Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036233.1

Orthogroup ID

OG0006046

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1607

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atcaaagcatttcttattggagattctcctcctttctcagctggtcagttggaagggatagcgtccatagtgaacatgaatactagagtagcaaagcggctctttaacagcagtctgcggtattggatattagaatatttgagaaggcagccaaaagaaaaaagatttcgtgcattgattcttagattcattaaggattgcattgcagccatactgttagttgaggtgggacttcaagcatctgtgtgggtgtctgtgggatcacaaattggagatgaagttctagttcgggtagaagaagctcatccacgtgatgatgtgctttttctcaaagaggtggtcattgatagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

9.3

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02250
fragaria_vesca	FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600
malus_domestica	MD04G1129900.v1.1 MD12G1143000.v1.1
prunus_persica	Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1
pyrus_communis	pycom04g11820
rosa_chinensis	RchiOBHm_Chr3g0466451
rosa_laevigata	RLG00000024573
rosa_multiflora	Rmu_sc0036233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002460 Rroxscaffold_6G00414460
rosa_rugosa	Rorug03G0082000
rosa_samantha	Rh3AG128500 Rh3BG149900 Rh3DG150600
rosa_wichuraiana	Rw3G012140 Rw3G012150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 118
AclWI	GGATC	1 cut(s)	268
AcvI	CACGTG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	2 cut(s)	41, 302
AluI	AGCT	2 cut(s)	41, 302
AlwI	GGATC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	148, 206
ArsI	GACNNNNNNTTYG	1 cut(s)	324
BbrPI	CACGTG	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	160, 218
BfaI	CTAG	2 cut(s)	84, 284
BisI	GCNGC	3 cut(s)	98, 149, 207
BlsI	GCNGC	3 cut(s)	99, 150, 208
BmsI	GCATC	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	160, 218
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	97, 118
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	201
BssMI	GATC	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	37, 182
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	160, 218
BtsCI	GGATG	1 cut(s)	304
CseI	GACGC	1 cut(s)	51
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	41, 100, 151, 209, 302
CviKI_1	RGCY	5 cut(s)	41, 100, 151, 209, 302
DdeI	CTNAG	2 cut(s)	37, 182
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	311
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	68, 77, 212
FalI	AAGNNNNNCTT	3 cut(s)	29, 86, 118
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	98, 149, 207
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	98, 149, 207
FspBI	CTAG	2 cut(s)	84, 284
GluI	GCNGC	3 cut(s)	98, 149, 207
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	3 cut(s)	23, 178, 186
Hpy166II	GTNNAC	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	47, 138
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	173, 201, 206
HpyF3I	CTNAG	2 cut(s)	37, 182
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	260
LpnPI	CCDG	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	160, 218
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	84, 284
MaeII	ACGT	1 cut(s)	310
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	308
MluCI	AATT	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	3 cut(s)	39, 217, 328
MseI	TTAA	2 cut(s)	105, 192
MslI	CAYNNNNRTG	2 cut(s)	244, 309
MspA1I	CMGCKG	1 cut(s)	41
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	23, 178, 186
PkrI	GCNGC	3 cut(s)	99, 150, 208
PmaCI	CACGTG	1 cut(s)	311
PmlI	CACGTG	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	311
PspCI	CACGTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	244, 309
SaqAI	TTAA	2 cut(s)	105, 192
SatI	GCNGC	3 cut(s)	98, 149, 207
Sau3AI	GATC	1 cut(s)	260
SetI	ASST	5 cut(s)	43, 228, 304, 313, 339
SfaNI	GCATC	1 cut(s)	248
SgeI	CNNG	9 cut(s)	54, 88, 96, 182, 248, 296, 302, 321, 323
SmiMI	CAYNNNNRTG	2 cut(s)	244, 309
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	2 cut(s)	97, 118
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	2 cut(s)	84, 284
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	1 cut(s)	313
TasI	AATT	1 cut(s)	267
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	3 cut(s)	23, 178, 186
Tru1I	TTAA	2 cut(s)	105, 192
Tru9I	TTAA	2 cut(s)	105, 192
TseI	GCWGC	2 cut(s)	148, 206
TspDTI	ATGAA	3 cut(s)	92, 178, 291
XspI	CTAG	2 cut(s)	84, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.