Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006046

Physical Location & Seq

Genomic Coordinates Forward (+)

12929612 .. 12936341

Gene Structure 6730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGGCGGTGCGAGCCGTCAGCACCTGCTCAATCTTCCGCTCCGCCTCTTCCCCTACTCTCTTCGCCTTCCGCTGCTGCCCGTGCCACTTCCACTTCCAATTCCGCCGCTTCTCCAAATTAGGCATCCGCTTCCCACCGTTTTGGTCCGAGAAGCTGAGTCCCGGTCATGGCGGCGCTCAGAGCAGCTCCGTCCACAGCCTCGTCGATAGCGTCATGGAAGAGCTCCAATACTTGCGCACAAAAAGAGTTCGCGCCTCCGCCAAGGTGGAACTCACAAGCAGTGGAGAGATACTGGAGGATAAGCTTGTGAACCGAACACTGCAAAAAGGGGTGCTGCTTGAGTTCAAGAAGGATGCGGAACGAGTATTGCTGGCTGTTGCTCAGAAACCCGATGGCAAGAAGAACTGGATGGTGTCCGATCAGAATGGTGTTACATCATCCATCAAACCACAACAAATTACATATATTGTTCCCGGTGTTGAAAATTTTGACCATGCAGAGATTTCAGACTTTATTCAGAAAGCTCAGGAAAACTTGGATCCGGCACTGCTAGAATTCGCTTGGGTTGAACTCCTTGAAAAGAATAAGCGGGTGAAGGTAGAAGAACTAGCAGAGATGATATATGGTAGTGTGGAGTCCCTAGAATGCTACTGCGCTCATCTTTTGCTTTCAGGAGACGAAATATACTTCACTGTCCTAGAGATGAAAGGTTCTCGCTCTATATATGGACCTCGACCTGCTGAGCAGGTTGAGGAACTTCTACGTAGGAAGCTTGCAAAGGAGGCTGCTGAGAAAGAGCAGCAGGAGTTTGTAACCCTGCTGAAATCTGCGAAGGCTATGCCTTTAGATGCCAAACCTCCTAAATCTTCTTGGATGGTTGAAGAGAAAATCAAACACAGAATTGAGTCTCTTGAATGTTATGCTATTGATGACTGCAAAACCGATGACCAAAGGAAAACAGCCGGAACAATCTTAAAGGCAATGGGGATGGTGAAAACAGCATCATCAGCTCTGAATCTCCTCATAGATATTGGGTATTTCCCTGTACATGTGAATCTGGACTTGTTGAAGTTCAATATTCATACGGATCATTCAGATGAAGTTATATCAGCTGCAGAGAGTCTTCTGTTAGATCCATCAGATCCAGATGAGATTGAAAGGAAAGATCTCACTCACCTGAAGGTCTATGCTATTGATGTGGATGAGGCTGATGAGCTTGATGATGCCTTGAGTGGAACAAGGCTGCAAGATGGACGCATTAAAATATGGATTCATGTTGCAGACCCGACTAGGCTTGTTCAACCTGGGAGCATACTAGACAGGGAGGCTATGAGAAGAGGAACTTCCGTCTTCTTGCCCACTGCTACTTATCCCATGTTCCCAGAAAAACTTGCCATGCAGGGAATGAGTTTGCAGCAAGGAGAGATTTGCAGTGCTGTTACAGTATCTGTTGTGCTGCACTCTGATGGCAGTATTGCAGAATATTCAGTGGACAACTCCATCATCAGACCAACATATATGCTAACGTATGAGAGTGCTTCTGAGCTTCTTCATTTGAACCTGGAAGAAGAGTCTGAACTAAAAATGTTGTCTGAGGCCGCAACTCTCCGGAAAAAATGGCGTCGTGAACAGGGTGGCATTGACACAGCCACATTGGAAGCACGCATAAAAGTTGTGAATCCAGAGGATCCGGAGCCTGTAATAAATCTCTATGTTGAGGACCAGGCTGAACCTGCAATGCGACTGGTCTCTGAGATGATGATACTCTGTGGAGAAGTTATAGCTACTTTTGGTTGTAGCAATAACATTCCTTTACCATACAGGGGACAGCCCCAATCCAACATCGACACATCTGTATTTGCCCATCTTCCAGAAGGACCTGTTAGAAGCTCTGCCCTTGTCAAAATAATGCGTGCTGCTGAAATTGATTTCAGGAAACCTATACGCCATGGAATTTTAGGACTTCCTGGTTATGTTCAGTTTACATCTCCTATCCGCAGATATCTGGATCTACTAGCTCACTATCAGATCAAAGCATTTCTTATTGGAGATTCTCCTCCTTTCTCAGCTGGTCAGTTGGAAGGGATAGCGTCTATAGTGAACATGAATACTAGAGTAGCAAAGCGGCTCTTTAACAGCAGTCTGCGGTATTGGATATTAGAATATTTGAGAAGGCAGCCAAAAGAAAAAAGATTTCGTGCATTGATTCTTAGATTCATTAAGGATCGCATTGCAGCCATACTGTTAGTTGAGGTGGGACTTCAAGCATCTGTGTGGGTGTCTGTGGGATCACAAATTGGAGATGAAGTTCTAGTTCGCGTAGAAGAAGCTCATCCACGTGATGATGTGCTTTTTCTCAAAGAGGTGGTCATTGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

793

Amino Acids

89.27

Weight (kDa)

5.82

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD_RNase_II	PF23163	107 - 168	6.8e-28	CSD-like barrel domain
WHD_RNase_II	PF25255	170 - 249	9.3e-30	Ribonuclease II, winged helix domain
HTH_RNase_II	PF23161	250 - 353	1e-27	Double HTH domain
RNB	PF00773	387 - 681	6.7e-77	RNB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02250
fragaria_vesca	FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600
malus_domestica	MD04G1129900.v1.1 MD12G1143000.v1.1
prunus_persica	Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1
pyrus_communis	pycom04g11820
rosa_chinensis	RchiOBHm_Chr3g0466451
rosa_laevigata	RLG00000024573
rosa_multiflora	Rmu_sc0036233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002460 Rroxscaffold_6G00414460
rosa_rugosa	Rorug03G0082000
rosa_samantha	Rh3AG128500 Rh3BG149900 Rh3DG150600
rosa_wichuraiana	Rw3G012140 Rw3G012150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc16I	TGCGCA	1 cut(s)	236
Acc36I	ACCTGC	4 cut(s)	32, 736, 745, 1741
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	2 cut(s)	252, 2319
AccIII	TCCGGA	2 cut(s)	1608, 1690
AcsI	RAATTY	3 cut(s)	484, 554, 1953
AcuI	CTGAAG	1 cut(s)	1199
AcvI	CACGTG	1 cut(s)	2339
AcyI	GRCGYC	1 cut(s)	1621
AfaI	GTAC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	2 cut(s)	167, 1823
AflIII	ACRYGT	1 cut(s)	1048
AjnI	CCWGG	4 cut(s)	1303, 1560, 1722, 1966
AloI	GAACNNNNNNTCC	2 cut(s)	2292, 2324
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	669, 912, 1753
AlwNI	CAGNNNCTG	2 cut(s)	24, 1448
Aor13HI	TCCGGA	2 cut(s)	1608, 1690
AoxI	GGCC	1 cut(s)	1596
ApoI	RAATTY	3 cut(s)	484, 554, 1953
ArsI	GACNNNNNNTTYG	1 cut(s)	2352
AspLEI	GCGC	4 cut(s)	176, 237, 254, 656
AspS9I	GGNCC	4 cut(s)	144, 728, 1720, 1877
AsuC2I	CCSGG	2 cut(s)	162, 474
AsuHPI	GGTGA	3 cut(s)	604, 1003, 1166
AvaII	GGWCC	4 cut(s)	144, 728, 1720, 1877
BamHI	GGATCC	2 cut(s)	538, 1687
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	2339
BbsI	GAAGAC	2 cut(s)	1115, 1342
Bbv12I	GWGCWC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BciT130I	CCWGG	4 cut(s)	1305, 1562, 1724, 1968
BcnI	CCSGG	2 cut(s)	162, 474
BcoDI	GTCTC	3 cut(s)	669, 912, 1753
BfaI	CTAG	9 cut(s)	551, 608, 641, 698, 1290, 1316, 2015, 2112, 2312
BfmI	CTRYAG	2 cut(s)	1113, 2094
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	4 cut(s)	32, 736, 745, 1741
BglII	AGATCT	1 cut(s)	1165
BlpI	GCTNAGC	1 cut(s)	741
Bme1390I	CCNGG	6 cut(s)	162, 474, 1305, 1562, 1724, 1968
Bme18I	GGWCC	4 cut(s)	144, 728, 1720, 1877
BmgT120I	GGNCC	4 cut(s)	144, 728, 1720, 1877
BmiI	GGNNCC	3 cut(s)	540, 1689, 1695
BmrFI	CCNGG	6 cut(s)	162, 474, 1305, 1562, 1724, 1968
BmsI	GCATC	6 cut(s)	132, 343, 838, 1010, 1213, 2276
BpiI	GAAGAC	2 cut(s)	1115, 1342
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	359, 1249
BpuMI	CCSGG	2 cut(s)	162, 474
BsaAI	YACGTR	2 cut(s)	764, 2339
BsaHI	GRCGYC	1 cut(s)	1621
BsaI	GGTCTC	1 cut(s)	1753
BsaJI	CCNNGG	3 cut(s)	261, 1304, 1948
BsaWI	WCCGGW	2 cut(s)	1608, 1690
BsaXI	ACNNNNNCTCC	2 cut(s)	2292, 2322
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 1823
Bse1I	ACTGG	3 cut(s)	297, 410, 1749
Bse3DI	GCAATG	3 cut(s)	987, 1743, 2229
BseAI	TCCGGA	2 cut(s)	1608, 1690
BseBI	CCWGG	4 cut(s)	1305, 1562, 1724, 1968
BseDI	CCNNGG	3 cut(s)	261, 1304, 1948
BseGI	GGATG	8 cut(s)	123, 358, 414, 437, 879, 993, 1207, 2332
BseLI	CCNNNNNNNGG	2 cut(s)	167, 1823
BseMI	GCAATG	3 cut(s)	987, 1743, 2229
BseNI	ACTGG	3 cut(s)	297, 410, 1749
BseRI	GAGGAG	2 cut(s)	1010, 2046
BsgI	GTGCAG	1 cut(s)	1442
Bsh1236I	CGCG	2 cut(s)	252, 2319
BshFI	GGCC	1 cut(s)	1598
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	6 cut(s)	162, 474, 542, 963, 1609, 1691
BslFI	GGGAC	4 cut(s)	144, 622, 1839, 2271
BslI	CCNNNNNNNGG	2 cut(s)	167, 1823
BsmAI	GTCTC	3 cut(s)	669, 912, 1753
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	4 cut(s)	144, 622, 1839, 2271
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	1598
Bso31I	GGTCTC	1 cut(s)	1753
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	2 cut(s)	1608, 1690
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	1 cut(s)	1948
BspANI	GGCC	1 cut(s)	1598
BspEI	TCCGGA	2 cut(s)	1608, 1690
BspFNI	CGCG	2 cut(s)	252, 2319
BspLI	GGNNCC	3 cut(s)	540, 1689, 1695
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	4 cut(s)	32, 736, 745, 1741
BspQI	GCTCTTC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	1753
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	3 cut(s)	987, 1743, 2229
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	3 cut(s)	297, 410, 1749
BssECI	CCNNGG	3 cut(s)	261, 1304, 1948
BssNI	GRCGYC	1 cut(s)	1621
BssT1I	CCWWGG	2 cut(s)	261, 1948
Bst2UI	CCWGG	4 cut(s)	1305, 1562, 1724, 1968
Bst4CI	ACNGT	4 cut(s)	138, 694, 1444, 2244
Bst6I	CTCTTC	6 cut(s)	52, 65, 213, 876, 1330, 1563
BstACI	GRCGYC	1 cut(s)	1621
BstAUI	TGTACA	1 cut(s)	1045
BstBAI	YACGTR	2 cut(s)	764, 2339
BstC8I	GCNNGC	5 cut(s)	12, 372, 774, 1663, 1914
BstDSI	CCRYGG	1 cut(s)	1948
BstF5I	GGATG	8 cut(s)	123, 358, 414, 437, 879, 993, 1207, 2332
BstFNI	CGCG	2 cut(s)	252, 2319
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	176, 237, 254, 656
BstMAI	GTCTC	3 cut(s)	669, 912, 1753
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 81, 180, 782, 1007, 1733
BstNI	CCWGG	4 cut(s)	1305, 1562, 1724, 1968
BstNSI	RCATGY	1 cut(s)	1052
BstSCI	CCNGG	6 cut(s)	160, 472, 1303, 1560, 1722, 1966
BstSFI	CTRYAG	2 cut(s)	1113, 2094
BstSNI	TACGTA	1 cut(s)	764
BstUI	CGCG	2 cut(s)	252, 2319
BstV2I	GAAGAC	2 cut(s)	1115, 1342
BstX2I	RGATCY	6 cut(s)	538, 1132, 1141, 1165, 1687, 2008
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	6 cut(s)	538, 1132, 1141, 1165, 1687, 2008
BsuRI	GGCC	1 cut(s)	1598
BtgI	CCRYGG	1 cut(s)	1948
BtsCI	GGATG	8 cut(s)	123, 358, 414, 437, 879, 993, 1207, 2332
BtsI	GCAGTG	5 cut(s)	286, 317, 545, 1359, 1438
BtsIMutI	CAGTG	7 cut(s)	286, 317, 545, 690, 1359, 1438, 1494
BveI	ACCTGC	4 cut(s)	32, 736, 745, 1741
Cac8I	GCNNGC	5 cut(s)	12, 372, 774, 1663, 1914
CaiI	CAGNNNCTG	2 cut(s)	24, 1448
CfoI	GCGC	4 cut(s)	176, 237, 254, 656
Cfr13I	GGNCC	4 cut(s)	144, 728, 1720, 1877
CseI	GACGC	4 cut(s)	199, 1263, 1610, 2079
Csp6I	GTAC	1 cut(s)	1046
CviAII	CATG	9 cut(s)	167, 214, 494, 1049, 1274, 1375, 1396, 1949, 2104
CviQI	GTAC	1 cut(s)	1046
Eam1104I	CTCTTC	6 cut(s)	52, 65, 213, 876, 1330, 1563
EarI	CTCTTC	6 cut(s)	52, 65, 213, 876, 1330, 1563
EciI	GGCGGA	3 cut(s)	31, 92, 247
Ecl136II	GAGCTC	1 cut(s)	223
Eco105I	TACGTA	1 cut(s)	764
Eco130I	CCWWGG	2 cut(s)	261, 1948
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	1753
Eco32I	GATATC	1 cut(s)	2003
Eco47I	GGWCC	4 cut(s)	144, 728, 1720, 1877
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	1199
Eco72I	CACGTG	1 cut(s)	2339
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	1877
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	4 cut(s)	1303, 1560, 1722, 1966
EcoRV	GATATC	1 cut(s)	2003
EcoT14I	CCWWGG	2 cut(s)	261, 1948
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	261, 1948
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	9 cut(s)	170, 217, 497, 1052, 1277, 1378, 1399, 1952, 2107
FalI	AAGNNNNNCTT	6 cut(s)	1327, 1359, 2025, 2057, 2114, 2146
FaqI	GGGAC	4 cut(s)	144, 622, 1839, 2271
FatI	CATG	9 cut(s)	166, 213, 493, 1048, 1273, 1374, 1395, 1948, 2103
FauI	CCCGC	1 cut(s)	582
FokI	GGATG	8 cut(s)	110, 365, 421, 424, 886, 1000, 1214, 2319
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	9 cut(s)	551, 608, 641, 698, 1290, 1316, 2015, 2112, 2312
FspI	TGCGCA	1 cut(s)	236
GlaI	GCGC	4 cut(s)	175, 236, 253, 655
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	1598
HapII	CCGG	6 cut(s)	162, 474, 542, 963, 1609, 1691
HgaI	GACGC	4 cut(s)	199, 1263, 1610, 2079
HhaI	GCGC	4 cut(s)	176, 237, 254, 656
Hin1I	GRCGYC	1 cut(s)	1621
Hin1II	CATG	9 cut(s)	170, 217, 497, 1052, 1277, 1378, 1399, 1952, 2107
Hin6I	GCGC	4 cut(s)	174, 235, 252, 654
HinP1I	GCGC	4 cut(s)	174, 235, 252, 654
HindIII	AAGCTT	2 cut(s)	302, 770
HpaII	CCGG	6 cut(s)	162, 474, 542, 963, 1609, 1691
HphI	GGTGA	3 cut(s)	604, 1003, 1166
Hpy166II	GTNNAC	6 cut(s)	193, 310, 1492, 1628, 1983, 2101
Hpy8I	GTNNAC	6 cut(s)	193, 310, 1492, 1628, 1983, 2101
Hpy99I	CGWCG	2 cut(s)	206, 1626
HpyAV	CCTTC	8 cut(s)	76, 343, 589, 826, 1174, 1868, 2075, 2166
HpyCH4III	ACNGT	4 cut(s)	138, 694, 1444, 2244
HpyCH4IV	ACGT	3 cut(s)	763, 1526, 2338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 81, 180, 782, 1007, 1733
HpySE526I	ACGT	3 cut(s)	763, 1526, 2338
Hsp92I	GRCGYC	1 cut(s)	1621
Hsp92II	CATG	9 cut(s)	170, 217, 497, 1052, 1277, 1378, 1399, 1952, 2107
HspAI	GCGC	4 cut(s)	174, 235, 252, 654
Kpn2I	TCCGGA	2 cut(s)	1608, 1690
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	5 cut(s)	44, 191, 228, 1308, 1693
LweI	GCATC	6 cut(s)	132, 343, 838, 1010, 1213, 2276
MaeI	CTAG	9 cut(s)	551, 608, 641, 698, 1290, 1316, 2015, 2112, 2312
MaeII	ACGT	3 cut(s)	763, 1526, 2338
MaeIII	GTNAC	3 cut(s)	430, 811, 1438
MbiI	CCGCTC	1 cut(s)	39
MflI	RGATCY	6 cut(s)	538, 1132, 1141, 1165, 1687, 2008
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	9 cut(s)	98, 116, 456, 484, 554, 900, 1923, 1953, 2295
MlyI	GAGTC	5 cut(s)	166, 644, 914, 1129, 1580
MmeI	TCCRAC	2 cut(s)	1863, 2058
MroI	TCCGGA	2 cut(s)	1608, 1690
MseI	TTAA	4 cut(s)	974, 1260, 2133, 2220
MslI	CAYNNNNRTG	4 cut(s)	1095, 1464, 2272, 2337
MspA1I	CMGCKG	3 cut(s)	72, 1112, 2069
MspI	CCGG	6 cut(s)	162, 474, 542, 963, 1609, 1691
MspR9I	CCNGG	6 cut(s)	162, 474, 1305, 1562, 1724, 1968
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	4 cut(s)	1305, 1562, 1724, 1968
MvnI	CGCG	2 cut(s)	252, 2319
MwoI	GCNNNNNNNGC	6 cut(s)	11, 81, 180, 782, 1007, 1733
NciI	CCSGG	2 cut(s)	162, 474
NcoI	CCATGG	1 cut(s)	1948
NlaIII	CATG	9 cut(s)	170, 217, 497, 1052, 1277, 1378, 1399, 1952, 2107
NlaIV	GGNNCC	3 cut(s)	540, 1689, 1695
NsbI	TGCGCA	1 cut(s)	236
NspI	RCATGY	1 cut(s)	1052
PaqCI	CACCTGC	1 cut(s)	32
PciI	ACATGT	1 cut(s)	1048
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	7 cut(s)	1015, 1054, 1270, 1678, 2051, 2206, 2214
PleI	GAGTC	5 cut(s)	165, 643, 913, 1128, 1579
PmaCI	CACGTG	1 cut(s)	2339
PmlI	CACGTG	1 cut(s)	2339
PpsI	GAGTC	5 cut(s)	165, 643, 913, 1128, 1579
Ppu21I	YACGTR	2 cut(s)	764, 2339
PpuMI	RGGWCCY	1 cut(s)	1877
PscI	ACATGT	1 cut(s)	1048
Psp124BI	GAGCTC	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	1877
Psp6I	CCWGG	4 cut(s)	1303, 1560, 1722, 1966
PspCI	CACGTG	1 cut(s)	2339
PspGI	CCWGG	4 cut(s)	1303, 1560, 1722, 1966
PspN4I	GGNNCC	3 cut(s)	540, 1689, 1695
PspPI	GGNCC	4 cut(s)	144, 728, 1720, 1877
PspPPI	RGGWCCY	1 cut(s)	1877
PstI	CTGCAG	1 cut(s)	1117
PstNI	CAGNNNCTG	2 cut(s)	24, 1448
PsuI	RGATCY	6 cut(s)	538, 1132, 1141, 1165, 1687, 2008
PvuII	CAGCTG	2 cut(s)	1112, 2069
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
RseI	CAYNNNNRTG	4 cut(s)	1095, 1464, 2272, 2337
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	974, 1260, 2133, 2220
Sau96I	GGNCC	4 cut(s)	144, 728, 1720, 1877
SchI	GAGTC	5 cut(s)	166, 644, 914, 1129, 1580
ScrFI	CCNGG	6 cut(s)	162, 474, 1305, 1562, 1724, 1968
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	6 cut(s)	132, 343, 838, 1010, 1213, 2276
SfcI	CTRYAG	2 cut(s)	1113, 2094
SinI	GGWCC	4 cut(s)	144, 728, 1720, 1877
SmiMI	CAYNNNNRTG	4 cut(s)	1095, 1464, 2272, 2337
SmlI	CTYRAG	2 cut(s)	338, 1228
SmoI	CTYRAG	2 cut(s)	338, 1228
SnaBI	TACGTA	1 cut(s)	764
Sse9I	AATT	9 cut(s)	98, 116, 456, 484, 554, 900, 1923, 1953, 2295
SspI	AATATT	3 cut(s)	1078, 1484, 2165
SspMI	CTAG	9 cut(s)	551, 608, 641, 698, 1290, 1316, 2015, 2112, 2312
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	6 cut(s)	160, 472, 1303, 1560, 1722, 1966
StyI	CCWWGG	2 cut(s)	261, 1948
TaaI	ACNGT	4 cut(s)	138, 694, 1444, 2244
TaiI	ACGT	3 cut(s)	766, 1529, 2341
TaqI	TCGA	3 cut(s)	204, 733, 1845
TasI	AATT	9 cut(s)	98, 116, 456, 484, 554, 900, 1923, 1953, 2295
TatI	WGTACW	1 cut(s)	1045
TauI	GCSGC	4 cut(s)	108, 174, 1601, 2128
TfiI	GAWTC	7 cut(s)	1015, 1054, 1270, 1678, 2051, 2206, 2214
Tru1I	TTAA	4 cut(s)	974, 1260, 2133, 2220
Tru9I	TTAA	4 cut(s)	974, 1260, 2133, 2220
TscAI	CASTG	7 cut(s)	286, 324, 552, 697, 1366, 1438, 1494
TspDTI	ATGAA	8 cut(s)	719, 1070, 1113, 1262, 1541, 2120, 2206, 2319
TspGWI	ACGGA	3 cut(s)	178, 1100, 1336
TspRI	CASTG	7 cut(s)	286, 324, 552, 697, 1366, 1438, 1494
VpaK11BI	GGWCC	4 cut(s)	144, 728, 1720, 1877
XapI	RAATTY	3 cut(s)	484, 554, 1953
XceI	RCATGY	1 cut(s)	1052
XspI	CTAG	9 cut(s)	551, 608, 641, 698, 1290, 1316, 2015, 2112, 2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.