Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

72222814 .. 72224403

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0604100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGGAATTCAAACCGATGCAGCTATCAATCCTGGGAACAGGTACATCAGCAGGTGTAGGATTTGCTATCCAATCATCAACTGTGCTAAAAATTGTCCCTCAGTTGATCCAATTCGGCAAAGTTGTTCGAGCTGGTTTGAATGTGGATATAGCTCCAGACCTGATTGCAAATCAACTCAATGTTCGTTATGGAGCTCTTATTTTACAGGTCCCTAAAAATAGTGTTGCGGCGAAGGCTGGCCTAGCTACTTCCTACCACAAGGGGATTTGCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

92

Amino Acids

9.58

Weight (kDa)

9.81

Isoelectric Point (pI)

14.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	2 cut(s)	230, 273
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	13, 142
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	5 cut(s)	25, 134, 155, 197, 248
AluI	AGCT	5 cut(s)	25, 134, 155, 197, 248
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	2 cut(s)	23, 231
BlsI	GCNGC	2 cut(s)	24, 232
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	2 cut(s)	83, 197
BsmFI	GGGAC	2 cut(s)	83, 197
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	230, 273
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 245
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	45
CviJI	RGCY	7 cut(s)	25, 134, 155, 197, 239, 243, 248
CviKI_1	RGCY	7 cut(s)	25, 134, 155, 197, 239, 243, 248
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	199
FaiI	YATR	2 cut(s)	152, 192
FaqI	GGGAC	2 cut(s)	83, 197
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	23, 231
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	23, 231
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	23, 231
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	22, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 245
HpyF3I	CTNAG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	160, 194
LpnPI	CCDG	9 cut(s)	20, 27, 39, 47, 120, 171, 176, 194, 225
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	245
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	8, 93, 113
MnlI	CCTC	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	236, 245
NdeII	GATC	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	24, 232
PpuMI	RGGWCCY	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	199
SatI	GCNGC	2 cut(s)	23, 231
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	9 cut(s)	27, 46, 58, 136, 157, 165, 199, 213, 250
SfaNI	GCATC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	8, 93, 113
SsiI	CCGC	2 cut(s)	230, 273
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	130
TasI	AATT	3 cut(s)	8, 93, 113
TauI	GCSGC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.