Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015809

Physical Location & Seq

Genomic Coordinates Forward (+)

20542371 .. 20544394

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGAGATGTCTTAGAAGAGCACAGCCCTCACTGCTGCTCAAAACTTTCCCCAATGCCAAAAACCAAAGCTCTTCCCTCTCCACCATCACAATCCAAAACCCACAACCCAATCAAAACAACCACCCCATTCCTCCACACAAAACCCACTTGGTTTCCACCAGTAACTCTACACACTTTGATCCCCACCAATTTCGCAATGTCATTGCGTCGAACAAGTTGATCACCAGCTACATTCGTTCCGGGGATTTAGATTCTGCACTTAAGGTGTTTGAGAAAATGACTGTTAGAACCACAACTAGTTGGAATTCGATTTTAGCCGGGTATGCGAAAATTCCCGGGAAAGTGAAAGAAGCCCGCCAACTGTTTGATAAAATTCCTCAACCAGACACTTGCTCATATAATAGTATGCTGGCTTGTTATTTACGTAATCTTGGTGTTGGCTCTGCTATGGAGTTCTTTGATTTGATGCCTGTTAAGGACATTGCATCTTGGAATACCATGATATCGGGTTTTGCTCAGAATGGGGAGATGAGGGAAGCACAGAAGTTGTTTTTGTTGATGCCTGAGAAGAACAGTGTCTCGTGGAGTGCGTTGGTTTCGGGGTATGTGAAATGTGGGGATTTGGACTCGGCGGTGAAGTGGTTTGAGGTTGCACCGGTTAAGAGTGTTGTGGCGTGGACGGCTATGGTTACTGGGTATATGAAGTTTGGGAAGATTGGTGTAGCAGAGAAGTTGTTTAGAGAGATGCCTGAGAAAAATTTAGTAACATGGAATGCTATGGTTGCGGGGTATGTGGAAAACTGTCAAGCTGAAGAGGGTTTGAAGCTTTTCAGGTCAATGATTGGATATGGGGTTAGGCCAAATGCATCGAGTTTGAGTAGTGCTCTACTGGGTTGTAGCAACCTGTCTGCGCTGCAAATGGGTAGGCAAGTACATCAGCTGCTCTATAAGTTTGAATTATATAATGATACAACTTCAGGAACTGCATTGGTTAGTATGTATTGTAAGTGTGGGAATTTGGAGGATGCGTGGAAGTTTTTCATTGAGATGACACGAAAAGATGTTGTTACTTGGAATGCAATGATTGCTGGTTATGCTCAACATGGGGAAGGTTTAAAAGCTCTCAGTTTGTTTGACCAGATGAGGAATGAAGGAGTAAAACCAGATTGGATAACGTTTGTTTCTGTGTTAATGGCTTGCAATCATGCAGGACTTGTAGATCTTGGGGTTCAATATTTTGATTCCATGGCAAGACAGTATCAAGTTGAAGCTAAGCCAGAGCACTATACATGCATGGTAGACCTTCTTGGTCGTGCTGGTAAGCTAGTTGAAGCTGTAGCTTTGATACAGAAAATGCCATTTGAACCACATTCTGCCATTTTTGGAACTCTATTAGGTGCCTGTCGGATGCACAAGAACTTAGAATTAGCTGAGTTTGCTGCCGAGAAATTGCTTGATCTTGATCCAACGAGTGCAGCTGGTTATGTTCAACTTGCTAATGTTTGTGCTGCAACAAATAGATGGGACCTTGTTGGCAAAGTCAGACGATCGATGAAAGAAAATAGGGTCGTGAAGACACCTGGCTATAGTTGGATTGAGATAAAGAGTGTAGTCCATGAGTTCAGATCAGGTGACAGGGCTCACCCAGAATTGGCATCTATACATGAAAAACTGTCTGAACTGGATCAGAAAATGAAGTTGGCAGGCTATGTTCCAGATCTTGAATTTGCATTACATGATGTTGGGGAAGAGCAGAAACAGCAGCTGCTATTATGGCACAGTGAAAAACTAGCAATTGCTTTTGGGCTTATACACGTGCCTTTAGGGATGCCAATTCGCATTTTCAAAAACTTGAGAGTATGTGGGGATTGCCATCATGCAGTCAAGTATATATCAGCAATTGAGAAAAGAGAAATCATTCTCAGAGATACTACAAGGTTCCATCATTTCAAAAATGGGGTTTGTTCTTGTGGTGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

661

Amino Acids

74.19

Weight (kDa)

8.74

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	159 - 191	3.8e-06	PPR repeat family
PPR	PF01535	163 - 191	6e-08	PPR repeat
PPR_2	PF13041	222 - 253	9.4e-06	PPR repeat family
PPR	PF01535	224 - 253	8.3e-06	PPR repeat
PPR_2	PF13041	253 - 300	7.8e-08	PPR repeat family
PPR_2	PF13041	353 - 400	6.2e-14	PPR repeat family
PPR_3	PF13812	353 - 400	3.6e-06	Pentatricopeptide repeat domain
PPR	PF01535	356 - 386	2.7e-09	PPR repeat
E_motif	PF20431	471 - 533	1.9e-15	E motif
DYW_deaminase	PF14432	569 - 661	1e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16835
fragaria_vesca	FvH4_5g20040
malus_domestica	MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica	Prupe.5G060100_v2.0.a1
pyrus_communis	pycom06g04210
rosa_chinensis	RchiOBHm_Chr7g0204911
rosa_laevigata	RLG00000003422
rosa_multiflora	Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252680
rosa_rugosa	Rorug07G0086500
rosa_samantha	Rh7BG214100
rosa_wichuraiana	Rw7G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1397
AccI	GTMKAC	1 cut(s)	1299
AciI	CCGC	3 cut(s)	355, 632, 785
AclI	AACGTT	1 cut(s)	1175
AclWI	GGATC	3 cut(s)	173, 1457, 1692
AcsI	RAATTY	6 cut(s)	304, 330, 372, 757, 1015, 1724
AcuI	CTGAAG	2 cut(s)	831, 960
AcvI	CACGTG	1 cut(s)	1816
AfaI	GTAC	1 cut(s)	933
AfiI	CCNNNNNNNGG	1 cut(s)	1651
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	1813
AgeI	ACCGGT	1 cut(s)	655
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	1579
AjuI	GAANNNNNNNTTGG	2 cut(s)	1682, 1714
Alw21I	GWGCWC	3 cut(s)	22, 886, 1284
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	3 cut(s)	173, 1457, 1692
AlwNI	CAGNNNCTG	2 cut(s)	983, 1765
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	857
ApeKI	GCWGC	8 cut(s)	34, 913, 940, 1439, 1475, 1508, 1762, 1765
ApoI	RAATTY	6 cut(s)	304, 330, 372, 757, 1015, 1724
AsiGI	ACCGGT	1 cut(s)	655
Asp700I	GAANNNNTTC	3 cut(s)	827, 1037, 1917
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	1525
AsuC2I	CCSGG	4 cut(s)	241, 319, 336, 337
AsuHPI	GGTGA	5 cut(s)	214, 646, 1634, 1643, 1985
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	1525
BanI	GGYRCC	1 cut(s)	1397
BanII	GRGCYC	1 cut(s)	1642
BauI	CACGAG	1 cut(s)	580
BbrPI	CACGTG	1 cut(s)	1816
BbsI	GAAGAC	1 cut(s)	1580
Bbv12I	GWGCWC	3 cut(s)	22, 886, 1284
BbvI	GCAGC	8 cut(s)	21, 900, 927, 1426, 1487, 1495, 1752, 1774
BccI	CCATC	4 cut(s)	92, 1515, 1881, 1950
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	1581
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	4 cut(s)	241, 319, 336, 337
BcoDI	GTCTC	1 cut(s)	583
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	3 cut(s)	297, 1325, 1790
BfmI	CTRYAG	2 cut(s)	1335, 1585
BfrI	CTTAAG	1 cut(s)	260
BglII	AGATCT	2 cut(s)	1219, 1717
BisI	GCNGC	8 cut(s)	35, 914, 941, 1440, 1476, 1509, 1763, 1766
BlpI	GCTNAGC	1 cut(s)	1272
BlsI	GCNGC	8 cut(s)	36, 915, 942, 1441, 1477, 1510, 1764, 1767
Bme1390I	CCNGG	5 cut(s)	241, 319, 336, 337, 1581
Bme18I	GGWCC	1 cut(s)	1525
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	1525
BmiI	GGNNCC	3 cut(s)	1399, 1526, 1940
BmrFI	CCNGG	5 cut(s)	241, 319, 336, 337, 1581
BmrI	ACTGGG	2 cut(s)	702, 899
BmsI	GCATC	9 cut(s)	456, 494, 549, 735, 875, 1015, 1398, 1664, 1818
BmuI	ACTGGG	2 cut(s)	702, 899
BpiI	GAAGAC	1 cut(s)	1580
BplI	GAGNNNNNCTC	2 cut(s)	868, 900
Bpu1102I	GCTNAGC	1 cut(s)	1272
BpuEI	CTTGAG	1 cut(s)	1873
BpuMI	CCSGG	4 cut(s)	241, 319, 336, 337
Bsa29I	ATCGAT	1 cut(s)	1550
BsaAI	YACGTR	2 cut(s)	425, 1816
BsaBI	GATNNNNATC	2 cut(s)	1461, 1872
BsaJI	CCNNGG	3 cut(s)	240, 335, 1245
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bsc4I	CCNNNNNNNGG	1 cut(s)	1651
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	5 cut(s)	159, 697, 894, 1686, 1985
Bse3DI	GCAATG	4 cut(s)	201, 202, 480, 1086
Bse8I	GATNNNNATC	2 cut(s)	1461, 1872
BseBI	CCWGG	1 cut(s)	1581
BseCI	ATCGAT	1 cut(s)	1550
BseDI	CCNNGG	3 cut(s)	240, 335, 1245
BseGI	GGATG	3 cut(s)	1030, 1413, 1833
BseJI	GATNNNNATC	2 cut(s)	1461, 1872
BseLI	CCNNNNNNNGG	1 cut(s)	1651
BseMI	GCAATG	4 cut(s)	201, 202, 480, 1086
BseMII	CTCAG	6 cut(s)	530, 555, 741, 1138, 1422, 1936
BseNI	ACTGG	5 cut(s)	159, 697, 894, 1686, 1985
BseXI	GCAGC	8 cut(s)	21, 900, 927, 1426, 1487, 1495, 1752, 1774
BsgI	GTGCAG	2 cut(s)	240, 1494
Bsh1285I	CGRYCG	1 cut(s)	1550
BshFI	GGCC	1 cut(s)	859
BshNI	GGYRCC	1 cut(s)	1397
BshTI	ACCGGT	1 cut(s)	655
BshVI	ATCGAT	1 cut(s)	1550
BsiEI	CGRYCG	1 cut(s)	1550
BsiHKAI	GWGCWC	3 cut(s)	22, 886, 1284
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	240, 318, 336, 656
BslFI	GGGAC	1 cut(s)	1538
BslI	CCNNNNNNNGG	1 cut(s)	1651
BsmAI	GTCTC	1 cut(s)	583
BsmFI	GGGAC	1 cut(s)	1538
BsmI	GAATGC	2 cut(s)	778, 1081
BsnI	GGCC	1 cut(s)	859
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	4 cut(s)	22, 886, 1284, 1642
Bsp143I	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
Bsp1720I	GCTNAGC	1 cut(s)	1272
Bsp19I	CCATGG	1 cut(s)	1245
BspACI	CCGC	3 cut(s)	355, 632, 785
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	6 cut(s)	529, 556, 742, 1137, 1423, 1935
BspDI	ATCGAT	1 cut(s)	1550
BspLI	GGNNCC	3 cut(s)	1399, 1526, 1940
BspPI	GGATC	3 cut(s)	173, 1457, 1692
BspQI	GCTCTTC	3 cut(s)	10, 76, 1743
BspT107I	GGYRCC	1 cut(s)	1397
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	4 cut(s)	201, 202, 480, 1086
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	5 cut(s)	159, 697, 894, 1686, 1985
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	240, 335, 1245
BssMI	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	1245
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	1581
Bst4CI	ACNGT	7 cut(s)	283, 363, 575, 803, 1257, 1674, 1781
Bst6I	CTCTTC	4 cut(s)	10, 76, 807, 1743
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstBAI	YACGTR	2 cut(s)	425, 1816
BstC8I	GCNNGC	4 cut(s)	355, 411, 1198, 1705
BstDEI	CTNAG	9 cut(s)	11, 516, 564, 750, 1124, 1272, 1420, 1431, 1922
BstDSI	CCRYGG	1 cut(s)	1245
BstF5I	GGATG	3 cut(s)	1030, 1413, 1833
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	9 cut(s)	181, 222, 1222, 1459, 1465, 1550, 1628, 1687, 1720
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
BstMCI	CGRYCG	1 cut(s)	1550
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 323, 680, 782, 1085, 1094, 1436, 1759, 1774
BstNI	CCWGG	1 cut(s)	1581
BstNSI	RCATGY	1 cut(s)	1293
BstSCI	CCNGG	5 cut(s)	239, 317, 334, 335, 1579
BstSFI	CTRYAG	2 cut(s)	1335, 1585
BstSNI	TACGTA	1 cut(s)	425
BstV1I	GCAGC	8 cut(s)	21, 900, 927, 1426, 1487, 1495, 1752, 1774
BstV2I	GAAGAC	1 cut(s)	1580
BstX2I	RGATCY	2 cut(s)	1219, 1717
BstYI	RGATCY	2 cut(s)	1219, 1717
Bsu15I	ATCGAT	1 cut(s)	1550
BsuRI	GGCC	1 cut(s)	859
BsuTUI	ATCGAT	1 cut(s)	1550
BtgI	CCRYGG	1 cut(s)	1245
BtsCI	GGATG	3 cut(s)	1030, 1413, 1833
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	29, 580, 1786
Cac8I	GCNNGC	4 cut(s)	355, 411, 1198, 1705
CaiI	CAGNNNCTG	2 cut(s)	983, 1765
CfoI	GCGC	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	1525
Cfr9I	CCCGGG	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	1550
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	932
CspAI	ACCGGT	1 cut(s)	655
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	9 cut(s)	11, 516, 564, 750, 1124, 1272, 1420, 1431, 1922
DpnI	GATC	9 cut(s)	180, 221, 1221, 1458, 1464, 1549, 1627, 1686, 1719
DpnII	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
DraI	TTTAAA	1 cut(s)	1116
Eam1104I	CTCTTC	4 cut(s)	10, 76, 807, 1743
EarI	CTCTTC	4 cut(s)	10, 76, 807, 1743
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	1245
Eco24I	GRGCYC	1 cut(s)	1642
Eco32I	GATATC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	1525
Eco57I	CTGAAG	2 cut(s)	831, 960
Eco72I	CACGTG	1 cut(s)	1816
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	1525
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	1579
EcoRV	GATATC	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	1245
EcoT22I	ATGCAT	2 cut(s)	868, 1295
EcoT38I	GRGCYC	1 cut(s)	1642
ErhI	CCWWGG	1 cut(s)	1245
FaqI	GGGAC	1 cut(s)	1538
FauI	CCCGC	2 cut(s)	362, 778
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	1299
Fnu4HI	GCNGC	8 cut(s)	35, 914, 941, 1440, 1476, 1509, 1763, 1766
FokI	GGATG	3 cut(s)	1037, 1420, 1840
FriOI	GRGCYC	1 cut(s)	1642
Fsp4HI	GCNGC	8 cut(s)	35, 914, 941, 1440, 1476, 1509, 1763, 1766
FspBI	CTAG	3 cut(s)	297, 1325, 1790
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	8 cut(s)	35, 914, 941, 1440, 1476, 1509, 1763, 1766
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	4 cut(s)	240, 318, 336, 656
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	913
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	3 cut(s)	251, 626, 1241
HpaII	CCGG	4 cut(s)	240, 318, 336, 656
HphI	GGTGA	5 cut(s)	214, 646, 1634, 1643, 1985
Hpy166II	GTNNAC	2 cut(s)	678, 1300
Hpy188I	TCNGA	7 cut(s)	519, 1407, 1544, 1625, 1678, 1689, 1925
Hpy188III	TCNNGA	5 cut(s)	978, 1460, 1570, 1715, 1721
Hpy8I	GTNNAC	2 cut(s)	678, 1300
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	1103, 1145, 1313
HpyCH4III	ACNGT	7 cut(s)	283, 363, 575, 803, 1257, 1674, 1781
HpyCH4IV	ACGT	3 cut(s)	424, 1175, 1815
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 323, 680, 782, 1085, 1094, 1436, 1759, 1774
HpyF3I	CTNAG	9 cut(s)	11, 516, 564, 750, 1124, 1272, 1420, 1431, 1922
HpySE526I	ACGT	3 cut(s)	424, 1175, 1815
HspAI	GCGC	1 cut(s)	911
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
LguI	GCTCTTC	3 cut(s)	10, 76, 1743
Lsp1109I	GCAGC	8 cut(s)	21, 900, 927, 1426, 1487, 1495, 1752, 1774
LweI	GCATC	9 cut(s)	456, 494, 549, 735, 875, 1015, 1398, 1664, 1818
MaeI	CTAG	3 cut(s)	297, 1325, 1790
MaeII	ACGT	3 cut(s)	424, 1175, 1815
MaeIII	GTNAC	5 cut(s)	161, 688, 763, 1066, 1631
MalI	GATC	9 cut(s)	180, 221, 1221, 1458, 1464, 1549, 1627, 1686, 1719
MboI	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
MboII	GAAGA	7 cut(s)	27, 63, 580, 724, 824, 1585, 1760
MfeI	CAATTG	2 cut(s)	1794, 1899
MflI	RGATCY	2 cut(s)	1219, 1717
MhlI	GDGCHC	4 cut(s)	22, 886, 1284, 1642
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	4 cut(s)	281, 1385, 1490, 1571
MnlI	CCTC	9 cut(s)	37, 86, 141, 387, 525, 640, 808, 1015, 1137
Mph1103I	ATGCAT	2 cut(s)	868, 1295
MroXI	GAANNNNTTC	3 cut(s)	827, 1037, 1917
MseI	TTAA	5 cut(s)	261, 474, 660, 1115, 1190
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	3 cut(s)	940, 1478, 1765
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	4 cut(s)	240, 318, 336, 656
MspR9I	CCNGG	5 cut(s)	241, 319, 336, 337, 1581
MunI	CAATTG	2 cut(s)	1794, 1899
Mva1269I	GAATGC	2 cut(s)	778, 1081
MvaI	CCWGG	1 cut(s)	1581
MwoI	GCNNNNNNNGC	9 cut(s)	31, 323, 680, 782, 1085, 1094, 1436, 1759, 1774
NciI	CCSGG	4 cut(s)	241, 319, 336, 337
NcoI	CCATGG	1 cut(s)	1245
NdeII	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
NlaIV	GGNNCC	3 cut(s)	1399, 1526, 1940
NmeAIII	GCCGAG	2 cut(s)	608, 1468
NmuCI	GTSAC	1 cut(s)	1631
NsiI	ATGCAT	2 cut(s)	868, 1295
NspI	RCATGY	1 cut(s)	1293
PciSI	GCTCTTC	3 cut(s)	10, 76, 1743
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PctI	GAATGC	2 cut(s)	778, 1081
PdmI	GAANNNNTTC	3 cut(s)	827, 1037, 1917
PfeI	GAWTC	2 cut(s)	251, 1241
PinAI	ACCGGT	1 cut(s)	655
PkrI	GCNGC	8 cut(s)	36, 915, 942, 1441, 1477, 1510, 1764, 1767
Ple19I	CGATCG	1 cut(s)	1550
PleI	GAGTC	1 cut(s)	620
PmaCI	CACGTG	1 cut(s)	1816
PmlI	CACGTG	1 cut(s)	1816
PpsI	GAGTC	1 cut(s)	620
Ppu21I	YACGTR	2 cut(s)	425, 1816
PpuMI	RGGWCCY	1 cut(s)	1525
Psp1406I	AACGTT	1 cut(s)	1175
Psp5II	RGGWCCY	1 cut(s)	1525
Psp6I	CCWGG	1 cut(s)	1579
PspCI	CACGTG	1 cut(s)	1816
PspGI	CCWGG	1 cut(s)	1579
PspN4I	GGNNCC	3 cut(s)	1399, 1526, 1940
PspPI	GGNCC	1 cut(s)	1525
PspPPI	RGGWCCY	1 cut(s)	1525
PstNI	CAGNNNCTG	2 cut(s)	983, 1765
PsuI	RGATCY	2 cut(s)	1219, 1717
PvuI	CGATCG	1 cut(s)	1550
PvuII	CAGCTG	3 cut(s)	940, 1478, 1765
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
RseI	CAYNNNNRTG	1 cut(s)	1046
SapI	GCTCTTC	3 cut(s)	10, 76, 1743
SaqAI	TTAA	5 cut(s)	261, 474, 660, 1115, 1190
SatI	GCNGC	8 cut(s)	35, 914, 941, 1440, 1476, 1509, 1763, 1766
Sau3AI	GATC	9 cut(s)	178, 219, 1219, 1456, 1462, 1547, 1625, 1684, 1717
Sau96I	GGNCC	1 cut(s)	1525
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	5 cut(s)	241, 319, 336, 337, 1581
SduI	GDGCHC	4 cut(s)	22, 886, 1284, 1642
SfaNI	GCATC	9 cut(s)	456, 494, 549, 735, 875, 1015, 1398, 1664, 1818
SfcI	CTRYAG	2 cut(s)	1335, 1585
SinI	GGWCC	1 cut(s)	1525
SmaI	CCCGGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	2 cut(s)	260, 1852
SmoI	CTYRAG	2 cut(s)	260, 1852
SnaBI	TACGTA	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	355, 632, 785
SspI	AATATT	1 cut(s)	1235
SspMI	CTAG	3 cut(s)	297, 1325, 1790
StyD4I	CCNGG	5 cut(s)	239, 317, 334, 335, 1579
StyI	CCWWGG	1 cut(s)	1245
TaaI	ACNGT	7 cut(s)	283, 363, 575, 803, 1257, 1674, 1781
TaiI	ACGT	3 cut(s)	427, 1178, 1818
TaqI	TCGA	4 cut(s)	209, 308, 869, 1550
TatI	WGTACW	1 cut(s)	931
TfiI	GAWTC	2 cut(s)	251, 1241
Tru1I	TTAA	5 cut(s)	261, 474, 660, 1115, 1190
Tru9I	TTAA	5 cut(s)	261, 474, 660, 1115, 1190
TscAI	CASTG	3 cut(s)	36, 580, 1786
TseFI	GTSAC	1 cut(s)	1631
TseI	GCWGC	8 cut(s)	34, 913, 940, 1439, 1475, 1508, 1762, 1765
Tsp45I	GTSAC	1 cut(s)	1631
TspDTI	ATGAA	6 cut(s)	716, 1030, 1164, 1568, 1680, 1709
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	3 cut(s)	36, 580, 1786
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	1525
XapI	RAATTY	6 cut(s)	304, 330, 372, 757, 1015, 1724
XceI	RCATGY	1 cut(s)	1293
XmaI	CCCGGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	1299
XmnI	GAANNNNTTC	3 cut(s)	827, 1037, 1917
XspI	CTAG	3 cut(s)	297, 1325, 1790
Zsp2I	ATGCAT	2 cut(s)	868, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.