Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006046

Physical Location & Seq

Genomic Coordinates Reverse (-)

21645191 .. 21657621

Gene Structure 12431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1129900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGCGGTTCGAGCCGTCGGAAGCTCCACAGTCTTCCGCTCCGCCTCCTCTTCCGCTTCCTCCCCCACTCTCCTTTCCTTCCGCTGCTGCCCTTGCCGTTTCACTACTCTCCAATTCCGCCGATTCTCCAAATTAGGCATTCGTTTCCCTATATTTCGGTCCGGTAAGCTAGCTCCCGGCCATGGCGGCGTTCAAAGCACCTCCGTTCACAGCCTCGTCAATAGCGTCATGGAAGAGCTCGGCGCCCTGCGCAGACGGAGGCTAGTTCGCGCTGCCGCCAAGGTGGAGCTGACAAGTAGTGGAGGGATTGTAGAAGATAAACTTGTGAGCTGGACACTGCAGCAAGGTCTGCTACTGGAGTTCAAGAAGGATGCAGAGAGAGTGTTGCTGGCCATTGCGCAGAAACCCGATGGCAAGAAGAACTGGATGGTGTCCGATCAGAATGGTGTTACATCGTCAATTAAACCACAACAAATTACCTATATTGTTCCCGGTGTTGAGAACTTTGACCACACAGAGATATCAGACTTTATTCAGAAAGCTCAAGATAACTTGGATCCAGCACTACTTGAATTCGCTTGGGTTGAGCTCCTTGAAAAGAATAAGCGGGTGACGGCAGAAGAATTAGCCGAGATGATATTTGGTACCGTGGAACCTCTTGAATGCTACTGTGCTCATTTGTTGCTTTCAGAAGATGAAGTATACTTCACTGTGCTGGAGACAAAAGGTTCTCGCTCTATATATGGTCCTCGACCTGCTTCGCAGGTTGAGGAACTTCTGTGTAGGAAGCTCGCAAAGGAGGCTGCTGAGAAAGAACTGCAGGAGTTTAAACAATTACTGAAATCTGCCAAGGCAATGCCTTTAGATGCTAAACCTCTCAAATCTTCTTGGTTGGTAGAAGAGAAAACCAGACACAAAATTGAGTCTCTTGAAGCTTATGCTATTGATGCTTGCACAATTGATGACCAAAGGAAAACAGCTGGAACAATCCTAAGAACAATGGGGATGGTCAAAACAGCCTCATCAGCTTTGAATCTCCTCATAGACATTGGCTATTTTCCTGTACATGTGAATCTTGAGCTGTTGAAATTGAACATCCGTACTGATCATTCAGATGAAGTTATATCATCTGCAGAGCGTCTTTTGTCAGGTTCCTCTGATTCAGATGAGATTGAAAGGCGAGATCTCACTCACTTGAAGGTCTATGCTATTGATGTGGATGAGGCTGATGAGCTCGATGATGCCCTGAGTGCAATGAGGCTACAAGATGGACGCATTAAAATATGGATTCATGTTGCAGATGCAACTAGGTTTCTTCAACCTGGGAGCATAGTAGACAGGGAGGCAATGAGAAGAGGAACTTCTGTATTCTTGCCCACTGCTACTTATCCTATGTTCCCAGAGAAACTTGCCATGGAGGGAATGAGTTTGCAACAAGGAGAGATTTGCAATGCAGTTACTGTATCTGTGGTGCTGCACTCCGATGGAAGTATTGCAGAATATTCAGTGGACAACTCAATTATTAAACCAACATACATGTTGACATATGAGAGTGCATCTGAGCTTCTTCATTTGAACCTGCAAGAAGAGGCTGAACTGAAAATCCTGTCTGAGGCTGCAACTCTCCGGTCAATATGGCGTCGAGAACAGGGTGCAATTGACACAGCCACATTGGAAGCACGCATCAAAGTGGTTAATCCAGAGGATCCGCAGCCTGTGATTAATTTGTACGTAGAAAACCAGGCAGACCCTGCAATGCGACTTGTCACTGAGATGATGGTGCTCTGCGGAGAAGTTATAGCCACATTTGGTTCTAGAAATAACATTCCTTTACCCTACAGAGGACAACCCCAATCCAACATCGACACCTCTGTATTTGCACGTCTTCCAGAAGGACCTGTTAGAAGCTCTGCTCTTGTTAAACTAATGCGTGCTGCTGAAATTGATTTCAGAAAACCTATACGCCATGGAATTTTAGGACTTCCGGGTTATGTTCAGTTTACATCTCCTATCCGTAGATATATGGATCTACTAGCTCACTATCAGGTGAAAGCATTTCTTGCAGGGGAATCTCTTCCTTTCTCAGCTGGTCAGTTAGAAGGGATGGCATCTGTTGTGAACATGAATGTAAGAGTAGCAAGGAGGCTCTTCAGCAGCAGTCTTCGGTACTGGATATTAGAATATCTGAGAAGGCAGCCAAAAGAAAAAAAGTATCGTGCGCTGATTCTTAGATTCATTAAGGATCGGATTGCGGCCATATTGTTAGTTGAGGTGGGACTTCAATCTTCCGTGTGGGTGTCCGTGGGAGCTCAAATTGGAGATGAAGTTCTTGTTCGGGTAGAAGAAGCTCATCCACGCGATGATGTGCTTTTACTGAAAGAGGTTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

798

Amino Acids

89.09

Weight (kDa)

6.25

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD_RNase_II	PF23163	113 - 174	1.5e-26	CSD-like barrel domain
WHD_RNase_II	PF25255	176 - 255	2.6e-31	Ribonuclease II, winged helix domain
HTH_RNase_II	PF23161	256 - 359	4.4e-25	Double HTH domain
RNB	PF00773	393 - 688	3.4e-75	RNB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02250
fragaria_vesca	FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600
malus_domestica	MD04G1129900.v1.1 MD12G1143000.v1.1
prunus_persica	Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1
pyrus_communis	pycom04g11820
rosa_chinensis	RchiOBHm_Chr3g0466451
rosa_laevigata	RLG00000024573
rosa_multiflora	Rmu_sc0036233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002460 Rroxscaffold_6G00414460
rosa_rugosa	Rorug03G0082000
rosa_samantha	Rh3AG128500 Rh3BG149900 Rh3DG150600
rosa_wichuraiana	Rw3G012140 Rw3G012150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	251, 399
Acc36I	ACCTGC	3 cut(s)	754, 763, 1587
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	242, 644
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	2 cut(s)	702, 1335
AccII	CGCG	2 cut(s)	270, 2358
AclWI	GGATC	6 cut(s)	551, 564, 1700, 1713, 2034, 2250
AcoI	YGGCCR	3 cut(s)	178, 390, 2253
AcsI	RAATTY	2 cut(s)	572, 1971
AcuI	CTGAAG	1 cut(s)	2134
AcyI	GRCGYC	2 cut(s)	243, 1639
AfaI	GTAC	5 cut(s)	646, 1065, 1102, 1730, 2168
AfiI	CCNNNNNNNGG	3 cut(s)	182, 1612, 1841
AflIII	ACRYGT	2 cut(s)	1066, 1536
AjiI	CACGTC	1 cut(s)	1883
AjnI	CCWGG	2 cut(s)	1321, 1740
AloI	GAACNNNNNNTCC	4 cut(s)	1587, 1619, 2310, 2342
Alw21I	GWGCWC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
Alw26I	GTCTC	2 cut(s)	713, 930
AlwI	GGATC	6 cut(s)	551, 564, 1700, 1713, 2034, 2250
AlwNI	CAGNNNCTG	2 cut(s)	1460, 1751
AoxI	GGCC	3 cut(s)	178, 390, 2253
ApoI	RAATTY	2 cut(s)	572, 1971
AseI	ATTAAT	1 cut(s)	1722
Asp700I	GAANNNNTTC	1 cut(s)	2073
Asp718I	GGTACC	1 cut(s)	644
AspLEI	GCGC	5 cut(s)	245, 252, 272, 400, 2221
AspS9I	GGNCC	3 cut(s)	159, 746, 1895
AsuC2I	CCSGG	3 cut(s)	177, 492, 1986
AsuHPI	GGTGA	2 cut(s)	622, 2059
AsuNHI	GCTAGC	1 cut(s)	169
AvaII	GGWCC	3 cut(s)	159, 746, 1895
BalI	TGGCCA	1 cut(s)	392
BamHI	GGATCC	2 cut(s)	556, 1705
BanI	GGYRCC	2 cut(s)	242, 644
BanII	GRGCYC	4 cut(s)	240, 591, 1236, 2311
BbsI	GAAGAC	3 cut(s)	25, 1877, 2153
Bbv12I	GWGCWC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
BccI	CCATC	7 cut(s)	404, 421, 1000, 1262, 1478, 1771, 2098
BceAI	ACGGC	2 cut(s)	81, 630
BciT130I	CCWGG	2 cut(s)	1323, 1742
BclI	TGATCA	1 cut(s)	1105
BcnI	CCSGG	3 cut(s)	177, 492, 1986
BcoDI	GTCTC	2 cut(s)	713, 930
BfaI	CTAG	5 cut(s)	170, 263, 1308, 1815, 2033
BfmI	CTRYAG	4 cut(s)	338, 818, 1131, 1837
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	3 cut(s)	754, 763, 1587
BglI	GCCNNNNNGGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	1183
Bme1390I	CCNGG	5 cut(s)	177, 492, 1323, 1742, 1986
Bme18I	GGWCC	3 cut(s)	159, 746, 1895
BmgBI	CACGTC	1 cut(s)	1883
BmgT120I	GGNCC	3 cut(s)	159, 746, 1895
BmiI	GGNNCC	6 cut(s)	244, 558, 646, 654, 1153, 1707
BmrFI	CCNGG	5 cut(s)	177, 492, 1323, 1742, 1986
BmsI	GCATC	8 cut(s)	361, 856, 937, 1231, 1291, 1565, 1692, 2117
BmtI	GCTAGC	1 cut(s)	173
BpiI	GAAGAC	3 cut(s)	25, 1877, 2153
BpmI	CTGGAG	2 cut(s)	377, 737
BpuEI	CTTGAG	2 cut(s)	528, 1097
BpuMI	CCSGG	3 cut(s)	177, 492, 1986
BsaAI	YACGTR	1 cut(s)	1732
BsaHI	GRCGYC	2 cut(s)	243, 1639
BsaJI	CCNNGG	8 cut(s)	181, 279, 648, 849, 1322, 1413, 1966, 2301
BsaWI	WCCGGW	2 cut(s)	161, 1626
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 2310, 2340
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 1612, 1841
Bse1I	ACTGG	3 cut(s)	360, 428, 2174
Bse3DI	GCAATG	6 cut(s)	393, 861, 1260, 1353, 1456, 1761
BseBI	CCWGG	2 cut(s)	1323, 1742
BseDI	CCNNGG	8 cut(s)	181, 279, 648, 849, 1322, 1413, 1966, 2301
BseGI	GGATG	7 cut(s)	376, 432, 1011, 1095, 1225, 2109, 2350
BseLI	CCNNNNNNNGG	3 cut(s)	182, 1612, 1841
BseMI	GCAATG	6 cut(s)	393, 861, 1260, 1353, 1456, 1761
BseMII	CTCAG	7 cut(s)	798, 1238, 1551, 1602, 1761, 2097, 2177
BseNI	ACTGG	3 cut(s)	360, 428, 2174
BseRI	GAGGAG	2 cut(s)	37, 1028
BsgI	GTGCAG	1 cut(s)	1460
Bsh1236I	CGCG	2 cut(s)	270, 2358
BshFI	GGCC	3 cut(s)	180, 392, 2255
BshNI	GGYRCC	2 cut(s)	242, 644
BsiHKAI	GWGCWC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
BsiSI	CCGG	5 cut(s)	162, 177, 492, 1627, 1985
BslFI	GGGAC	1 cut(s)	2289
BslI	CCNNNNNNNGG	3 cut(s)	182, 1612, 1841
BsmAI	GTCTC	2 cut(s)	713, 930
BsmFI	GGGAC	1 cut(s)	2289
BsmI	GAATGC	2 cut(s)	138, 668
BsnI	GGCC	3 cut(s)	180, 392, 2255
Bsp1286I	GDGCHC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
Bsp1407I	TGTACA	1 cut(s)	1063
Bsp143I	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
Bsp19I	CCATGG	3 cut(s)	181, 1413, 1966
BspANI	GGCC	3 cut(s)	180, 392, 2255
BspCNI	CTCAG	7 cut(s)	799, 1239, 1552, 1603, 1762, 2096, 2178
BspFNI	CGCG	2 cut(s)	270, 2358
BspLI	GGNNCC	6 cut(s)	244, 558, 646, 654, 1153, 1707
BspMAI	CTGCAG	3 cut(s)	342, 822, 1135
BspMI	ACCTGC	3 cut(s)	754, 763, 1587
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	6 cut(s)	551, 564, 1700, 1713, 2034, 2250
BspQI	GCTCTTC	2 cut(s)	228, 2153
BspT107I	GGYRCC	2 cut(s)	242, 644
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	6 cut(s)	393, 861, 1260, 1353, 1456, 1761
BsrGI	TGTACA	1 cut(s)	1063
BsrI	ACTGG	3 cut(s)	360, 428, 2174
BssECI	CCNNGG	8 cut(s)	181, 279, 648, 849, 1322, 1413, 1966, 2301
BssMI	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	2 cut(s)	243, 1639
BssT1I	CCWWGG	5 cut(s)	181, 279, 849, 1413, 1966
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	1323, 1742
Bst4CI	ACNGT	5 cut(s)	31, 649, 671, 712, 1462
Bst6I	CTCTTC	7 cut(s)	55, 228, 894, 1348, 1581, 2079, 2153
BstACI	GRCGYC	2 cut(s)	243, 1639
BstAPI	GCANNNNNTGC	3 cut(s)	349, 1751, 2060
BstAUI	TGTACA	1 cut(s)	1063
BstBAI	YACGTR	1 cut(s)	1732
BstC8I	GCNNGC	6 cut(s)	171, 390, 792, 952, 1681, 1932
BstDEI	CTNAG	9 cut(s)	807, 992, 1247, 1560, 1611, 1770, 2083, 2186, 2228
BstDSI	CCRYGG	5 cut(s)	181, 648, 1413, 1966, 2301
BstENI	CCTNNNNNAGG	1 cut(s)	1610
BstF5I	GGATG	7 cut(s)	376, 432, 1011, 1095, 1225, 2109, 2350
BstFNI	CGCG	2 cut(s)	270, 2358
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	5 cut(s)	245, 252, 272, 400, 2221
BstKTI	GATC	7 cut(s)	439, 559, 1108, 1186, 1708, 2029, 2245
BstMAI	GTCTC	2 cut(s)	713, 930
BstMBI	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
BstNI	CCWGG	2 cut(s)	1323, 1742
BstNSI	RCATGY	2 cut(s)	1070, 1540
BstSCI	CCNGG	5 cut(s)	175, 490, 1321, 1740, 1984
BstSFI	CTRYAG	4 cut(s)	338, 818, 1131, 1837
BstSNI	TACGTA	1 cut(s)	1732
BstUI	CGCG	2 cut(s)	270, 2358
BstV2I	GAAGAC	3 cut(s)	25, 1877, 2153
BstX2I	RGATCY	4 cut(s)	556, 1183, 1705, 2026
BstYI	RGATCY	4 cut(s)	556, 1183, 1705, 2026
BstZ17I	GTATAC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	180, 392, 2255
BtgI	CCRYGG	5 cut(s)	181, 648, 1413, 1966, 2301
BtgZI	GCGATG	1 cut(s)	2373
BtrI	CACGTC	1 cut(s)	1883
BtsCI	GGATG	7 cut(s)	376, 432, 1011, 1095, 1225, 2109, 2350
BtsI	GCAGTG	2 cut(s)	335, 1377
BtsIMutI	CAGTG	5 cut(s)	335, 708, 1377, 1512, 1767
BveI	ACCTGC	3 cut(s)	754, 763, 1587
Cac8I	GCNNGC	6 cut(s)	171, 390, 792, 952, 1681, 1932
CaiI	CAGNNNCTG	2 cut(s)	1460, 1751
CfoI	GCGC	5 cut(s)	245, 252, 272, 400, 2221
Cfr13I	GGNCC	3 cut(s)	159, 746, 1895
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	4 cut(s)	214, 1127, 1281, 1628
Csp6I	GTAC	5 cut(s)	645, 1064, 1101, 1729, 2167
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	8 cut(s)	182, 229, 1067, 1292, 1414, 1537, 1967, 2122
CviQI	GTAC	5 cut(s)	645, 1064, 1101, 1729, 2167
DdeI	CTNAG	9 cut(s)	807, 992, 1247, 1560, 1611, 1770, 2083, 2186, 2228
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	7 cut(s)	438, 558, 1107, 1185, 1707, 2028, 2244
DpnII	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	3 cut(s)	178, 390, 2253
Eam1104I	CTCTTC	7 cut(s)	55, 228, 894, 1348, 1581, 2079, 2153
EarI	CTCTTC	7 cut(s)	55, 228, 894, 1348, 1581, 2079, 2153
EciI	GGCGGA	2 cut(s)	31, 107
Ecl136II	GAGCTC	4 cut(s)	238, 589, 1234, 2309
Eco105I	TACGTA	1 cut(s)	1732
Eco130I	CCWWGG	5 cut(s)	181, 279, 849, 1413, 1966
Eco24I	GRGCYC	4 cut(s)	240, 591, 1236, 2311
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	159, 746, 1895
Eco53kI	GAGCTC	4 cut(s)	238, 589, 1234, 2309
Eco57I	CTGAAG	1 cut(s)	2134
EcoICRI	GAGCTC	4 cut(s)	238, 589, 1234, 2309
EcoNI	CCTNNNNNAGG	1 cut(s)	1610
EcoO109I	RGGNCCY	1 cut(s)	1895
EcoRI	GAATTC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	1321, 1740
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	5 cut(s)	181, 279, 849, 1413, 1966
EcoT38I	GRGCYC	4 cut(s)	240, 591, 1236, 2311
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	5 cut(s)	181, 279, 849, 1413, 1966
FaeI	CATG	8 cut(s)	185, 232, 1070, 1295, 1417, 1540, 1970, 2125
FalI	AAGNNNNNCTT	6 cut(s)	306, 338, 1345, 1377, 2043, 2075
FaqI	GGGAC	1 cut(s)	2289
FatI	CATG	8 cut(s)	181, 228, 1066, 1291, 1413, 1536, 1966, 2121
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	1 cut(s)	1546
FbaI	TGATCA	1 cut(s)	1105
FblI	GTMKAC	2 cut(s)	702, 1335
FokI	GGATG	7 cut(s)	383, 439, 1018, 1082, 1232, 2116, 2337
FriOI	GRGCYC	4 cut(s)	240, 591, 1236, 2311
FspBI	CTAG	5 cut(s)	170, 263, 1308, 1815, 2033
FspI	TGCGCA	2 cut(s)	251, 399
GlaI	GCGC	5 cut(s)	244, 251, 271, 399, 2220
GsuI	CTGGAG	2 cut(s)	377, 737
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	180, 392, 2255
HapII	CCGG	5 cut(s)	162, 177, 492, 1627, 1985
HgaI	GACGC	4 cut(s)	214, 1127, 1281, 1628
HhaI	GCGC	5 cut(s)	245, 252, 272, 400, 2221
Hin1I	GRCGYC	2 cut(s)	243, 1639
Hin1II	CATG	8 cut(s)	185, 232, 1070, 1295, 1417, 1540, 1970, 2125
Hin6I	GCGC	5 cut(s)	243, 250, 270, 398, 2219
HinP1I	GCGC	5 cut(s)	243, 250, 270, 398, 2219
HincII	GTYRAC	1 cut(s)	1542
HindII	GTYRAC	1 cut(s)	1542
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	9 cut(s)	123, 923, 1033, 1072, 1160, 1288, 2069, 2224, 2232
HpaII	CCGG	5 cut(s)	162, 177, 492, 1627, 1985
HphI	GGTGA	2 cut(s)	622, 2059
Hpy166II	GTNNAC	7 cut(s)	208, 703, 1336, 1510, 1542, 2001, 2119
Hpy188III	TCNNGA	9 cut(s)	364, 545, 659, 929, 1076, 1643, 1700, 1815, 1889
Hpy8I	GTNNAC	7 cut(s)	208, 703, 1336, 1510, 1542, 2001, 2119
Hpy99I	CGWCG	2 cut(s)	20, 1644
HpyAV	CCTTC	6 cut(s)	88, 361, 1192, 1886, 2093, 2184
HpyCH4III	ACNGT	5 cut(s)	31, 649, 671, 712, 1462
HpyCH4IV	ACGT	2 cut(s)	1731, 1882
HpyF3I	CTNAG	9 cut(s)	807, 992, 1247, 1560, 1611, 1770, 2083, 2186, 2228
HpySE526I	ACGT	2 cut(s)	1731, 1882
Hsp92I	GRCGYC	2 cut(s)	243, 1639
Hsp92II	CATG	8 cut(s)	185, 232, 1070, 1295, 1417, 1540, 1970, 2125
HspAI	GCGC	5 cut(s)	243, 250, 270, 398, 2219
KasI	GGCGCC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
LguI	GCTCTTC	2 cut(s)	228, 2153
LmnI	GCTCC	7 cut(s)	29, 44, 178, 286, 594, 1326, 2306
LweI	GCATC	8 cut(s)	361, 856, 937, 1231, 1291, 1565, 1692, 2117
MaeI	CTAG	5 cut(s)	170, 263, 1308, 1815, 2033
MaeII	ACGT	2 cut(s)	1731, 1882
MaeIII	GTNAC	4 cut(s)	448, 610, 1456, 1765
MalI	GATC	7 cut(s)	438, 558, 1107, 1185, 1707, 2028, 2244
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
MfeI	CAATTG	2 cut(s)	957, 1656
MflI	RGATCY	4 cut(s)	556, 1183, 1705, 2026
MhlI	GDGCHC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
MlsI	TGGCCA	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	392
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	1881
Mox20I	TGGCCA	1 cut(s)	392
MroXI	GAANNNNTTC	1 cut(s)	2073
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	8 cut(s)	462, 828, 1278, 1524, 1695, 1722, 1920, 2238
MslI	CAYNNNNRTG	4 cut(s)	1113, 1482, 1688, 1772
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	3 cut(s)	84, 980, 2087
MspI	CCGG	5 cut(s)	162, 177, 492, 1627, 1985
MspR9I	CCNGG	5 cut(s)	177, 492, 1323, 1742, 1986
MssI	GTTTAAAC	1 cut(s)	829
MunI	CAATTG	2 cut(s)	957, 1656
Mva1269I	GAATGC	2 cut(s)	138, 668
MvaI	CCWGG	2 cut(s)	1323, 1742
MvnI	CGCG	2 cut(s)	270, 2358
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	177, 492, 1986
NcoI	CCATGG	3 cut(s)	181, 1413, 1966
NdeI	CATATG	1 cut(s)	1546
NdeII	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	8 cut(s)	185, 232, 1070, 1295, 1417, 1540, 1970, 2125
NlaIV	GGNNCC	6 cut(s)	244, 558, 646, 654, 1153, 1707
NmeAIII	GCCGAG	2 cut(s)	219, 655
NmuCI	GTSAC	2 cut(s)	610, 1765
NsbI	TGCGCA	2 cut(s)	251, 399
NspI	RCATGY	2 cut(s)	1070, 1540
PciI	ACATGT	2 cut(s)	1066, 1536
PciSI	GCTCTTC	2 cut(s)	228, 2153
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	138, 668
PdmI	GAANNNNTTC	1 cut(s)	2073
PfeI	GAWTC	8 cut(s)	123, 1033, 1072, 1160, 1288, 2069, 2224, 2232
PleI	GAGTC	1 cut(s)	931
PluTI	GGCGCC	1 cut(s)	246
PmeI	GTTTAAAC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	931
Ppu21I	YACGTR	1 cut(s)	1732
PpuMI	RGGWCCY	1 cut(s)	1895
PscI	ACATGT	2 cut(s)	1066, 1536
PshBI	ATTAAT	1 cut(s)	1722
Psp124BI	GAGCTC	4 cut(s)	240, 591, 1236, 2311
Psp5II	RGGWCCY	1 cut(s)	1895
Psp6I	CCWGG	2 cut(s)	1321, 1740
PspGI	CCWGG	2 cut(s)	1321, 1740
PspN4I	GGNNCC	6 cut(s)	244, 558, 646, 654, 1153, 1707
PspPI	GGNCC	3 cut(s)	159, 746, 1895
PspPPI	RGGWCCY	1 cut(s)	1895
PstI	CTGCAG	3 cut(s)	342, 822, 1135
PstNI	CAGNNNCTG	2 cut(s)	1460, 1751
PsuI	RGATCY	4 cut(s)	556, 1183, 1705, 2026
PvuII	CAGCTG	2 cut(s)	980, 2087
RsaI	GTAC	5 cut(s)	646, 1065, 1102, 1730, 2168
RsaNI	GTAC	5 cut(s)	645, 1064, 1101, 1729, 2167
RseI	CAYNNNNRTG	4 cut(s)	1113, 1482, 1688, 1772
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SacI	GAGCTC	4 cut(s)	240, 591, 1236, 2311
SapI	GCTCTTC	2 cut(s)	228, 2153
SaqAI	TTAA	8 cut(s)	462, 828, 1278, 1524, 1695, 1722, 1920, 2238
Sau3AI	GATC	7 cut(s)	436, 556, 1105, 1183, 1705, 2026, 2242
Sau96I	GGNCC	3 cut(s)	159, 746, 1895
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	5 cut(s)	177, 492, 1323, 1742, 1986
SduI	GDGCHC	6 cut(s)	240, 591, 676, 1236, 1785, 2311
SfaNI	GCATC	8 cut(s)	361, 856, 937, 1231, 1291, 1565, 1692, 2117
SfcI	CTRYAG	4 cut(s)	338, 818, 1131, 1837
SfoI	GGCGCC	1 cut(s)	244
SinI	GGWCC	3 cut(s)	159, 746, 1895
SmiMI	CAYNNNNRTG	4 cut(s)	1113, 1482, 1688, 1772
SmlI	CTYRAG	2 cut(s)	543, 1076
SmoI	CTYRAG	2 cut(s)	543, 1076
SnaBI	TACGTA	1 cut(s)	1732
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	1502
SspMI	CTAG	5 cut(s)	170, 263, 1308, 1815, 2033
SstI	GAGCTC	4 cut(s)	240, 591, 1236, 2311
StyD4I	CCNGG	5 cut(s)	175, 490, 1321, 1740, 1984
StyI	CCWWGG	5 cut(s)	181, 279, 849, 1413, 1966
TaaI	ACNGT	5 cut(s)	31, 649, 671, 712, 1462
TaiI	ACGT	2 cut(s)	1734, 1885
TaqI	TCGA	5 cut(s)	10, 751, 1236, 1642, 1863
TaqII	GACCGA	1 cut(s)	147
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	3 cut(s)	189, 278, 2255
TfiI	GAWTC	8 cut(s)	123, 1033, 1072, 1160, 1288, 2069, 2224, 2232
Tru1I	TTAA	8 cut(s)	462, 828, 1278, 1524, 1695, 1722, 1920, 2238
Tru9I	TTAA	8 cut(s)	462, 828, 1278, 1524, 1695, 1722, 1920, 2238
TscAI	CASTG	5 cut(s)	342, 715, 1384, 1512, 1774
TseFI	GTSAC	2 cut(s)	610, 1765
Tsp45I	GTSAC	2 cut(s)	610, 1765
TspDTI	ATGAA	7 cut(s)	711, 1131, 1280, 1559, 2138, 2224, 2337
TspGWI	ACGGA	6 cut(s)	193, 271, 1088, 2003, 2278, 2290
TspRI	CASTG	5 cut(s)	342, 715, 1384, 1512, 1774
VpaK11BI	GGWCC	3 cut(s)	159, 746, 1895
VspI	ATTAAT	1 cut(s)	1722
XagI	CCTNNNNNAGG	1 cut(s)	1610
XapI	RAATTY	2 cut(s)	572, 1971
XbaI	TCTAGA	1 cut(s)	1814
XceI	RCATGY	2 cut(s)	1070, 1540
XmiI	GTMKAC	2 cut(s)	702, 1335
XmnI	GAANNNNTTC	1 cut(s)	2073
XspI	CTAG	5 cut(s)	170, 263, 1308, 1815, 2033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.