Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234171.1

Orthogroup ID

OG0015809

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 663

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 662 bp

atggttactgggtatatgaagtttgggaagattggtgtagcagagaagttgtttagagagatgcctgagaaaaatttagtaacatggaatgctatggttgcggggtatgtggaaaactgtcaagctgaagagggtttgaagcttttcaggtcaatgattggatatggggttaggccaaatgcatcgagtttgagtagtgctctactgggttgtagcaacctgtctgcgctgcaaatgggtaggcaagtacatcagctgctctataagtttgaattatataatgatacaacttcaggaactgcattggttagtatgtattgtaagtgtgggaatttggaggatgcgtggaagtttttcattgagatgacacgaaaagatgttgttacttggaatgcaatgattgctggttatgctcaacatggggaaggtttaaaagctctcagtttgtttgaccagatgaggaatgaaggagtaaaaccagattggataacgtttgtttctgtgttaatggcttgcaatcatgcaggacttgtagatcttggggttcaatattttgattccatggcaagacagtatcaagttgaagctaagccagagcactatacatgcatggtagaccttcttggtcgtgctggtaagctagttgaagctgtagctttgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

220

Amino Acids

24.54

Weight (kDa)

6.43

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16835
fragaria_vesca	FvH4_5g20040
malus_domestica	MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica	Prupe.5G060100_v2.0.a1
pyrus_communis	pycom06g04210
rosa_chinensis	RchiOBHm_Chr7g0204911
rosa_laevigata	RLG00000003422
rosa_multiflora	Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252680
rosa_rugosa	Rorug07G0086500
rosa_samantha	Rh7BG214100
rosa_wichuraiana	Rw7G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	615
AciI	CCGC	1 cut(s)	101
AclI	AACGTT	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	73, 331
AcuI	CTGAAG	2 cut(s)	147, 276
AfaI	GTAC	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	139, 272, 548, 584, 647
AluBI	AGCT	8 cut(s)	125, 142, 256, 437, 587, 640, 650, 656
AluI	AGCT	8 cut(s)	125, 142, 256, 437, 587, 640, 650, 656
Alw21I	GWGCWC	2 cut(s)	202, 600
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	229, 256
ApoI	RAATTY	2 cut(s)	73, 331
Asp700I	GAANNNNTTC	2 cut(s)	143, 353
AspLEI	GCGC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	202, 600
BbvI	GCAGC	2 cut(s)	216, 243
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	651
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	230, 257
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	2 cut(s)	231, 258
BmrI	ACTGGG	2 cut(s)	18, 215
BmsI	GCATC	3 cut(s)	51, 191, 331
BmuI	ACTGGG	2 cut(s)	18, 215
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bpu1102I	GCTNAGC	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	2 cut(s)	13, 210
Bse3DI	GCAATG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	57, 454
BseNI	ACTGG	2 cut(s)	13, 210
BseXI	GCAGC	2 cut(s)	216, 243
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	202, 600
BsmI	GAATGC	2 cut(s)	94, 397
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	202, 600
Bsp143I	GATC	1 cut(s)	535
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	58, 453
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	13, 210
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	119, 573
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	3 cut(s)	66, 440, 588
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 401, 410
BstNSI	RCATGY	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	216, 243
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	6 cut(s)	84, 419, 521, 562, 606, 610
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	66, 440, 588
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	147, 276
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	2 cut(s)	184, 611
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	6 cut(s)	87, 422, 524, 565, 609, 613
FatI	CATG	6 cut(s)	83, 418, 520, 561, 605, 609
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	230, 257
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	230, 257
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	230, 257
HaeIII	GGCC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	6 cut(s)	87, 422, 524, 565, 609, 613
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	1 cut(s)	616
HpyAV	CCTTC	3 cut(s)	419, 461, 629
HpyCH4III	ACNGT	2 cut(s)	119, 573
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	7 cut(s)	182, 232, 302, 395, 516, 524, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 401, 410
HpyF3I	CTNAG	3 cut(s)	66, 440, 588
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	6 cut(s)	87, 422, 524, 565, 609, 613
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	216, 243
LweI	GCATC	3 cut(s)	51, 191, 331
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	3 cut(s)	4, 79, 382
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	2 cut(s)	40, 140
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	202, 600
MluCI	AATT	3 cut(s)	73, 272, 331
MnlI	CCTC	3 cut(s)	124, 331, 453
Mph1103I	ATGCAT	2 cut(s)	184, 611
MroXI	GAANNNNTTC	2 cut(s)	143, 353
MseI	TTAA	2 cut(s)	431, 506
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	256
Mva1269I	GAATGC	2 cut(s)	94, 397
MwoI	GCNNNNNNNGC	3 cut(s)	98, 401, 410
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	6 cut(s)	87, 422, 524, 565, 609, 613
NsiI	ATGCAT	2 cut(s)	184, 611
NspI	RCATGY	1 cut(s)	609
PctI	GAATGC	2 cut(s)	94, 397
PdmI	GAANNNNTTC	2 cut(s)	143, 353
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	231, 258
Psp1406I	AACGTT	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	431, 506
SatI	GCNGC	2 cut(s)	230, 257
Sau3AI	GATC	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	202, 600
SfaNI	GCATC	3 cut(s)	51, 191, 331
SfcI	CTRYAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	73, 272, 331
SsiI	CCGC	1 cut(s)	101
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	641
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	119, 573
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	73, 272, 331
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	431, 506
Tru9I	TTAA	2 cut(s)	431, 506
TseI	GCWGC	2 cut(s)	229, 256
TspDTI	ATGAA	3 cut(s)	32, 346, 480
XapI	RAATTY	2 cut(s)	73, 331
XceI	RCATGY	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	2 cut(s)	143, 353
XspI	CTAG	1 cut(s)	641
Zsp2I	ATGCAT	2 cut(s)	184, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.