Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

272686 .. 277836

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCAATGCGAAAAGACAATACCACCCTTGAGCTTTGGCCTCTCTCAAAATCTTCTAGATCACGCATTGTGTCAGTATTTTTACAAAGTCCCCTGTCTCAAATCCTCCCTCCTCCAATTTCAAATCCCCAGAAAAAGTCAGAGGTTACTTTCTTCCTTGTACGATTACTTGCTCAGAAGAATCAGAATCAGAAGCAGAAGAAGAAAAATGTGTGGGATATTTGCGTACCTGAATTACAACGTGAACCGAGAGAGGAGTTATATTCTTCAGGTGCTATTCAATGGCCTCCGGCGATTGGAGTACCGGGGATACGATTCCGCCGGAATTTCGATCGATCATTCCTCCTCTGATCCCAAAACCTCCTCTCTCCCTCCCTCTCTCGTTTTCCGCCAGGAGGGAAACATCGAGTCGCTCGTCAAATCCGTCTACCAAGAGGTGGCTGAAACAGACCTAAATTTGAAGCAATGTTTCTCTCACCATGCTGGAATAGCACATACCCGGTGGGCCACTCATGGAGAGCCCGCTCCAAGGAACAGCCACCCTCAGAGCTCTGATCCTGGAAATGAATTTTTGGTCGTTCACAATGGAGTTATTACTAATTACGAGGCCTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCTGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCATTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGGCATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTGGTTCATCTTAAGGATGGACACGTGTCAATCCTAAAGTTTGATAAAGAAAAGCATGGTGGCCTTTCAAAAGTTGCAGCAGTACAACGAGCATTGTCCATTCTTGAGATGGAGGTTGAACAAATAAATAAAGGAAATTTTGAACACTACATGCAGAAAGAAATTCATGAGCAGCCTGAATCTCTAACTACCACAATGAGGGGTAGGCTTTTACGTGGTGGTTCCTGCAAAGCCAAGACTGTTCTCCTTGGCGGACTGAAGGACCACCTTAAAACAATTAGGCGAAGCAGGCGAATTGTTTTCATTGGCTGTGGTACAAGCTACAATGCTGCTTTAGCTGCGAGACCTATCTTGGAAGAACTTTCAGGTATCCCTGTTACAATGGAAATTGCTAGTGATCTGTTGGATCGGCAAGGACCTATTTACAGAGAAGATACAGCTGTGTTTGTCAGTCAATCTGGTGAAACAGCAGATACTTTGAGTGCATTGGAATATGCTTCAGAAAATGGTGCATTATGTGTTGGCATAACAAATACCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGGTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGGCTATGCTTGCCCTAGCAATCGGAGGTGACACAATTTCCAATCAAGCAAGAAGAGAGGCTATAATTGACGGTTTATTTGACCTGCCCAACAAAGTCAGAGAGGTCCTGAAGCTTGACCAGGTAATGAAGGATCTTGCAAAACAATTGATAGCAGAGCAATCACTTCTTGTTTTTGGGAGAGGATACAACTATGCATCGGCTTTGGAGGGTGCTTTGAAGGTAAAGGAAGTAGCACTCATGCATAGTGAAGGAATACTTGCCGGTGAAATGAAACATGGTCCTTTGGCTTTAGTTGATGAAAATCTCCCAACTTTTGTGATTGCTACCCGTGATGCTTGCTTCAGTAAGCAGCAATCAGTTATTCAGCAGCTTCATGCCCGCAAAGGTCGTCTGATTGTAATGTGTTCGAAAGGAGATGCTGCATCTGTTTGCCCTGCGGAATGGGAGTCTTGTCGAGTGATTGAAGTTCCTCAGCTCGAGGATTGTCTTCAACCAGTAGTTAATATAGTTCCCTTGCAGCTGCTAGCATACCATCTCACAGTTTTAAGAGGTTTTAATGTGGATCAGCCTCGGAATCTTGCAAAGAGTGTGACAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

753

Amino Acids

83.41

Weight (kDa)

8.07

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	158 - 264	1.7e-13	Glutamine amidotransferase domain
GATase_7	PF13537	177 - 265	2.7e-09	Glutamine amidotransferase domain
SIS	PF01380	431 - 559	1.6e-34	SIS domain
SIS	PF01380	602 - 735	1.1e-18	SIS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1749
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
AclWI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
AcsI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
AcuI	CTGAAG	5 cut(s)	251, 1292, 1497, 1787, 1984
AcvI	CACGTG	1 cut(s)	1039
AdeI	CACNNNGTG	1 cut(s)	1583
AfaI	GTAC	5 cut(s)	161, 227, 302, 1098, 1330
AfiI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
AflII	CTTAAG	1 cut(s)	1025
AflIII	ACRYGT	2 cut(s)	1036, 1038
AjnI	CCWGG	3 cut(s)	390, 556, 1776
AleI	CACNNNNGTG	1 cut(s)	1584
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	101, 1351
AlwI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
Ama87I	CYCGRG	1 cut(s)	2135
AoxI	GGCC	5 cut(s)	37, 283, 504, 606, 1075
ApeKI	GCWGC	9 cut(s)	1091, 1186, 1343, 1352, 2008, 2026, 2078, 2176, 2179
ApoI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
ArsI	GACNNNNNNTTYG	2 cut(s)	1718, 1750
Asp700I	GAANNNNTTC	2 cut(s)	669, 1017
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
AsuC2I	CCSGG	2 cut(s)	305, 499
AsuHPI	GGTGA	8 cut(s)	467, 731, 1009, 1022, 1487, 1666, 1697, 1934
AsuII	TTCGAA	1 cut(s)	2066
AsuNHI	GCTAGC	2 cut(s)	881, 2182
AvaI	CYCGRG	1 cut(s)	2135
AvaII	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
BaeGI	GKGCMC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	1440, 1473
BanII	GRGCYC	2 cut(s)	522, 551
BbrPI	CACGTG	1 cut(s)	1039
BbsI	GAAGAC	1 cut(s)	2138
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	2130
BbvI	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
BccI	CCATC	5 cut(s)	1001, 1025, 1117, 1651, 2199
BceAI	ACGGC	1 cut(s)	953
BciT130I	CCWGG	3 cut(s)	392, 558, 1778
BciVI	GTATCC	3 cut(s)	302, 1394, 1835
BcnI	CCSGG	2 cut(s)	305, 499
BcoDI	GTCTC	2 cut(s)	101, 1351
BfaI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	1749
BfuI	GTATCC	3 cut(s)	302, 1394, 1835
BisI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
BlsI	GCNGC	9 cut(s)	1093, 1188, 1345, 1354, 2010, 2028, 2080, 2178, 2181
Bme1390I	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
Bme18I	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
BmeT110I	CYCGRG	1 cut(s)	2135
BmgT120I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
BmiI	GGNNCC	2 cut(s)	778, 1237
BmrFI	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
BmrI	ACTGGG	1 cut(s)	2251
BmsI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
BmtI	GCTAGC	2 cut(s)	885, 2186
BmuI	ACTGGG	1 cut(s)	2251
BoxI	GACNNNNGTC	1 cut(s)	1039
BpiI	GAAGAC	1 cut(s)	2138
Bpu10I	CCTNAGC	1 cut(s)	2130
Bpu14I	TTCGAA	1 cut(s)	2066
BpuEI	CTTGAG	2 cut(s)	49, 1139
BpuMI	CCSGG	2 cut(s)	305, 499
Bsa29I	ATCGAT	1 cut(s)	333
BsaAI	YACGTR	2 cut(s)	1039, 1229
BsaBI	GATNNNNATC	1 cut(s)	1959
BsaI	GGTCTC	1 cut(s)	1351
BsaJI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
Bse118I	RCCGGY	1 cut(s)	1919
Bse1I	ACTGG	3 cut(s)	954, 2153, 2257
Bse3DI	GCAATG	4 cut(s)	11, 470, 845, 892
Bse8I	GATNNNNATC	1 cut(s)	1959
BseBI	CCWGG	3 cut(s)	392, 558, 1778
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
BseGI	GGATG	3 cut(s)	931, 1012, 1036
BseJI	GATNNNNATC	1 cut(s)	1959
BseLI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
BseMI	GCAATG	4 cut(s)	11, 470, 845, 892
BseMII	CTCAG	4 cut(s)	187, 557, 1599, 2144
BseNI	ACTGG	3 cut(s)	954, 2153, 2257
BseRI	GAGGAG	4 cut(s)	101, 268, 334, 352
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	2135
BsiSI	CCGG	5 cut(s)	289, 304, 321, 499, 1920
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
BsmAI	GTCTC	2 cut(s)	101, 1351
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
Bso31I	GGTCTC	1 cut(s)	1351
BsoBI	CYCGRG	1 cut(s)	2135
Bsp119I	TTCGAA	1 cut(s)	2066
Bsp1286I	GDGCHC	3 cut(s)	522, 551, 620
Bsp143I	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BspACI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
BspANI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BspCNI	CTCAG	4 cut(s)	186, 556, 1600, 2143
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	2 cut(s)	901, 1180
BspLI	GGNNCC	2 cut(s)	778, 1237
BspMI	ACCTGC	1 cut(s)	1749
BspOI	GCTAGC	2 cut(s)	885, 2186
BspPI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
BspT104I	TTCGAA	1 cut(s)	2066
BspTI	CTTAAG	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1351
BsrBI	CCGCTC	1 cut(s)	524
BsrDI	GCAATG	4 cut(s)	11, 470, 845, 892
BsrFI	RCCGGY	1 cut(s)	1919
BsrI	ACTGG	3 cut(s)	954, 2153, 2257
BssAI	RCCGGY	1 cut(s)	1919
BssECI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
BssMI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BssT1I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
Bst2UI	CCWGG	3 cut(s)	392, 558, 1778
Bst4CI	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
Bst6I	CTCTTC	2 cut(s)	950, 1705
BstAFI	CTTAAG	1 cut(s)	1025
BstBAI	YACGTR	2 cut(s)	1039, 1229
BstBI	TTCGAA	1 cut(s)	2066
BstDEI	CTNAG	4 cut(s)	173, 543, 1608, 2130
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	931, 1012, 1036
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	9 cut(s)	61, 333, 337, 352, 556, 1414, 1423, 1792, 2224
BstMAI	GTCTC	2 cut(s)	101, 1351
BstMBI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
BstNI	CCWGG	3 cut(s)	392, 558, 1778
BstNSI	RCATGY	1 cut(s)	1168
BstPAI	GACNNNNGTC	1 cut(s)	1039
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	303, 390, 497, 556, 1776
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
BstV2I	GAAGAC	1 cut(s)	2138
BstX2I	RGATCY	1 cut(s)	1789
BstYI	RGATCY	1 cut(s)	1789
Bsu15I	ATCGAT	1 cut(s)	333
BsuI	GTATCC	3 cut(s)	302, 1394, 1835
BsuRI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	931, 1012, 1036
BtsIMutI	CAGTG	2 cut(s)	961, 1579
BveI	ACCTGC	1 cut(s)	1749
CciI	TCATGA	2 cut(s)	901, 1180
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	1919
Cfr13I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
ClaI	ATCGAT	1 cut(s)	333
CsiI	ACCWGGT	1 cut(s)	1776
Csp6I	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
CviQI	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
DdeI	CTNAG	4 cut(s)	173, 543, 1608, 2130
DpnI	GATC	9 cut(s)	60, 332, 336, 351, 555, 1413, 1422, 1791, 2223
DpnII	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
DraI	TTTAAA	1 cut(s)	796
DraIII	CACNNNGTG	1 cut(s)	1583
Eam1104I	CTCTTC	2 cut(s)	950, 1705
EarI	CTCTTC	2 cut(s)	950, 1705
EciI	GGCGGA	3 cut(s)	307, 377, 1281
Ecl136II	GAGCTC	1 cut(s)	549
Eco130I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	522, 551
Eco31I	GGTCTC	1 cut(s)	1351
Eco47I	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
Eco53kI	GAGCTC	1 cut(s)	549
Eco57I	CTGAAG	5 cut(s)	251, 1292, 1497, 1787, 1984
Eco72I	CACGTG	1 cut(s)	1039
Eco88I	CYCGRG	1 cut(s)	2135
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	1430, 1762
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	3 cut(s)	390, 556, 1776
EcoT14I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
EcoT22I	ATGCAT	2 cut(s)	1855, 1902
EcoT38I	GRGCYC	2 cut(s)	522, 551
ErhI	CCWWGG	4 cut(s)	527, 853, 1261, 1629
FalI	AAGNNNNNCTT	2 cut(s)	1899, 1931
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	2 cut(s)	529, 2045
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
FokI	GGATG	3 cut(s)	918, 1019, 1043
FriOI	GRGCYC	2 cut(s)	522, 551
Fsp4HI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
FspBI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
HaeIII	GGCC	5 cut(s)	39, 285, 506, 608, 1077
HapII	CCGG	5 cut(s)	289, 304, 321, 499, 1920
HhaI	GCGC	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HindIII	AAGCTT	2 cut(s)	677, 1769
HinfI	GANTC	7 cut(s)	180, 186, 314, 407, 1193, 2105, 2233
HpaII	CCGG	5 cut(s)	289, 304, 321, 499, 1920
HphI	GGTGA	8 cut(s)	467, 731, 1009, 1022, 1487, 1666, 1697, 1934
Hpy166II	GTNNAC	4 cut(s)	244, 427, 580, 833
Hpy188III	TCNNGA	6 cut(s)	56, 770, 902, 1118, 1181, 1765
Hpy8I	GTNNAC	4 cut(s)	244, 427, 580, 833
HpyAV	CCTTC	7 cut(s)	704, 710, 767, 1267, 1780, 1870, 1901
HpyCH4III	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
HpyCH4IV	ACGT	4 cut(s)	240, 835, 1038, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
HpyF3I	CTNAG	4 cut(s)	173, 543, 1608, 2130
HpySE526I	ACGT	4 cut(s)	240, 835, 1038, 1228
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
LmnI	GCTCC	3 cut(s)	529, 776, 855
Lsp1109I	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
LweI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
MabI	ACCWGGT	1 cut(s)	1776
MaeI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
MaeII	ACGT	4 cut(s)	240, 835, 1038, 1228
MaeIII	GTNAC	6 cut(s)	144, 719, 1390, 1571, 1685, 2248
MalI	GATC	9 cut(s)	60, 332, 336, 351, 555, 1413, 1422, 1791, 2223
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
MfeI	CAATTG	1 cut(s)	1802
MflI	RGATCY	1 cut(s)	1789
MhlI	GDGCHC	3 cut(s)	522, 551, 620
MlyI	GAGTC	2 cut(s)	416, 2114
MmeI	TCCRAC	1 cut(s)	1398
Mph1103I	ATGCAT	2 cut(s)	1855, 1902
MroXI	GAANNNNTTC	2 cut(s)	669, 1017
MseI	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
MslI	CAYNNNNRTG	2 cut(s)	1584, 1596
MspA1I	CMGCKG	2 cut(s)	1454, 2179
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	5 cut(s)	289, 304, 321, 499, 1920
MspR9I	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
MunI	CAATTG	1 cut(s)	1802
MvaI	CCWGG	3 cut(s)	392, 558, 1778
MwoI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
NciI	CCSGG	2 cut(s)	305, 499
NdeII	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
NheI	GCTAGC	2 cut(s)	881, 2182
NlaIV	GGNNCC	2 cut(s)	778, 1237
NmuCI	GTSAC	3 cut(s)	719, 1685, 2248
NsiI	ATGCAT	2 cut(s)	1855, 1902
NspI	RCATGY	1 cut(s)	1168
NspV	TTCGAA	1 cut(s)	2066
OliI	CACNNNNGTG	1 cut(s)	1584
PaeR7I	CTCGAG	1 cut(s)	2135
PagI	TCATGA	2 cut(s)	901, 1180
PceI	AGGCCT	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 420
PdmI	GAANNNNTTC	2 cut(s)	669, 1017
PfeI	GAWTC	5 cut(s)	180, 186, 314, 1193, 2233
PflMI	CCANNNNNTGG	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	9 cut(s)	1093, 1188, 1345, 1354, 2010, 2028, 2080, 2178, 2181
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	2 cut(s)	415, 2113
PmaCI	CACGTG	1 cut(s)	1039
PmlI	CACGTG	1 cut(s)	1039
PpsI	GAGTC	2 cut(s)	415, 2113
Ppu21I	YACGTR	2 cut(s)	1039, 1229
PpuMI	RGGWCCY	2 cut(s)	1430, 1762
PshAI	GACNNNNGTC	1 cut(s)	1039
Psp124BI	GAGCTC	1 cut(s)	551
Psp5II	RGGWCCY	2 cut(s)	1430, 1762
Psp6I	CCWGG	3 cut(s)	390, 556, 1776
PspCI	CACGTG	1 cut(s)	1039
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	390, 556, 1776
PspN4I	GGNNCC	2 cut(s)	778, 1237
PspPI	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
PspPPI	RGGWCCY	2 cut(s)	1430, 1762
PspXI	VCTCGAGB	1 cut(s)	2135
PsuI	RGATCY	1 cut(s)	1789
PvuI	CGATCG	1 cut(s)	333
PvuII	CAGCTG	2 cut(s)	1454, 2179
RsaI	GTAC	5 cut(s)	161, 227, 302, 1098, 1330
RsaNI	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
RseI	CAYNNNNRTG	2 cut(s)	1584, 1596
SacI	GAGCTC	1 cut(s)	551
SaqAI	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
SatI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
Sau3AI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
Sau96I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
SchI	GAGTC	2 cut(s)	416, 2114
ScrFI	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
SduI	GDGCHC	3 cut(s)	522, 551, 620
SexAI	ACCWGGT	1 cut(s)	1776
SfaNI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
Sfr274I	CTCGAG	1 cut(s)	2135
SfuI	TTCGAA	1 cut(s)	2066
SinI	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
SlaI	CTCGAG	1 cut(s)	2135
SmiMI	CAYNNNNRTG	2 cut(s)	1584, 1596
SmlI	CTYRAG	4 cut(s)	28, 1025, 1118, 2135
SmoI	CTYRAG	4 cut(s)	28, 1025, 1118, 2135
SseBI	AGGCCT	1 cut(s)	608
SsiI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
SspMI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
SstI	GAGCTC	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	608
StyD4I	CCNGG	5 cut(s)	303, 390, 497, 556, 1776
StyI	CCWWGG	4 cut(s)	527, 853, 1261, 1629
TaaI	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
TaiI	ACGT	4 cut(s)	243, 838, 1041, 1231
TaqI	TCGA	6 cut(s)	329, 333, 405, 2066, 2113, 2136
TatI	WGTACW	1 cut(s)	1096
TfiI	GAWTC	5 cut(s)	180, 186, 314, 1193, 2233
Tru1I	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
Tru9I	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
TscAI	CASTG	2 cut(s)	961, 1586
TseFI	GTSAC	3 cut(s)	719, 1685, 2248
TseI	GCWGC	9 cut(s)	1091, 1186, 1343, 1352, 2008, 2026, 2078, 2176, 2179
Tsp45I	GTSAC	3 cut(s)	719, 1685, 2248
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	961, 1586
Van91I	CCANNNNNTGG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
XapI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	1168
XcmI	CCANNNNNNNNNTGG	2 cut(s)	991, 1120
XhoI	CTCGAG	1 cut(s)	2135
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	669, 1017
XspI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
Zsp2I	ATGCAT	2 cut(s)	1855, 1902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.