Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

308988 .. 334198

Gene Structure 25211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGCCTCACAAAGCTATTGGCTGCTATTACTTTGGCAACAGTATGTCAGGATTAGTCTACATTTCTCCTGCCAACAACCCCTCAAATGAGATGCCGAATGAGCTGTTTCCTGCTGCCATTGATGCGACTGACATGACGGAATCAACCGAGGACACCTCTAAAGAGTTAATTTTATGCAACTATTTATTGGTGTCTTCAGGTAGGGGTTTTATTGGTTCTTCTCCAATTAAAGGGTATCAAGTTGATCTTGCAGCAGATGAAGCCGGAGGGAGGAGTATAGCTCAAGGGCTCTATCCCAAAAAAAAAAAAAAAGGATTATGCAGTGCTTGGCATCACACTTGGGATGAGAGGAATAAGTTGTTTCAGAAAAGGGACCCTGAAGGAGCTATGTTGAAGTATGAGAAAGCCCTCAGATTGCTTCCGAGAAATCACATTGATGTGTCCTATCTTCGAAGTAATATGGCGGCTTGTTATATGCAGATGGAGCTGAGTGAGTTGGATTTGGCTCTGAGATATGTTGGTACCGTGTTGAACATGGAACCGAACAATATCATGGTTGCAGAAAGAGTGAAAGATGTGCTAGAGAAGAAAGGATTGAGGGTGAATGACATTGACACGGTTGAAGCTGGGTCTCGGAATTGTGCTATTTCTCTCATCTACAGCAGCATGGACTGTAATTTTGCTCTCAGTGAGGCTTCTGATATACAAGGAATGTCAGATGGAGATGAAGGACTTGGTAAAAGGGTGGCCGATCAGGAGGACAATGGAACCAGAAAGTTGCCAAAATCTTTGAGCACAAGCTTTGTATCTCTTGATAGACGGAGAGTATTATGGACCAAGGAAGAGGAACAAGCTTTAAAGGAGGGAGTGAAGGAATCTTGGACCTGTCCACAAATGGAAAGTCTATACCCTGGGAGAAAATTTGTCAGGCTTTCAAAGATGGATATATTTCATAGTTCATACTGTTCAAGTACTGCAGCTTATCTCAAGGATAAATGGAAGAGTTGTTTTGAGGAATTGCAGGTGCTATTCAATGGCCTCCGGCGATTGGAGTACCGGGGATACGATTCCGCCGGAATTTCGATCGATCATTCCTCCTCTGATCCCAAAACCTCCTCTCTCCCTCCCTCTCTCGTTTTTCGCCAGGAGGGAAACATCGAGTCGCTCGTCAAATCCGTCTACCAAGAGGTGGCTGAAACAGACCTAAATTTGAAGCAATGTTTCTCTCACCATGCTGGAATAGCACATACCCGGTGGGCCACTCATGGAGAGCCCGCTCCAAGGAACAGCCACCCTCAGAGCTCTGATCCTGGAAATGAATTTTTGGTCGTTCACAATGGGGTCATTACTAATTACGAGGCTTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCCGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCGTTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTCGTTCATCTTAAGGATGGACACGTGTCAATCCTAAAGTTTGATAAAGAAAAGCATGGTGGCCTTTCAAAAGTTGCATCAGTACAACGAGCATTGTCCATTCTTGAGATGGAGGTTGAACAAATAAATAAGGGAAATTTTGAACACTACATGCAGAAAGAAATTCATGAGCAGCCTGAATCTCTAACTACCACAATGAGGGGTAGGCTTTTACGTGGTGGTTCCTGCAAAGCCAAGACTGTTCTCCTTGGCGGACTGAAGGACCACCTTAAAACAATTAGGCGAAGCAGGCGAATTGTTTTCATTGGCTGTGGTACAAGCTACAATGCTGCTTTAGCTGCGAGACCTATCTTGGAAGAACTTTCAGGTATCCCTGTTACAATGGAAATTGCTAGTGATCTGTTGGATCGGCAAGGACCTATTTACAGAGAAGATACAGCTGTGTTTGTCAGTCAATCTGGTGAAACAGCAGATACTTTGAGTGCATTGGAATATGCTTTAGAAAATGGTGCATTATGTGTTGGCATAACAAATACCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGGTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGGCCATGCTTGCCCTAGCAATTGGAGGTGACACAATTTCAAATCAAGCAAGAAGAGAGGCTATAATTGACGGTTTATTTGACCTGCCAAACAAAGTCAGAGAGGTCCTGAAGCTTGACCAGGTAATGAAGGATCTTGCAAAACAATTGATAGCAGAGCAATCACTTCTTGTTTTTGGGAGAGGATACAACTATGCATCGGCTTTGGAGGGTGCTTTGAAGGTAAAGGAAGTAGCACTCATGCATAGTGAAGGAATACTTGCCGGTGAAATGAAACATGGACCTTTGGCTTTAGTTGATGAAAATCTCCCAACTTTTGTGATTGCTACCCGTGATGCTTGCTTCAGTAAGCAGCAATCAGTTATTCAGCAGCTTCATGCCCGCAAAGGTCGTCTGATTGTAATGTGTTCGAAAGGAGATGCTGCATCTGTTTGCCCTGCGGAATGGGAGTCTTGTCGAGTGATTGAAGTTCCTCAGCTCGAGGATTGTCTTCAACCTGTAGTTAATATAGTTCCCTTGCAGTTGCTGGCATACCATCTCACAGTTTTAAGAGGTTTTAATGTGGATCAGCCTCGGAATCTTGCAAAGAGTGTGACAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

1004

Amino Acids

110.88

Weight (kDa)

6.31

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	409 - 525	8e-14	Glutamine amidotransferase domain
GATase_7	PF13537	428 - 521	2.2e-09	Glutamine amidotransferase domain
SIS	PF01380	682 - 810	3.7e-34	SIS domain
SIS	PF01380	853 - 986	1.7e-18	SIS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1012
Acc36I	ACCTGC	2 cut(s)	1012, 2502
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	1189
AccBSI	CCGCTC	1 cut(s)	1277
AccI	GTMKAC	2 cut(s)	57, 1179
AciI	CCGC	6 cut(s)	464, 1071, 1275, 2019, 2791, 2849
AclWI	GGATC	5 cut(s)	1097, 1301, 2181, 2550, 2982
AcoI	YGGCCR	2 cut(s)	747, 2412
AcsI	RAATTY	6 cut(s)	920, 1077, 1207, 1319, 1903, 1929
AcuI	CTGAAG	5 cut(s)	180, 399, 2045, 2540, 2737
AcvI	CACGTG	1 cut(s)	1792
AdeI	CACNNNGTG	1 cut(s)	2336
AfaI	GTAC	5 cut(s)	523, 973, 1055, 1851, 2083
AfiI	CCNNNNNNNGG	6 cut(s)	230, 270, 1048, 1189, 1281, 1965
AflII	CTTAAG	1 cut(s)	1778
AflIII	ACRYGT	2 cut(s)	1789, 1791
AjnI	CCWGG	4 cut(s)	910, 1143, 1309, 2529
AleI	CACNNNNGTG	1 cut(s)	2337
Alw21I	GWGCWC	2 cut(s)	797, 1304
Alw26I	GTCTC	2 cut(s)	636, 2104
AlwI	GGATC	5 cut(s)	1097, 1301, 2181, 2550, 2982
AlwNI	CAGNNNCTG	1 cut(s)	2935
Ama87I	CYCGRG	1 cut(s)	2888
AoxI	GGCC	5 cut(s)	747, 1036, 1257, 1828, 2412
ApoI	RAATTY	6 cut(s)	920, 1077, 1207, 1319, 1903, 1929
ArsI	GACNNNNNNTTYG	6 cut(s)	662, 694, 886, 918, 2471, 2503
Asp700I	GAANNNNTTC	2 cut(s)	1422, 1770
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	1540
AspS9I	GGNCC	8 cut(s)	373, 834, 882, 1257, 2029, 2183, 2515, 2690
AsuC2I	CCSGG	2 cut(s)	1058, 1252
AsuHPI	GGTGA	9 cut(s)	613, 1220, 1484, 1762, 1775, 2240, 2419, 2450, 2687
AsuII	TTCGAA	2 cut(s)	451, 2819
AsuNHI	GCTAGC	1 cut(s)	1634
AvaI	CYCGRG	1 cut(s)	2888
AvaII	GGWCC	7 cut(s)	373, 834, 882, 2029, 2183, 2515, 2690
BaeGI	GKGCMC	1 cut(s)	1373
BaeI	ACNNNNGTAYC	2 cut(s)	2193, 2226
BalI	TGGCCA	1 cut(s)	2414
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	3 cut(s)	291, 1275, 1304
BbrPI	CACGTG	1 cut(s)	1792
BbsI	GAAGAC	2 cut(s)	186, 2891
Bbv12I	GWGCWC	2 cut(s)	797, 1304
BbvCI	CCTCAGC	1 cut(s)	2883
BccI	CCATC	8 cut(s)	475, 713, 934, 1754, 1778, 1870, 2404, 2952
BceAI	ACGGC	1 cut(s)	1706
BciT130I	CCWGG	4 cut(s)	912, 1145, 1311, 2531
BciVI	GTATCC	3 cut(s)	1055, 2147, 2588
BcnI	CCSGG	2 cut(s)	1058, 1252
BcoDI	GTCTC	2 cut(s)	636, 2104
BfaI	CTAG	5 cut(s)	581, 1376, 1635, 2160, 2426
BfmI	CTRYAG	3 cut(s)	658, 975, 2907
BfrI	CTTAAG	1 cut(s)	1778
BfuAI	ACCTGC	2 cut(s)	1012, 2502
BfuI	GTATCC	3 cut(s)	1055, 2147, 2588
BmcAI	AGTACT	1 cut(s)	973
Bme1390I	CCNGG	6 cut(s)	912, 1058, 1145, 1252, 1311, 2531
Bme18I	GGWCC	7 cut(s)	373, 834, 882, 2029, 2183, 2515, 2690
BmeT110I	CYCGRG	1 cut(s)	2888
BmgT120I	GGNCC	8 cut(s)	373, 834, 882, 1257, 2029, 2183, 2515, 2690
BmiI	GGNNCC	7 cut(s)	374, 375, 523, 540, 769, 1531, 1990
BmrFI	CCNGG	6 cut(s)	912, 1058, 1145, 1252, 1311, 2531
BmrI	ACTGGG	1 cut(s)	3004
BmtI	GCTAGC	1 cut(s)	1638
BmuI	ACTGGG	1 cut(s)	3004
BoxI	GACNNNNGTC	1 cut(s)	1792
BpiI	GAAGAC	2 cut(s)	186, 2891
BplI	GAGNNNNNCTC	4 cut(s)	140, 172, 265, 297
Bpu10I	CCTNAGC	1 cut(s)	2883
Bpu14I	TTCGAA	2 cut(s)	451, 2819
BpuEI	CTTGAG	3 cut(s)	267, 971, 1892
BpuMI	CCSGG	2 cut(s)	1058, 1252
Bsa29I	ATCGAT	1 cut(s)	1086
BsaAI	YACGTR	2 cut(s)	1792, 1982
BsaBI	GATNNNNATC	1 cut(s)	2712
BsaI	GGTCTC	2 cut(s)	636, 2104
Bsc4I	CCNNNNNNNGG	6 cut(s)	230, 270, 1048, 1189, 1281, 1965
Bse118I	RCCGGY	2 cut(s)	1554, 2672
Bse1I	ACTGG	2 cut(s)	1707, 3010
Bse3DI	GCAATG	2 cut(s)	1223, 1645
Bse8I	GATNNNNATC	1 cut(s)	2712
BseBI	CCWGG	4 cut(s)	912, 1145, 1311, 2531
BseCI	ATCGAT	1 cut(s)	1086
BseGI	GGATG	4 cut(s)	349, 1684, 1765, 1789
BseJI	GATNNNNATC	1 cut(s)	2712
BseLI	CCNNNNNNNGG	6 cut(s)	230, 270, 1048, 1189, 1281, 1965
BseMI	GCAATG	2 cut(s)	1223, 1645
BseMII	CTCAG	7 cut(s)	424, 479, 500, 700, 1310, 2352, 2897
BseNI	ACTGG	2 cut(s)	1707, 3010
BseRI	GAGGAG	3 cut(s)	286, 1087, 1105
BseSI	GKGCMC	1 cut(s)	1373
BseYI	CCCAGC	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	1086
BshFI	GGCC	5 cut(s)	749, 1038, 1259, 1830, 2414
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	1086
BsiEI	CGRYCG	1 cut(s)	1086
BsiHKAI	GWGCWC	2 cut(s)	797, 1304
BsiHKCI	CYCGRG	1 cut(s)	2888
BsiSI	CCGG	7 cut(s)	264, 1042, 1057, 1074, 1252, 1555, 2673
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	6 cut(s)	230, 270, 1048, 1189, 1281, 1965
BsmAI	GTCTC	2 cut(s)	636, 2104
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	5 cut(s)	749, 1038, 1259, 1830, 2414
Bso31I	GGTCTC	2 cut(s)	636, 2104
BsoBI	CYCGRG	1 cut(s)	2888
Bsp119I	TTCGAA	2 cut(s)	451, 2819
Bsp1286I	GDGCHC	5 cut(s)	291, 797, 1275, 1304, 1373
BspACI	CCGC	6 cut(s)	464, 1071, 1275, 2019, 2791, 2849
BspANI	GGCC	5 cut(s)	749, 1038, 1259, 1830, 2414
BspCNI	CTCAG	7 cut(s)	423, 480, 501, 699, 1309, 2353, 2896
BspDI	ATCGAT	1 cut(s)	1086
BspHI	TCATGA	2 cut(s)	1654, 1933
BspLI	GGNNCC	7 cut(s)	374, 375, 523, 540, 769, 1531, 1990
BspMAI	CTGCAG	1 cut(s)	979
BspMI	ACCTGC	2 cut(s)	1012, 2502
BspOI	GCTAGC	1 cut(s)	1638
BspPI	GGATC	5 cut(s)	1097, 1301, 2181, 2550, 2982
BspT104I	TTCGAA	2 cut(s)	451, 2819
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	1 cut(s)	1778
BspTNI	GGTCTC	2 cut(s)	636, 2104
BsrBI	CCGCTC	1 cut(s)	1277
BsrDI	GCAATG	2 cut(s)	1223, 1645
BsrFI	RCCGGY	2 cut(s)	1554, 2672
BsrI	ACTGG	2 cut(s)	1707, 3010
BssAI	RCCGGY	2 cut(s)	1554, 2672
BssT1I	CCWWGG	5 cut(s)	837, 1280, 1606, 2014, 2382
Bst2UI	CCWGG	4 cut(s)	912, 1145, 1311, 2531
Bst6I	CTCTTC	4 cut(s)	837, 995, 1703, 2458
BstAFI	CTTAAG	1 cut(s)	1778
BstBAI	YACGTR	2 cut(s)	1792, 1982
BstBI	TTCGAA	2 cut(s)	451, 2819
BstDEI	CTNAG	7 cut(s)	410, 488, 509, 686, 1296, 2361, 2883
BstEII	GGTNACC	1 cut(s)	1472
BstF5I	GGATG	4 cut(s)	349, 1684, 1765, 1789
BstHHI	GCGC	1 cut(s)	1540
BstMAI	GTCTC	2 cut(s)	636, 2104
BstMCI	CGRYCG	1 cut(s)	1086
BstMWI	GCNNNNNNNGC	9 cut(s)	100, 122, 260, 484, 1241, 2056, 2102, 2105, 2420
BstNI	CCWGG	4 cut(s)	912, 1145, 1311, 2531
BstNSI	RCATGY	1 cut(s)	1921
BstPAI	GACNNNNGTC	1 cut(s)	1792
BstPI	GGTNACC	1 cut(s)	1472
BstSCI	CCNGG	6 cut(s)	910, 1056, 1143, 1250, 1309, 2529
BstSFI	CTRYAG	3 cut(s)	658, 975, 2907
BstSLI	GKGCMC	1 cut(s)	1373
BstV2I	GAAGAC	2 cut(s)	186, 2891
BstX2I	RGATCY	1 cut(s)	2542
BstYI	RGATCY	1 cut(s)	2542
Bsu15I	ATCGAT	1 cut(s)	1086
BsuI	GTATCC	3 cut(s)	1055, 2147, 2588
BsuRI	GGCC	5 cut(s)	749, 1038, 1259, 1830, 2414
BsuTUI	ATCGAT	1 cut(s)	1086
BtsCI	GGATG	4 cut(s)	349, 1684, 1765, 1789
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	4 cut(s)	328, 694, 1714, 2332
BveI	ACCTGC	2 cut(s)	1012, 2502
CaiI	CAGNNNCTG	1 cut(s)	2935
CciI	TCATGA	2 cut(s)	1654, 1933
CfoI	GCGC	1 cut(s)	1540
Cfr10I	RCCGGY	2 cut(s)	1554, 2672
Cfr13I	GGNCC	8 cut(s)	373, 834, 882, 1257, 2029, 2183, 2515, 2690
ClaI	ATCGAT	1 cut(s)	1086
CsiI	ACCWGGT	1 cut(s)	2529
Csp6I	GTAC	5 cut(s)	522, 972, 1054, 1850, 2082
CviQI	GTAC	5 cut(s)	522, 972, 1054, 1850, 2082
DdeI	CTNAG	7 cut(s)	410, 488, 509, 686, 1296, 2361, 2883
DraI	TTTAAA	3 cut(s)	858, 1365, 1549
DraIII	CACNNNGTG	1 cut(s)	2336
EaeI	YGGCCR	2 cut(s)	747, 2412
Eam1104I	CTCTTC	4 cut(s)	837, 995, 1703, 2458
EarI	CTCTTC	4 cut(s)	837, 995, 1703, 2458
EciI	GGCGGA	2 cut(s)	1060, 2034
Ecl136II	GAGCTC	1 cut(s)	1302
Eco130I	CCWWGG	5 cut(s)	837, 1280, 1606, 2014, 2382
Eco24I	GRGCYC	3 cut(s)	291, 1275, 1304
Eco31I	GGTCTC	2 cut(s)	636, 2104
Eco47I	GGWCC	7 cut(s)	373, 834, 882, 2029, 2183, 2515, 2690
Eco53kI	GAGCTC	1 cut(s)	1302
Eco57I	CTGAAG	5 cut(s)	180, 399, 2045, 2540, 2737
Eco72I	CACGTG	1 cut(s)	1792
Eco88I	CYCGRG	1 cut(s)	2888
Eco91I	GGTNACC	1 cut(s)	1472
EcoICRI	GAGCTC	1 cut(s)	1302
EcoO109I	RGGNCCY	3 cut(s)	373, 2183, 2515
EcoO65I	GGTNACC	1 cut(s)	1472
EcoRII	CCWGG	4 cut(s)	910, 1143, 1309, 2529
EcoT14I	CCWWGG	5 cut(s)	837, 1280, 1606, 2014, 2382
EcoT22I	ATGCAT	2 cut(s)	2608, 2655
EcoT38I	GRGCYC	3 cut(s)	291, 1275, 1304
ErhI	CCWWGG	5 cut(s)	837, 1280, 1606, 2014, 2382
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 2652, 2684
FaqI	GGGAC	1 cut(s)	386
FauI	CCCGC	2 cut(s)	1282, 2798
FblI	GTMKAC	2 cut(s)	57, 1179
FokI	GGATG	4 cut(s)	356, 1671, 1772, 1796
FriOI	GRGCYC	3 cut(s)	291, 1275, 1304
FspBI	CTAG	5 cut(s)	581, 1376, 1635, 2160, 2426
GlaI	GCGC	1 cut(s)	1539
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	5 cut(s)	749, 1038, 1259, 1830, 2414
HapII	CCGG	7 cut(s)	264, 1042, 1057, 1074, 1252, 1555, 2673
HhaI	GCGC	1 cut(s)	1540
Hin6I	GCGC	1 cut(s)	1538
HinP1I	GCGC	1 cut(s)	1538
HindIII	AAGCTT	4 cut(s)	799, 852, 1430, 2522
HinfI	GANTC	7 cut(s)	140, 875, 1067, 1160, 1946, 2858, 2986
HpaII	CCGG	7 cut(s)	264, 1042, 1057, 1074, 1252, 1555, 2673
HphI	GGTGA	9 cut(s)	613, 1220, 1484, 1762, 1775, 2240, 2419, 2450, 2687
Hpy166II	GTNNAC	6 cut(s)	58, 890, 1180, 1333, 1586, 1682
Hpy188III	TCNNGA	8 cut(s)	48, 755, 812, 1523, 1655, 1871, 1934, 2518
Hpy8I	GTNNAC	6 cut(s)	58, 890, 1180, 1333, 1586, 1682
HpyCH4IV	ACGT	3 cut(s)	1588, 1791, 1981
HpyF10VI	GCNNNNNNNGC	9 cut(s)	100, 122, 260, 484, 1241, 2056, 2102, 2105, 2420
HpyF3I	CTNAG	7 cut(s)	410, 488, 509, 686, 1296, 2361, 2883
HpySE526I	ACGT	3 cut(s)	1588, 1791, 1981
HspAI	GCGC	1 cut(s)	1538
KflI	GGGWCCC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	525
KroI	GCCGGC	1 cut(s)	1554
KroNI	GCCGGC	1 cut(s)	1556
LmnI	GCTCC	5 cut(s)	383, 484, 1282, 1529, 1608
MabI	ACCWGGT	1 cut(s)	2529
MaeI	CTAG	5 cut(s)	581, 1376, 1635, 2160, 2426
MaeII	ACGT	3 cut(s)	1588, 1791, 1981
MaeIII	GTNAC	5 cut(s)	1472, 2143, 2324, 2438, 3001
MbiI	CCGCTC	1 cut(s)	1277
MfeI	CAATTG	2 cut(s)	2430, 2555
MflI	RGATCY	1 cut(s)	2542
MhlI	GDGCHC	5 cut(s)	291, 797, 1275, 1304, 1373
MlsI	TGGCCA	1 cut(s)	2414
MluNI	TGGCCA	1 cut(s)	2414
MlyI	GAGTC	2 cut(s)	1169, 2867
MmeI	TCCRAC	2 cut(s)	477, 2151
Mox20I	TGGCCA	1 cut(s)	2414
Mph1103I	ATGCAT	2 cut(s)	2608, 2655
MroNI	GCCGGC	1 cut(s)	1554
MroXI	GAANNNNTTC	2 cut(s)	1422, 1770
MscI	TGGCCA	1 cut(s)	2414
MslI	CAYNNNNRTG	4 cut(s)	435, 437, 2337, 2349
Msp20I	TGGCCA	1 cut(s)	2414
MspA1I	CMGCKG	1 cut(s)	2207
MspCI	CTTAAG	1 cut(s)	1778
MspI	CCGG	7 cut(s)	264, 1042, 1057, 1074, 1252, 1555, 2673
MspR9I	CCNGG	6 cut(s)	912, 1058, 1145, 1252, 1311, 2531
MunI	CAATTG	2 cut(s)	2430, 2555
MvaI	CCWGG	4 cut(s)	912, 1145, 1311, 2531
MwoI	GCNNNNNNNGC	9 cut(s)	100, 122, 260, 484, 1241, 2056, 2102, 2105, 2420
NaeI	GCCGGC	1 cut(s)	1556
NciI	CCSGG	2 cut(s)	1058, 1252
NgoMIV	GCCGGC	1 cut(s)	1554
NheI	GCTAGC	1 cut(s)	1634
NlaIV	GGNNCC	7 cut(s)	374, 375, 523, 540, 769, 1531, 1990
NmuCI	GTSAC	3 cut(s)	1472, 2438, 3001
NsiI	ATGCAT	2 cut(s)	2608, 2655
NspI	RCATGY	1 cut(s)	1921
NspV	TTCGAA	2 cut(s)	451, 2819
OliI	CACNNNNGTG	1 cut(s)	2337
PaeR7I	CTCGAG	1 cut(s)	2888
PagI	TCATGA	2 cut(s)	1654, 1933
PaqCI	CACCTGC	1 cut(s)	1012
PasI	CCCWGGG	1 cut(s)	911
PcsI	WCGNNNNNNNCGW	2 cut(s)	1164, 1173
PdiI	GCCGGC	1 cut(s)	1556
PdmI	GAANNNNTTC	2 cut(s)	1422, 1770
PfeI	GAWTC	5 cut(s)	140, 875, 1067, 1946, 2986
PflMI	CCANNNNNTGG	1 cut(s)	1189
PfoI	TCCNGGA	1 cut(s)	1309
Ple19I	CGATCG	1 cut(s)	1086
PleI	GAGTC	2 cut(s)	1168, 2866
PmaCI	CACGTG	1 cut(s)	1792
PmlI	CACGTG	1 cut(s)	1792
PpsI	GAGTC	2 cut(s)	1168, 2866
Ppu21I	YACGTR	2 cut(s)	1792, 1982
PpuMI	RGGWCCY	3 cut(s)	373, 2183, 2515
PshAI	GACNNNNGTC	1 cut(s)	1792
Psp124BI	GAGCTC	1 cut(s)	1304
Psp5II	RGGWCCY	3 cut(s)	373, 2183, 2515
Psp6I	CCWGG	4 cut(s)	910, 1143, 1309, 2529
PspCI	CACGTG	1 cut(s)	1792
PspEI	GGTNACC	1 cut(s)	1472
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	4 cut(s)	910, 1143, 1309, 2529
PspN4I	GGNNCC	7 cut(s)	374, 375, 523, 540, 769, 1531, 1990
PspPI	GGNCC	8 cut(s)	373, 834, 882, 1257, 2029, 2183, 2515, 2690
PspPPI	RGGWCCY	3 cut(s)	373, 2183, 2515
PspXI	VCTCGAGB	1 cut(s)	2888
PstI	CTGCAG	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	2935
PsuI	RGATCY	1 cut(s)	2542
PvuI	CGATCG	1 cut(s)	1086
PvuII	CAGCTG	1 cut(s)	2207
RsaI	GTAC	5 cut(s)	523, 973, 1055, 1851, 2083
RsaNI	GTAC	5 cut(s)	522, 972, 1054, 1850, 2082
RseI	CAYNNNNRTG	4 cut(s)	435, 437, 2337, 2349
SacI	GAGCTC	1 cut(s)	1304
Sau96I	GGNCC	8 cut(s)	373, 834, 882, 1257, 2029, 2183, 2515, 2690
ScaI	AGTACT	1 cut(s)	973
SchI	GAGTC	2 cut(s)	1169, 2867
ScrFI	CCNGG	6 cut(s)	912, 1058, 1145, 1252, 1311, 2531
SduI	GDGCHC	5 cut(s)	291, 797, 1275, 1304, 1373
SexAI	ACCWGGT	1 cut(s)	2529
SfcI	CTRYAG	3 cut(s)	658, 975, 2907
Sfr274I	CTCGAG	1 cut(s)	2888
SfuI	TTCGAA	2 cut(s)	451, 2819
SinI	GGWCC	7 cut(s)	373, 834, 882, 2029, 2183, 2515, 2690
SlaI	CTCGAG	1 cut(s)	2888
SmiMI	CAYNNNNRTG	4 cut(s)	435, 437, 2337, 2349
SmlI	CTYRAG	5 cut(s)	282, 986, 1778, 1871, 2888
SmoI	CTYRAG	5 cut(s)	282, 986, 1778, 1871, 2888
SsiI	CCGC	6 cut(s)	464, 1071, 1275, 2019, 2791, 2849
SspMI	CTAG	5 cut(s)	581, 1376, 1635, 2160, 2426
SstI	GAGCTC	1 cut(s)	1304
StyD4I	CCNGG	6 cut(s)	910, 1056, 1143, 1250, 1309, 2529
StyI	CCWWGG	5 cut(s)	837, 1280, 1606, 2014, 2382
TaiI	ACGT	3 cut(s)	1591, 1794, 1984
TaqI	TCGA	7 cut(s)	451, 1082, 1086, 1158, 2819, 2866, 2889
TatI	WGTACW	2 cut(s)	971, 1849
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	5 cut(s)	140, 875, 1067, 1946, 2986
TscAI	CASTG	4 cut(s)	328, 694, 1714, 2339
TseFI	GTSAC	3 cut(s)	1472, 2438, 3001
Tsp45I	GTSAC	3 cut(s)	1472, 2438, 3001
TspGWI	ACGGA	4 cut(s)	152, 835, 1165, 1587
TspRI	CASTG	4 cut(s)	328, 694, 1714, 2339
Van91I	CCANNNNNTGG	1 cut(s)	1189
Vha464I	CTTAAG	1 cut(s)	1778
VpaK11BI	GGWCC	7 cut(s)	373, 834, 882, 2029, 2183, 2515, 2690
XapI	RAATTY	6 cut(s)	920, 1077, 1207, 1319, 1903, 1929
XceI	RCATGY	1 cut(s)	1921
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1744, 1873
XhoI	CTCGAG	1 cut(s)	2888
XmiI	GTMKAC	2 cut(s)	57, 1179
XmnI	GAANNNNTTC	2 cut(s)	1422, 1770
XspI	CTAG	5 cut(s)	581, 1376, 1635, 2160, 2426
ZrmI	AGTACT	1 cut(s)	973
Zsp2I	ATGCAT	2 cut(s)	2608, 2655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.