pycom04g11820

Ribonuclease II, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
14770374 .. 14774447
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11820.6

Sequence Viewer

Length: 1539 bp
ATGCCTTTAGATGCTAAACCTCCCAAATCTTCTTGGTTGGTAGAAGAGAAAATCAGACACAAAATTGAGTCTCTTGAAGCTTATGCTATTGATGCTTGCACAATTGATGACCAAAGGAAAACAGCTGGAACAATCCTAAGAACAATGGGGATGGTAAAAACAGCCTCATCAGCTTTGAATCTCCTCATAGACATTGGCTATTTTCCTGAACATGTGAATCTTGACCTGTTGAAATTGAACATCCGTACTGATCATTCAGATGAAGTTATATCATCTGCAGAACATCTTTTGTCAGATTCCTCTGATTCAGATGAGATTGAAGGGCGAGATCTCACTCACTTGACGGTCTATGCTATTGATGTGGACGAGGCTGATGAGCTCGATGATGCCCTGAGTGCAACGAGGCTACAAGATGGACACATTAAAATATGGATTCATGTTGCAGATGCAACTAGGTTTCTTCAACCTGGGAGCATAGTAGACAGGGAGGCAATGAGAAGAGGAACTTCTGTATTCTTGCCCACTGCTACTTATCCTATGTTCCCAGAGAAACTTGCCATTGAGGGAATGAGTTTGCAACAAGGAGAGATTTGCAATGCGGTTACTGTATCTGTGGTGCTGCACTCCAATGGAAGCATTGCAGAATATTCAGTGGACAACTCAATTATTAAACCAACATACATGTTGACATATGAGAGTGCATCTAAGCTTCTTCATTTGAACCTGCAAGAAGAGGCTGAACTCAAAATCCTGTCTGAGGCTGCAACTATCCGGTCAATATGGCGTCGAGAACAGGGTGCAATTGACACAGCCACATTGGAAGCACGCATCAAAGTGGTTAATCCAGAGGATCCGCAGCCTGTGATTAATTTGTATGTAGAAAACCAGGCAGACCCTGCAATGCGACTTGTCACTGAGATGGTGGTACTCTGCGGAGAAGTTATAGCCACTTATGGTTCTAGAAATAACATTCCTTTACCCTATAGAGGACAACCCCAATCCAACATCGACACCTCTGTGTTTGCACATCTTCCAGAAGGACCTGTTAGAAACTCTGCTCTTGTTAAACTAATGTGTGCTGCTGAAATTGATTTCAGAAAACCTATATGTCATGGAATTTTAGGACTTCCAGATTATGTTCAGTTTACATCTCCCATCCGTAGATATATGGATCTACTAGCTCACTATCAGGTGAAAGCATTTCTTGCAGGGGAATCTCTTCCTTTCTCAGCTGGTCAGTTAGAAGGGATGGCATCTATTGTGAACATGAATGTAAGAGTAGCAAGGAGGCTCTTCAGCAGCAGTCTTCGGTACTGGATATTAGAATATCTGAGAAGGCAGCCAAAAGAAAAAGAGTATCGTGCGCTGATTCTTAGATTCATCAAGGATCAGATTGCGGCCATATTGTTAATTGAGGTGGGACTTCAATCTTCCGTGTGGGTGCCCGTGGGAGCTCAAATTAGAGATGAAGTTCTTGTTCGGGTAGAAGAAGCTCATCCACGCGATGATGTGCTTTTACTTAAAGAGGTTGTCATTTGA

Protein Analysis

513

Amino Acids

57.32

Weight (kDa)

5.21

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 1441
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 1503
AciI CCGC 4 cut(s) 599, 854, 933, 1397
AclWI GGATC 4 cut(s) 845, 858, 1179, 1395
AcoI YGGCCR 1 cut(s) 1398
AcsI RAATTY 1 cut(s) 1116
AcuI CTGAAG 1 cut(s) 1279
AcyI GRCGYC 1 cut(s) 784
AfaI GTAC 3 cut(s) 247, 927, 1313
AfiI CCNNNNNNNGG 2 cut(s) 757, 986
AflIII ACRYGT 2 cut(s) 211, 681
AgsI TTSAA 8 cut(s) 77, 178, 232, 238, 320, 464, 721, 1427
AjnI CCWGG 2 cut(s) 466, 885
AleI CACNNNNGTG 1 cut(s) 1016
AloI GAACNNNNNNTCC 2 cut(s) 732, 764
AluBI AGCT 9 cut(s) 80, 125, 173, 379, 709, 1181, 1232, 1454, 1493
AluI AGCT 9 cut(s) 80, 125, 173, 379, 709, 1181, 1232, 1454, 1493
Alw21I GWGCWC 2 cut(s) 381, 1456
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 4 cut(s) 845, 858, 1179, 1395
AlwNI CAGNNNCTG 1 cut(s) 896
AoxI GGCC 1 cut(s) 1398
ApeKI GCWGC 6 cut(s) 619, 761, 856, 1079, 1299, 1339
ApoI RAATTY 1 cut(s) 1116
AseI ATTAAT 1 cut(s) 867
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 1366
AspS9I GGNCC 1 cut(s) 1040
AsuHPI GGTGA 1 cut(s) 1204
AvaII GGWCC 1 cut(s) 1040
BaeGI GKGCMC 1 cut(s) 1446
BamHI GGATCC 1 cut(s) 850
BanI GGYRCC 1 cut(s) 1441
BanII GRGCYC 2 cut(s) 381, 1456
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 2 cut(s) 381, 1456
BbvI GCAGC 6 cut(s) 606, 748, 868, 1066, 1311, 1351
BccI CCATC 5 cut(s) 145, 407, 913, 1163, 1243
BciT130I CCWGG 2 cut(s) 468, 887
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 3 cut(s) 453, 960, 1178
BfmI CTRYAG 2 cut(s) 276, 982
BfuAI ACCTGC 1 cut(s) 732
BglII AGATCT 1 cut(s) 328
BisI GCNGC 7 cut(s) 620, 762, 857, 1080, 1300, 1340, 1398
BlsI GCNGC 7 cut(s) 621, 763, 858, 1081, 1301, 1341, 1399
Bme1390I CCNGG 2 cut(s) 468, 887
Bme18I GGWCC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 2 cut(s) 852, 1443
BmrFI CCNGG 2 cut(s) 468, 887
BmsI GCATC 6 cut(s) 82, 376, 436, 710, 837, 1262
BpiI GAAGAC 1 cut(s) 1298
BsaHI GRCGYC 1 cut(s) 784
BsaJI CCNNGG 2 cut(s) 467, 1446
BsaWI WCCGGW 1 cut(s) 771
Bsc4I CCNNNNNNNGG 2 cut(s) 757, 986
Bse1I ACTGG 1 cut(s) 1319
Bse3DI GCAATG 4 cut(s) 498, 601, 636, 906
BseBI CCWGG 2 cut(s) 468, 887
BseDI CCNNGG 2 cut(s) 467, 1446
BseGI GGATG 5 cut(s) 156, 240, 1155, 1254, 1495
BseLI CCNNNNNNNGG 2 cut(s) 757, 986
BseMI GCAATG 4 cut(s) 498, 601, 636, 906
BseMII CTCAG 5 cut(s) 383, 747, 906, 1242, 1322
BseNI ACTGG 1 cut(s) 1319
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 1446
BseXI GCAGC 6 cut(s) 606, 748, 868, 1066, 1311, 1351
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 1503
BshFI GGCC 1 cut(s) 1400
BshNI GGYRCC 1 cut(s) 1441
BsiHKAI GWGCWC 2 cut(s) 381, 1456
BsiSI CCGG 1 cut(s) 772
BslFI GGGAC 1 cut(s) 1434
BslI CCNNNNNNNGG 2 cut(s) 757, 986
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 1434
BsnI GGCC 1 cut(s) 1400
Bsp1286I GDGCHC 3 cut(s) 381, 1446, 1456
Bsp143I GATC 5 cut(s) 250, 328, 850, 1171, 1387
BspACI CCGC 4 cut(s) 599, 854, 933, 1397
BspANI GGCC 1 cut(s) 1400
BspCNI CTCAG 5 cut(s) 384, 748, 907, 1241, 1323
BspFNI CGCG 1 cut(s) 1503
BspLI GGNNCC 2 cut(s) 852, 1443
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 4 cut(s) 845, 858, 1179, 1395
BspQI GCTCTTC 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 1441
BsrDI GCAATG 4 cut(s) 498, 601, 636, 906
BsrI ACTGG 1 cut(s) 1319
BssECI CCNNGG 2 cut(s) 467, 1446
BssMI GATC 5 cut(s) 250, 328, 850, 1171, 1387
BssNI GRCGYC 1 cut(s) 784
Bst2UI CCWGG 2 cut(s) 468, 887
Bst4CI ACNGT 2 cut(s) 346, 607
Bst6I CTCTTC 5 cut(s) 39, 493, 726, 1224, 1298
BstACI GRCGYC 1 cut(s) 784
BstAPI GCANNNNNTGC 2 cut(s) 896, 1205
BstC8I GCNNGC 2 cut(s) 97, 826
BstDEI CTNAG 8 cut(s) 137, 392, 705, 756, 915, 1228, 1331, 1373
BstDSI CCRYGG 1 cut(s) 1446
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 5 cut(s) 156, 240, 1155, 1254, 1495
BstFNI CGCG 1 cut(s) 1503
BstHHI GCGC 1 cut(s) 1366
BstKTI GATC 5 cut(s) 253, 331, 853, 1174, 1390
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 5 cut(s) 250, 328, 850, 1171, 1387
BstMWI GCNNNNNNNGC 5 cut(s) 92, 170, 395, 896, 1205
BstNI CCWGG 2 cut(s) 468, 887
BstNSI RCATGY 2 cut(s) 215, 685
BstSCI CCNGG 2 cut(s) 466, 885
BstSFI CTRYAG 2 cut(s) 276, 982
BstSLI GKGCMC 1 cut(s) 1446
BstUI CGCG 1 cut(s) 1503
BstV1I GCAGC 6 cut(s) 606, 748, 868, 1066, 1311, 1351
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 3 cut(s) 328, 850, 1171
BstYI RGATCY 3 cut(s) 328, 850, 1171
BsuRI GGCC 1 cut(s) 1400
BtgI CCRYGG 1 cut(s) 1446
BtgZI GCGATG 1 cut(s) 1518
BtsCI GGATG 5 cut(s) 156, 240, 1155, 1254, 1495
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 522, 657, 912
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 97, 826
CaiI CAGNNNCTG 1 cut(s) 896
CfoI GCGC 1 cut(s) 1366
Cfr13I GGNCC 1 cut(s) 1040
CseI GACGC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 246, 926, 1312
CviAII CATG 5 cut(s) 212, 437, 682, 1112, 1267
CviQI GTAC 3 cut(s) 246, 926, 1312
DdeI CTNAG 8 cut(s) 137, 392, 705, 756, 915, 1228, 1331, 1373
DpnI GATC 5 cut(s) 252, 330, 852, 1173, 1389
DpnII GATC 5 cut(s) 250, 328, 850, 1171, 1387
EaeI YGGCCR 1 cut(s) 1398
Eam1104I CTCTTC 5 cut(s) 39, 493, 726, 1224, 1298
EarI CTCTTC 5 cut(s) 39, 493, 726, 1224, 1298
Ecl136II GAGCTC 2 cut(s) 379, 1454
Eco24I GRGCYC 2 cut(s) 381, 1456
Eco47I GGWCC 1 cut(s) 1040
Eco53kI GAGCTC 2 cut(s) 379, 1454
Eco57I CTGAAG 1 cut(s) 1279
EcoICRI GAGCTC 2 cut(s) 379, 1454
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 466, 885
EcoT38I GRGCYC 2 cut(s) 381, 1456
FaeI CATG 5 cut(s) 215, 440, 685, 1115, 1270
FalI AAGNNNNNCTT 4 cut(s) 490, 522, 1188, 1220
FaqI GGGAC 1 cut(s) 1434
FatI CATG 5 cut(s) 211, 436, 681, 1111, 1266
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 7 cut(s) 620, 762, 857, 1080, 1300, 1340, 1398
FokI GGATG 5 cut(s) 163, 227, 1142, 1261, 1482
FriOI GRGCYC 2 cut(s) 381, 1456
Fsp4HI GCNGC 7 cut(s) 620, 762, 857, 1080, 1300, 1340, 1398
FspBI CTAG 3 cut(s) 453, 960, 1178
GlaI GCGC 1 cut(s) 1365
GluI GCNGC 7 cut(s) 620, 762, 857, 1080, 1300, 1340, 1398
HaeIII GGCC 1 cut(s) 1400
HapII CCGG 1 cut(s) 772
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 1366
Hin1I GRCGYC 1 cut(s) 784
Hin1II CATG 5 cut(s) 215, 440, 685, 1115, 1270
Hin6I GCGC 1 cut(s) 1364
HinP1I GCGC 1 cut(s) 1364
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 2 cut(s) 78, 707
HinfI GANTC 9 cut(s) 68, 178, 217, 296, 305, 433, 1214, 1369, 1377
HpaII CCGG 1 cut(s) 772
HphI GGTGA 1 cut(s) 1204
Hpy166II GTNNAC 6 cut(s) 364, 481, 655, 687, 1146, 1264
Hpy188I TCNGA 9 cut(s) 56, 259, 295, 304, 310, 757, 1097, 1332, 1392
Hpy188III TCNNGA 8 cut(s) 74, 206, 221, 788, 845, 960, 1034, 1130
Hpy8I GTNNAC 6 cut(s) 364, 481, 655, 687, 1146, 1264
Hpy99I CGWCG 1 cut(s) 789
HpyAV CCTTC 4 cut(s) 314, 1031, 1238, 1329
HpyCH4III ACNGT 2 cut(s) 346, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 170, 395, 896, 1205
HpyF3I CTNAG 8 cut(s) 137, 392, 705, 756, 915, 1228, 1331, 1373
Hsp92I GRCGYC 1 cut(s) 784
Hsp92II CATG 5 cut(s) 215, 440, 685, 1115, 1270
HspAI GCGC 1 cut(s) 1364
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 5 cut(s) 250, 328, 850, 1171, 1387
LguI GCTCTTC 1 cut(s) 1298
LmnI GCTCC 2 cut(s) 471, 1451
Lsp1109I GCAGC 6 cut(s) 606, 748, 868, 1066, 1311, 1351
LweI GCATC 6 cut(s) 82, 376, 436, 710, 837, 1262
MaeI CTAG 3 cut(s) 453, 960, 1178
MaeIII GTNAC 2 cut(s) 601, 910
MalI GATC 5 cut(s) 252, 330, 852, 1173, 1389
MboI GATC 5 cut(s) 250, 328, 850, 1171, 1387
MfeI CAATTG 2 cut(s) 102, 801
MflI RGATCY 3 cut(s) 328, 850, 1171
MhlI GDGCHC 3 cut(s) 381, 1446, 1456
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 1026
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 7 cut(s) 423, 669, 840, 867, 1065, 1409, 1521
MslI CAYNNNNRTG 5 cut(s) 258, 627, 833, 917, 1016
MspA1I CMGCKG 2 cut(s) 125, 1232
MspI CCGG 1 cut(s) 772
MspR9I CCNGG 2 cut(s) 468, 887
MunI CAATTG 2 cut(s) 102, 801
MvaI CCWGG 2 cut(s) 468, 887
MvnI CGCG 1 cut(s) 1503
MwoI GCNNNNNNNGC 5 cut(s) 92, 170, 395, 896, 1205
NdeI CATATG 1 cut(s) 691
NdeII GATC 5 cut(s) 250, 328, 850, 1171, 1387
NlaIII CATG 5 cut(s) 215, 440, 685, 1115, 1270
NlaIV GGNNCC 2 cut(s) 852, 1443
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 2 cut(s) 215, 685
OliI CACNNNNGTG 1 cut(s) 1016
PciI ACATGT 2 cut(s) 211, 681
PciSI GCTCTTC 1 cut(s) 1298
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 8 cut(s) 178, 217, 296, 305, 433, 1214, 1369, 1377
PkrI GCNGC 7 cut(s) 621, 763, 858, 1081, 1301, 1341, 1399
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 1040
PscI ACATGT 2 cut(s) 211, 681
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 2 cut(s) 381, 1456
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 2 cut(s) 466, 885
PspGI CCWGG 2 cut(s) 466, 885
PspN4I GGNNCC 2 cut(s) 852, 1443
PspPI GGNCC 1 cut(s) 1040
PspPPI RGGWCCY 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 3 cut(s) 328, 850, 1171
PvuII CAGCTG 2 cut(s) 125, 1232
RsaI GTAC 3 cut(s) 247, 927, 1313
RsaNI GTAC 3 cut(s) 246, 926, 1312
RseI CAYNNNNRTG 5 cut(s) 258, 627, 833, 917, 1016
SacI GAGCTC 2 cut(s) 381, 1456
SapI GCTCTTC 1 cut(s) 1298
SaqAI TTAA 7 cut(s) 423, 669, 840, 867, 1065, 1409, 1521
SatI GCNGC 7 cut(s) 620, 762, 857, 1080, 1300, 1340, 1398
Sau3AI GATC 5 cut(s) 250, 328, 850, 1171, 1387
Sau96I GGNCC 1 cut(s) 1040
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 468, 887
SduI GDGCHC 3 cut(s) 381, 1446, 1456
SfaNI GCATC 6 cut(s) 82, 376, 436, 710, 837, 1262
SfcI CTRYAG 2 cut(s) 276, 982
SinI GGWCC 1 cut(s) 1040
SmiMI CAYNNNNRTG 5 cut(s) 258, 627, 833, 917, 1016
SsiI CCGC 4 cut(s) 599, 854, 933, 1397
SspI AATATT 1 cut(s) 647
SspMI CTAG 3 cut(s) 453, 960, 1178
SstI GAGCTC 2 cut(s) 381, 1456
StyD4I CCNGG 2 cut(s) 466, 885
TaaI ACNGT 2 cut(s) 346, 607
TaqI TCGA 3 cut(s) 381, 787, 1008
TauI GCSGC 1 cut(s) 1400
TfiI GAWTC 8 cut(s) 178, 217, 296, 305, 433, 1214, 1369, 1377
Tru1I TTAA 7 cut(s) 423, 669, 840, 867, 1065, 1409, 1521
Tru9I TTAA 7 cut(s) 423, 669, 840, 867, 1065, 1409, 1521
TscAI CASTG 3 cut(s) 529, 657, 919
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 6 cut(s) 619, 761, 856, 1079, 1299, 1339
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 6 cut(s) 276, 425, 704, 1283, 1369, 1482
TspGWI ACGGA 3 cut(s) 233, 1148, 1423
TspRI CASTG 3 cut(s) 529, 657, 919
VpaK11BI GGWCC 1 cut(s) 1040
VspI ATTAAT 1 cut(s) 867
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 1116
XbaI TCTAGA 1 cut(s) 959
XceI RCATGY 2 cut(s) 215, 685
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 3 cut(s) 453, 960, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.