Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

36167972 .. 36172580

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTCAATCTTTTTACTGGTCCGTGAATTTCAGGCCTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAAAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAAACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCCTGAAGGAGCCTATGCGCTGATTTTTAAAAGCCGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCGTTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAATTGGTTCATCTTAAGGTGCCCTATTGCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

6.71

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	222
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	9, 77, 351, 407
AluBI	AGCT	2 cut(s)	109, 134
AluI	AGCT	2 cut(s)	109, 134
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	161, 439, 452
AsuNHI	GCTAGC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	2 cut(s)	50, 465
BanI	GGYRCC	1 cut(s)	460
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	53, 312
BfrI	CTTAAG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	208, 462
BmsI	GCATC	2 cut(s)	205, 379
BmtI	GCTAGC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	24, 384
Bse3DI	GCAATG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	3 cut(s)	196, 361, 442
BseMI	GCAATG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	24, 384
BseSI	GKGCMC	2 cut(s)	50, 465
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	232
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	50, 465
BspANI	GGCC	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	208, 462
BspOI	GCTAGC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	460
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	24, 384
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	111, 233, 313
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	196, 361, 442
BstHHI	GCGC	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	149
BstSLI	GKGCMC	2 cut(s)	50, 465
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	196, 361, 442
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	111, 233, 313
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	22
CviAII	CATG	3 cut(s)	62, 182, 332
CviJI	RGCY	6 cut(s)	5, 38, 109, 134, 209, 231
CviKI_1	RGCY	6 cut(s)	5, 38, 109, 134, 209, 231
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	65, 185, 335
FaiI	YATR	6 cut(s)	63, 120, 183, 191, 213, 333
FatI	CATG	3 cut(s)	61, 181, 331
FokI	GGATG	3 cut(s)	183, 348, 449
FspBI	CTAG	2 cut(s)	53, 312
GlaI	GCGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	65, 185, 335
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	107
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	3 cut(s)	161, 439, 452
Hpy166II	GTNNAC	2 cut(s)	263, 359
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	200, 332
Hpy8I	GTNNAC	2 cut(s)	263, 359
HpyAV	CCTTC	3 cut(s)	134, 140, 197
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	181, 326, 392
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	65, 185, 335
HspAI	GCGC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	206, 285
LpnPI	CCDG	5 cut(s)	5, 20, 213, 245, 397
LweI	GCATC	2 cut(s)	205, 379
MaeI	CTAG	2 cut(s)	53, 312
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	50, 465
MluCI	AATT	3 cut(s)	29, 340, 443
MnlI	CCTC	3 cut(s)	178, 186, 427
MroNI	GCCGGC	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	4 cut(s)	41, 225, 300, 456
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	232
NaeI	GCCGGC	1 cut(s)	233
NgoMIV	GCCGGC	1 cut(s)	231
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	65, 185, 335
NlaIV	GGNNCC	2 cut(s)	208, 462
NmuCI	GTSAC	1 cut(s)	149
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	208, 462
PspPI	GGNCC	1 cut(s)	22
SaqAI	TTAA	4 cut(s)	41, 225, 300, 456
Sau96I	GGNCC	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	50, 465
SetI	ASST	8 cut(s)	74, 111, 136, 151, 189, 268, 423, 462
SfaNI	GCATC	2 cut(s)	205, 379
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	29, 340, 443
SseBI	AGGCCT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	53, 312
StuI	AGGCCT	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	268
TasI	AATT	3 cut(s)	29, 340, 443
Tru1I	TTAA	4 cut(s)	41, 225, 300, 456
Tru9I	TTAA	4 cut(s)	41, 225, 300, 456
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	318, 320, 440, 463
TspGWI	ACGGA	2 cut(s)	14, 264
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	2 cut(s)	53, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.