Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8139782.1

Orthogroup ID

OG0015809

Physical Location & Seq

Genomic Coordinates Reverse (-)

49 .. 627

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8139782.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcacaagaacttagaattagctgagtttgctgccgagaaattgcttgatcttgatccaacgagtgcagctggttatgttcaacttgctaatgtttatgctgcaacaaatagatgggaccttgttggcaaagtcaggcgattgatgaaagaaaatagggtcgtgaagacacctggctatagttggattgagataaagagtgtagtccatgagttcagatcaggtgacagggctcacccagaattggcatctatacatgaaaaactgtctgaactggatcagaaaatgaagttggcaggctatgttccagatcttgaattcgcattacatgatgttggggaagagcagaaacagcagctgctattatggcacagtgaaaaactagcaattgcttttgggcttatacacgtgcctttagggatgccaattcgcattttcaaaaacttgagagtatgtggggattgccatcacgcagtcaagtatatatcagcaattgagaaaagagaaatcattctcagagatactacaaggttccatcatttcaaaaatggggtttgttcttgtggtgattactggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

192

Amino Acids

22.03

Weight (kDa)

7.76

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16835
fragaria_vesca	FvH4_5g20040
malus_domestica	MD04G1050300.v1.1 MD06G1049600.v1.1
prunus_persica	Prupe.5G060100_v2.0.a1
pyrus_communis	pycom06g04210
rosa_chinensis	RchiOBHm_Chr7g0204911
rosa_laevigata	RLG00000003422
rosa_multiflora	Rmu_co8139782.1_g000001 Rmu_co8234171.1_g000001 Rmu_sc0002180.1_g000004
rosa_roxburghii	Rroxscaffold_3G00252680
rosa_rugosa	Rorug07G0086500
rosa_samantha	Rh7BG214100
rosa_wichuraiana	Rw7G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	50, 285
AcsI	RAATTY	1 cut(s)	317
AcvI	CACGTG	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	83, 317, 439, 544
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	23, 71, 358
AluI	AGCT	3 cut(s)	23, 71, 358
AlwI	GGATC	2 cut(s)	50, 285
AlwNI	CAGNNNCTG	1 cut(s)	358
ApeKI	GCWGC	5 cut(s)	32, 68, 101, 355, 358
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	227, 236, 578
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	5 cut(s)	19, 80, 88, 345, 367
BccI	CCATC	3 cut(s)	108, 474, 543
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	5 cut(s)	33, 69, 102, 356, 359
BlsI	GCNGC	5 cut(s)	34, 70, 103, 357, 360
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	119, 533
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	257, 411
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	409
BsaBI	GATNNNNATC	2 cut(s)	54, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	279, 578
Bse8I	GATNNNNATC	2 cut(s)	54, 465
BseBI	CCWGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	426
BseJI	GATNNNNATC	2 cut(s)	54, 465
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	15, 529
BseNI	ACTGG	2 cut(s)	279, 578
BseXI	GCAGC	5 cut(s)	19, 80, 88, 345, 367
BsgI	GTGCAG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	5 cut(s)	49, 55, 218, 277, 310
BspCNI	CTCAG	2 cut(s)	16, 528
BspLI	GGNNCC	2 cut(s)	119, 533
BspPI	GGATC	2 cut(s)	50, 285
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	279, 578
BssMI	GATC	5 cut(s)	49, 55, 218, 277, 310
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	267, 374
Bst6I	CTCTTC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	13, 24, 515
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	5 cut(s)	52, 58, 221, 280, 313
BstMBI	GATC	5 cut(s)	49, 55, 218, 277, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 352, 367
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	5 cut(s)	19, 80, 88, 345, 367
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	3 cut(s)	209, 257, 329
CviJI	RGCY	7 cut(s)	23, 71, 177, 233, 300, 358, 400
CviKI_1	RGCY	7 cut(s)	23, 71, 177, 233, 300, 358, 400
DdeI	CTNAG	3 cut(s)	13, 24, 515
DpnI	GATC	5 cut(s)	51, 57, 220, 279, 312
DpnII	GATC	5 cut(s)	49, 55, 218, 277, 310
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	3 cut(s)	212, 260, 332
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	208, 256, 328
Fnu4HI	GCNGC	5 cut(s)	33, 69, 102, 356, 359
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	5 cut(s)	33, 69, 102, 356, 359
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	5 cut(s)	33, 69, 102, 356, 359
Hin1II	CATG	3 cut(s)	212, 260, 332
HphI	GGTGA	3 cut(s)	227, 236, 578
Hpy188I	TCNGA	4 cut(s)	218, 271, 282, 518
Hpy188III	TCNNGA	4 cut(s)	53, 163, 308, 314
HpyCH4III	ACNGT	2 cut(s)	267, 374
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	4, 68, 104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 352, 367
HpyF3I	CTNAG	3 cut(s)	13, 24, 515
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	212, 260, 332
Kzo9I	GATC	5 cut(s)	49, 55, 218, 277, 310
LguI	GCTCTTC	1 cut(s)	336
Lsp1109I	GCAGC	5 cut(s)	19, 80, 88, 345, 367
LweI	GCATC	2 cut(s)	257, 411
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	5 cut(s)	51, 57, 220, 279, 312
MboI	GATC	5 cut(s)	49, 55, 218, 277, 310
MboII	GAAGA	2 cut(s)	178, 353
MfeI	CAATTG	2 cut(s)	387, 492
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	7 cut(s)	17, 41, 242, 317, 387, 426, 492
MmeI	TCCRAC	2 cut(s)	83, 164
MroXI	GAANNNNTTC	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	71, 358
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	2 cut(s)	387, 492
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	29, 352, 367
NdeII	GATC	5 cut(s)	49, 55, 218, 277, 310
NlaIII	CATG	3 cut(s)	212, 260, 332
NlaIV	GGNNCC	2 cut(s)	119, 533
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	510
PkrI	GCNGC	5 cut(s)	34, 70, 103, 357, 360
PmaCI	CACGTG	1 cut(s)	409
PmlI	CACGTG	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	119, 533
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	71, 358
SapI	GCTCTTC	1 cut(s)	336
SatI	GCNGC	5 cut(s)	33, 69, 102, 356, 359
Sau3AI	GATC	5 cut(s)	49, 55, 218, 277, 310
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	8 cut(s)	25, 73, 123, 175, 226, 360, 411, 533
SfaNI	GCATC	2 cut(s)	257, 411
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	7 cut(s)	17, 41, 242, 317, 387, 426, 492
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	267, 374
TaiI	ACGT	1 cut(s)	411
TasI	AATT	7 cut(s)	17, 41, 242, 317, 387, 426, 492
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	5 cut(s)	32, 68, 101, 355, 358
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	161, 273, 302
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.