Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006046

Physical Location & Seq

Genomic Coordinates Reverse (-)

2921679 .. 2922239

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGTGCGAACCGTCACCACCTGCTCAATCTTCCGCTCCGCCTTTTCCCCTACTCTCTTCGCCTTCCGCTGCTGCCCGTGCCACTTCCACTTCCGCCACTTCTCCAAATTAGGCATCCGCTTCCCGCCGTTTTGGTCCGACAAGCCCGGTCCCGGCCATGGCGGCGCTCGAGCAGCTCCGTCCACGGCCCTCGTCGATAGCGTCATGGAAGAGCTCCAATTCTTGCGCACAAGAAGAGTTCGCGCCTCCGCCAAGGTGGAACTCACAAGCAGTGGAGAGATACTAGAGGATAAGCTAGTCAACCGAACACCGCAGAAAGGGATGCCGCTTGAGTTCAAGAAGGATGCGGAACGAGTATTGCCGGTCGTTGCTCGAAACCCGATGGCAAGAAGAACTGGATGGTGTCCGATCGAGATTTCAGACTTTATTCGAAAGCTCGGGAAAACTTGGATCCAAGCACCGCTAGAATTTGCTTGGGTTGAACTCCTTGAAAAGAATAAGCGGGTGAAGGTAGAAGAACTAGCGAGAGATGATATTTGGCGAGTGTGGAGTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

186

Amino Acids

21.34

Weight (kDa)

9.91

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02250
fragaria_vesca	FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600 FvH4_6g13600
malus_domestica	MD04G1129900.v1.1 MD12G1143000.v1.1
prunus_persica	Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1 Prupe.6G256600_v2.0.a1
pyrus_communis	pycom04g11820
rosa_chinensis	RchiOBHm_Chr3g0466451
rosa_laevigata	RLG00000024573
rosa_multiflora	Rmu_sc0036233.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002460 Rroxscaffold_6G00414460
rosa_rugosa	Rorug03G0082000
rosa_samantha	Rh3AG128500 Rh3BG149900 Rh3DG150600
rosa_wichuraiana	Rw3G012140 Rw3G012150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc16I	TGCGCA	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	246
AclWI	GGATC	2 cut(s)	448, 461
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	155, 161, 320
AgsI	TTSAA	3 cut(s)	340, 485, 494
AluBI	AGCT	4 cut(s)	179, 217, 298, 439
AluI	AGCT	4 cut(s)	179, 217, 298, 439
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	448, 461
Ama87I	CYCGRG	2 cut(s)	171, 440
AoxI	GGCC	2 cut(s)	157, 189
ApeKI	GCWGC	3 cut(s)	72, 75, 176
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	3 cut(s)	170, 231, 248
AspS9I	GGNCC	3 cut(s)	138, 152, 190
AsuC2I	CCSGG	2 cut(s)	150, 156
AsuHPI	GGTGA	2 cut(s)	10, 520
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	2 cut(s)	171, 440
AvaII	GGWCC	2 cut(s)	138, 152
BamHI	GGATCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	59, 62, 188
BccI	CCATC	2 cut(s)	379, 396
BceAI	ACGGC	2 cut(s)	115, 204
BcnI	CCSGG	2 cut(s)	150, 156
BfaI	CTAG	5 cut(s)	287, 299, 467, 524, 559
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	5 cut(s)	73, 76, 166, 177, 329
BlsI	GCNGC	5 cut(s)	74, 77, 167, 178, 330
Bme1390I	CCNGG	2 cut(s)	150, 156
Bme18I	GGWCC	2 cut(s)	138, 152
BmeT110I	CYCGRG	2 cut(s)	171, 440
BmgT120I	GGNCC	3 cut(s)	138, 152, 190
BmiI	GGNNCC	2 cut(s)	154, 455
BmrFI	CCNGG	2 cut(s)	150, 156
BmsI	GCATC	3 cut(s)	126, 315, 337
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	150, 156
BsaJI	CCNNGG	3 cut(s)	160, 186, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 161, 320
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	160, 186, 255
BseGI	GGATG	4 cut(s)	117, 330, 352, 407
BseLI	CCNNNNNNNGG	3 cut(s)	155, 161, 320
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	59, 62, 188
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	2 cut(s)	369, 414
BshFI	GGCC	2 cut(s)	159, 191
BsiEI	CGRYCG	2 cut(s)	369, 414
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	2 cut(s)	171, 440
BsiSI	CCGG	3 cut(s)	150, 156, 365
BslFI	GGGAC	2 cut(s)	138, 540
BslI	CCNNNNNNNGG	3 cut(s)	155, 161, 320
BsmFI	GGGAC	2 cut(s)	138, 540
BsnI	GGCC	2 cut(s)	159, 191
BsoBI	CYCGRG	2 cut(s)	171, 440
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	411, 453
Bsp19I	CCATGG	1 cut(s)	160
BspANI	GGCC	2 cut(s)	159, 191
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	154, 455
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	448, 461
BspQI	GCTCTTC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	160, 186, 255
BssMI	GATC	2 cut(s)	411, 453
BssT1I	CCWWGG	2 cut(s)	160, 255
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	65, 207, 232
BstBI	TTCGAA	1 cut(s)	433
BstDSI	CCRYGG	2 cut(s)	160, 186
BstF5I	GGATG	4 cut(s)	117, 330, 352, 407
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	170, 231, 248
BstKTI	GATC	2 cut(s)	414, 456
BstMBI	GATC	2 cut(s)	411, 453
BstMCI	CGRYCG	2 cut(s)	369, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 165, 176
BstSCI	CCNGG	2 cut(s)	148, 154
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	59, 62, 188
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	159, 191
BtgI	CCRYGG	2 cut(s)	160, 186
BtsCI	GGATG	4 cut(s)	117, 330, 352, 407
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	32
CfoI	GCGC	3 cut(s)	170, 231, 248
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	138, 152, 190
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	161, 208
CviJI	RGCY	7 cut(s)	148, 159, 179, 191, 217, 298, 439
CviKI_1	RGCY	7 cut(s)	148, 159, 179, 191, 217, 298, 439
DpnI	GATC	2 cut(s)	413, 455
DpnII	GATC	2 cut(s)	411, 453
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	65, 207, 232
EarI	CTCTTC	3 cut(s)	65, 207, 232
EciI	GGCGGA	3 cut(s)	31, 86, 241
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	160, 255
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	138, 152
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	2 cut(s)	171, 440
EcoICRI	GAGCTC	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	160, 255
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	160, 255
FaeI	CATG	2 cut(s)	164, 211
FaiI	YATR	2 cut(s)	162, 209
FaqI	GGGAC	2 cut(s)	138, 540
FatI	CATG	2 cut(s)	160, 207
FauI	CCCGC	2 cut(s)	135, 498
Fnu4HI	GCNGC	5 cut(s)	73, 76, 166, 177, 329
FokI	GGATG	4 cut(s)	104, 337, 359, 414
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	73, 76, 166, 177, 329
FspBI	CTAG	5 cut(s)	287, 299, 467, 524, 559
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	3 cut(s)	169, 230, 247
GluI	GCNGC	5 cut(s)	73, 76, 166, 177, 329
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	159, 191
HapII	CCGG	3 cut(s)	150, 156, 365
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	3 cut(s)	170, 231, 248
Hin1II	CATG	2 cut(s)	164, 211
Hin6I	GCGC	3 cut(s)	168, 229, 246
HinP1I	GCGC	3 cut(s)	168, 229, 246
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	3 cut(s)	150, 156, 365
HphI	GGTGA	2 cut(s)	10, 520
Hpy166II	GTNNAC	2 cut(s)	186, 304
Hpy188I	TCNGA	3 cut(s)	142, 411, 424
Hpy188III	TCNNGA	3 cut(s)	340, 415, 442
Hpy8I	GTNNAC	2 cut(s)	186, 304
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	76, 337, 505
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 165, 176
Hsp92II	CATG	2 cut(s)	164, 211
HspAI	GCGC	3 cut(s)	168, 229, 246
Kzo9I	GATC	2 cut(s)	411, 453
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	3 cut(s)	44, 184, 222
LpnPI	CCDG	5 cut(s)	37, 163, 169, 378, 384
Lsp1109I	GCAGC	3 cut(s)	59, 62, 188
LweI	GCATC	3 cut(s)	126, 315, 337
MaeI	CTAG	5 cut(s)	287, 299, 467, 524, 559
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	413, 455
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	2 cut(s)	411, 453
MboII	GAAGA	6 cut(s)	25, 52, 224, 249, 405, 530
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	110, 221, 470
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	203, 259, 283
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	3 cut(s)	150, 156, 365
MspR9I	CCNGG	2 cut(s)	150, 156
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	81, 165, 176
NciI	CCSGG	2 cut(s)	150, 156
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	411, 453
NlaIII	CATG	2 cut(s)	164, 211
NlaIV	GGNNCC	2 cut(s)	154, 455
NmuCI	GTSAC	1 cut(s)	16
NsbI	TGCGCA	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	74, 77, 167, 178, 330
Ple19I	CGATCG	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	154, 455
PspPI	GGNCC	3 cut(s)	138, 152, 190
PspXI	VCTCGAGB	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	453
PvuI	CGATCG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	207
SatI	GCNGC	5 cut(s)	73, 76, 166, 177, 329
Sau3AI	GATC	2 cut(s)	411, 453
Sau96I	GGNCC	3 cut(s)	138, 152, 190
ScrFI	CCNGG	2 cut(s)	150, 156
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	7 cut(s)	26, 181, 219, 261, 300, 441, 516
SfaNI	GCATC	3 cut(s)	126, 315, 337
Sfr274I	CTCGAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	2 cut(s)	138, 152
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	171, 332
SmoI	CTYRAG	2 cut(s)	171, 332
Sse9I	AATT	3 cut(s)	110, 221, 470
SspMI	CTAG	5 cut(s)	287, 299, 467, 524, 559
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	148, 154
StyI	CCWWGG	2 cut(s)	160, 255
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	5 cut(s)	172, 198, 376, 414, 433
TasI	AATT	3 cut(s)	110, 221, 470
TauI	GCSGC	2 cut(s)	168, 331
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	72, 75, 176
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	138, 152
XapI	RAATTY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	171
XspI	CTAG	5 cut(s)	287, 299, 467, 524, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.