TTAA	4 cut(s)	522, 708, 1163, 1238
SatI	GCNGC	8 cut(s)	44, 962, 989, 1488, 1524, 1557, 1811, 1814
Sau3AI	GATC	9 cut(s)	226, 267, 1267, 1504, 1510, 1595, 1673, 1732, 1765
Sau96I	GGNCC	1 cut(s)	1573
SchI	GAGTC	2 cut(s)	221, 668
ScrFI	CCNGG	5 cut(s)	289, 367, 384, 385, 1629
SduI	GDGCHC	4 cut(s)	31, 934, 1332, 1690
SfaNI	GCATC	8 cut(s)	504, 542, 597, 783, 1063, 1446, 1712, 1866
SfcI	CTRYAG	2 cut(s)	1383, 1633
SinI	GGWCC	1 cut(s)	1573
SmaI	CCCGGG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	1094
SmlI	CTYRAG	1 cut(s)	1900
SmoI	CTYRAG	1 cut(s)	1900
SnaBI	TACGTA	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	344
SsiI	CCGC	4 cut(s)	44, 403, 680, 833
SspMI	CTAG	3 cut(s)	345, 1373, 1838
StyD4I	CCNGG	5 cut(s)	287, 365, 382, 383, 1627
StyI	CCWWGG	1 cut(s)	1293
TaaI	ACNGT	7 cut(s)	331, 411, 623, 851, 1305, 1722, 1829
TaiI	ACGT	3 cut(s)	475, 1226, 1866
TaqI	TCGA	3 cut(s)	257, 356, 1598
TatI	WGTACW	1 cut(s)	979
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	299, 1289
Tru1I	TTAA	4 cut(s)	522, 708, 1163, 1238
Tru9I	TTAA	4 cut(s)	522, 708, 1163, 1238
TscAI	CASTG	4 cut(s)	45, 250, 628, 1834
TseFI	GTSAC	1 cut(s)	1679
TseI	GCWGC	7 cut(s)	961, 988, 1487, 1523, 1556, 1810, 1813
Tsp45I	GTSAC	1 cut(s)	1679
TspDTI	ATGAA	5 cut(s)	764, 1078, 1616, 1728, 1757
TspMI	CCCGGG	1 cut(s)	383
TspRI	CASTG	4 cut(s)	45, 250, 628, 1834
Tth111I	GACNNNGTC	1 cut(s)	1577
VpaK11BI	GGWCC	1 cut(s)	1573
XapI	RAATTY	6 cut(s)	352, 378, 420, 805, 1063, 1772
XceI	RCATGY	2 cut(s)	9, 1341
XmaI	CCCGGG	1 cut(s)	383
XmiI	GTMKAC	2 cut(s)	215, 1347
XmnI	GAANNNNTTC	3 cut(s)	875, 1085, 1965
XspI	CTAG	3 cut(s)	345, 1373, 1838
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.