Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

26551520 .. 26551987

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1173900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGTGGGATATTTGCGTATCTGAATTACGATGTCAACAGAGAGAGACGCTACATTCTTCAGGTGCTTTCCAATGGCCTGAGGCATTTGGAATACCTGAGATACGATTCCGACGGGATTTCCATCGATCATTCTTATTCCTTCGATCCAAACACCCTCCAATCTTCCACGCTTCACCCGTTCATTTTCCGCCAAGAGGGAAACATCGAGACCCTTGTCAAATCCGTATACCAAGAGGTTGCTGAAACAGATTTAAATTTGGAAGAATCTTTCTCTCACCATGCTGGAACAACACACACCCGGTGGGCCACTCATGGAGAGCCAGCTCCAAGGAACAGCCATCCACAGAGCTCTGGTTCTGGAAATGAATTTTTGGTTGTTCACAATAGAGTCATCACTAATTATGAGGCCTTAAAGGAATCACTAGTTCGGCACGGATTCACTTTTGAATCTGAAACAGACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

156

Amino Acids

17.81

Weight (kDa)

5.48

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	92 - 155	2.8e-08	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	256, 368
AcuI	CTGAAG	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	449
AhlI	ACTAGT	1 cut(s)	424
AluBI	AGCT	2 cut(s)	326, 351
AluI	AGCT	2 cut(s)	326, 351
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	40, 203
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	3 cut(s)	76, 306, 408
ApoI	RAATTY	2 cut(s)	256, 368
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	167, 269
AxyI	CCTNAGG	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	2 cut(s)	131, 348
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	40, 203
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	301
BoxI	GACNNNNGTC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse21I	CCTNAGG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	71, 89
BshFI	GGCC	3 cut(s)	78, 308, 410
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	40, 203
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	78, 308, 410
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	127, 145
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	3 cut(s)	78, 308, 410
BspCNI	CTCAG	2 cut(s)	72, 90
BspDI	ATCGAT	1 cut(s)	126
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	127, 145
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	329
Bst1107I	GTATAC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	80, 98
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	130, 148
BstMAI	GTCTC	2 cut(s)	40, 203
BstMBI	GATC	2 cut(s)	127, 145
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	78, 308, 410
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	281, 314
CviJI	RGCY	7 cut(s)	78, 308, 322, 326, 339, 351, 410
CviKI_1	RGCY	7 cut(s)	78, 308, 322, 326, 339, 351, 410
DdeI	CTNAG	2 cut(s)	80, 98
DpnI	GATC	2 cut(s)	129, 147
DpnII	GATC	2 cut(s)	127, 145
DraI	TTTAAA	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	2 cut(s)	284, 317
FaiI	YATR	5 cut(s)	229, 282, 315, 405, 466
FatI	CATG	2 cut(s)	280, 313
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	353
FspBI	CTAG	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	78, 308, 410
HapII	CCGG	1 cut(s)	301
HgaI	GACGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	284, 317
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	6 cut(s)	107, 266, 390, 419, 438, 449
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	167, 269
Hpy166II	GTNNAC	3 cut(s)	37, 229, 382
Hpy188I	TCNGA	3 cut(s)	24, 112, 454
Hpy188III	TCNNGA	2 cut(s)	208, 360
Hpy8I	GTNNAC	3 cut(s)	37, 229, 382
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	80, 98
Hsp92II	CATG	2 cut(s)	284, 317
Kzo9I	GATC	2 cut(s)	127, 145
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	8 cut(s)	47, 92, 110, 270, 314, 336, 339, 345
MaeI	CTAG	1 cut(s)	425
MalI	GATC	2 cut(s)	129, 147
MboI	GATC	2 cut(s)	127, 145
MboII	GAAGA	3 cut(s)	50, 156, 275
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	4 cut(s)	25, 256, 368, 400
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	75, 167, 190, 229, 400
MseI	TTAA	2 cut(s)	254, 413
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	301
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	2 cut(s)	127, 145
NlaIII	CATG	2 cut(s)	284, 317
PceI	AGGCCT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	5 cut(s)	107, 266, 419, 438, 449
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PshAI	GACNNNNGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	254, 413
Sau3AI	GATC	2 cut(s)	127, 145
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	5 cut(s)	66, 99, 240, 328, 353
SmiI	ATTTAAAT	1 cut(s)	255
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	4 cut(s)	25, 256, 368, 400
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	329
SwaI	ATTTAAAT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	126, 144, 207
TasI	AATT	4 cut(s)	25, 256, 368, 400
TfiI	GAWTC	5 cut(s)	107, 266, 419, 438, 449
Tru1I	TTAA	2 cut(s)	254, 413
Tru9I	TTAA	2 cut(s)	254, 413
TspDTI	ATGAA	2 cut(s)	172, 381
TspGWI	ACGGA	2 cut(s)	214, 450
XapI	RAATTY	2 cut(s)	256, 368
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.