Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

308988 .. 314313

Gene Structure 5326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGCAATGCGAAAAGACAATACCACCCTTGAGCTTTGGCCTCTCTCAATCTTCTAGATCACGCATTGTGTCAGAGGGAAACATCGAGTCGCTCGTCAAATCCGTCTACCAAGAGGTGGCTGAAACAGACCTAAATTTGAAGCAATGTTTCTCTCACCATGCTGGAATAGCACATACCCGGTGGGCCACTCATGGAGAGCCCGCTCCAAGGAACAGCCACCCTCAGAGCTCTGATCCTGGAAATGAATTTTTGGTCGTTCACAATGGGGTCATTACTAATTACGAGGCTTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCCGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCGTTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTCGTTCATCTTAAGGATGGACACGTGTCAATCCTAAAGTTTGATAAAGAAAAGCATGGTGGCCTTTCAAAAGTTGCATCAGTACAACGAGCATTGTCCATTCTTGAGATGGAGGTTGAACAAATAAATAAGGGAAATTTTGAACACTACATGCAGAAAGAAATTCATGAGCAGCCTGAATCTCTAACTACCACAATGAGGGGTAGGCTTTTACGTGGTGGTTCCTGCAAAGCCAAGACTGTTCTCCTTGGCGGACTGAAGGACCACCTTAAAACAATTAGGCGAAGCAGGCGAATTGTTTTCATTGGCTGTGGTACAAGCTACAATGCTGCTTTAGCTGCGAGACCTATCTTGGAAGAACTTTCAGGTATCCCTGTTACAATGGAAATTGCTAGTGATCTGTTGGATCGGCAAGGACCTATTTACAGAGAAGATACAGCTGTGTTTGTCAGTCAATCTGGTGAAACAGCAGATACTTTGAGTGCATTGGAATATGCTTTAGAAAATGGTGCATTATGTGTTGGCATAACAAATACCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGGTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGGCCATGCTTGCCCTAGCAATTGGAGGTGACACAATTTCAAATCAAGCAAGAAGAGAGGCTATAATTGACGGTTTATTTGACCTGCCAAACAAAGTCAGAGAGGTCCTGAAGCTTGACCAGGTAATGAAGGATCTTGCAAAACAATTGATAGCAGAGCAATCACTTCTTGTTTTTGGGAGAGGATACAACTATGCATCGGCTTTGGAGGGTGCTTTGAAGGTAAAGGAAGTAGCACTCATGCATAGTGAAGGAATACTTGCCGGTGAAATGAAACATGGACCTTTGGCTTTAGTTGATGAAAATCTCCCAACTTTTGTGATTGCTACCCGTGATGCTTGCTTCAGTAAGCAGCAATCAGTTATTCAGCAGCTTCATGCCCGCAAAGGTCGTCTGATTGTAATGTGTTCGAAAGGAGATGCTGCATCTGTTTGCCCTGCGGAATGGGAGTCTTGTCGAGTGATTGAAGTTCCTCAGCTCGAGGATTGTCTTCAACCTGTAGTTAATATAGTTCCCTTGCAGTTGCTGGCATACCATCTCACAGTTTTAAGAGGTTTTAATGTGGATCAGCCTCGGAATCTTGCAAAGAGTGTGACAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

646

Amino Acids

70.66

Weight (kDa)

6.42

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	51 - 167	4e-14	Glutamine amidotransferase domain
GATase_7	PF13537	70 - 163	1.1e-09	Glutamine amidotransferase domain
SIS	PF01380	324 - 452	1.9e-34	SIS domain
SIS	PF01380	495 - 628	8.4e-19	SIS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1428
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	4 cut(s)	201, 945, 1717, 1775
AclWI	GGATC	4 cut(s)	227, 1107, 1476, 1908
AcoI	YGGCCR	1 cut(s)	1338
AcsI	RAATTY	4 cut(s)	133, 245, 829, 855
AcuI	CTGAAG	3 cut(s)	971, 1466, 1663
AcvI	CACGTG	1 cut(s)	718
AdeI	CACNNNGTG	1 cut(s)	1262
AfaI	GTAC	2 cut(s)	777, 1009
AfiI	CCNNNNNNNGG	3 cut(s)	115, 207, 891
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	2 cut(s)	715, 717
AjnI	CCWGG	2 cut(s)	235, 1455
AleI	CACNNNNGTG	1 cut(s)	1263
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	1030
AlwI	GGATC	4 cut(s)	227, 1107, 1476, 1908
AlwNI	CAGNNNCTG	1 cut(s)	1861
Ama87I	CYCGRG	1 cut(s)	1814
AoxI	GGCC	4 cut(s)	37, 183, 754, 1338
ApeKI	GCWGC	6 cut(s)	865, 1022, 1031, 1687, 1705, 1757
ApoI	RAATTY	4 cut(s)	133, 245, 829, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	1397, 1429
Asp700I	GAANNNNTTC	2 cut(s)	348, 696
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	5 cut(s)	183, 955, 1109, 1441, 1616
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	8 cut(s)	146, 410, 688, 701, 1166, 1345, 1376, 1613
AsuII	TTCGAA	1 cut(s)	1745
AsuNHI	GCTAGC	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	1814
AvaII	GGWCC	4 cut(s)	955, 1109, 1441, 1616
BaeGI	GKGCMC	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	1119, 1152
BalI	TGGCCA	1 cut(s)	1340
BanII	GRGCYC	2 cut(s)	201, 230
BbrPI	CACGTG	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	1817
Bbv12I	GWGCWC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	1809
BbvI	GCAGC	6 cut(s)	877, 1009, 1018, 1699, 1717, 1744
BccI	CCATC	5 cut(s)	680, 704, 796, 1330, 1878
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	237, 1457
BciVI	GTATCC	2 cut(s)	1073, 1514
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	1030
BfaI	CTAG	5 cut(s)	54, 302, 561, 1086, 1352
BfmI	CTRYAG	1 cut(s)	1833
BfrI	CTTAAG	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	1428
BfuI	GTATCC	2 cut(s)	1073, 1514
BisI	GCNGC	6 cut(s)	866, 1023, 1032, 1688, 1706, 1758
BlsI	GCNGC	6 cut(s)	867, 1024, 1033, 1689, 1707, 1759
Bme1390I	CCNGG	3 cut(s)	178, 237, 1457
Bme18I	GGWCC	4 cut(s)	955, 1109, 1441, 1616
BmeT110I	CYCGRG	1 cut(s)	1814
BmgT120I	GGNCC	5 cut(s)	183, 955, 1109, 1441, 1616
BmiI	GGNNCC	2 cut(s)	457, 916
BmrFI	CCNGG	3 cut(s)	178, 237, 1457
BmrI	ACTGGG	1 cut(s)	1930
BmsI	GCATC	7 cut(s)	454, 628, 779, 1541, 1660, 1744, 1769
BmtI	GCTAGC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	1930
BoxI	GACNNNNGTC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	1817
Bpu10I	CCTNAGC	1 cut(s)	1809
Bpu14I	TTCGAA	1 cut(s)	1745
BpuEI	CTTGAG	2 cut(s)	49, 818
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	2 cut(s)	718, 908
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	5 cut(s)	206, 532, 940, 1308, 1907
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 207, 891
Bse118I	RCCGGY	2 cut(s)	480, 1598
Bse1I	ACTGG	2 cut(s)	633, 1936
Bse3DI	GCAATG	3 cut(s)	11, 149, 571
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	2 cut(s)	237, 1457
BseDI	CCNNGG	5 cut(s)	206, 532, 940, 1308, 1907
BseGI	GGATG	3 cut(s)	610, 691, 715
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	3 cut(s)	115, 207, 891
BseMI	GCAATG	3 cut(s)	11, 149, 571
BseMII	CTCAG	3 cut(s)	236, 1278, 1823
BseNI	ACTGG	2 cut(s)	633, 1936
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	6 cut(s)	877, 1009, 1018, 1699, 1717, 1744
BshFI	GGCC	4 cut(s)	39, 185, 756, 1340
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	1814
BsiSI	CCGG	3 cut(s)	178, 481, 1599
BslI	CCNNNNNNNGG	3 cut(s)	115, 207, 891
BsmAI	GTCTC	1 cut(s)	1030
BsnI	GGCC	4 cut(s)	39, 185, 756, 1340
Bso31I	GGTCTC	1 cut(s)	1030
BsoBI	CYCGRG	1 cut(s)	1814
Bsp119I	TTCGAA	1 cut(s)	1745
Bsp1286I	GDGCHC	3 cut(s)	201, 230, 299
Bsp143I	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
BspACI	CCGC	4 cut(s)	201, 945, 1717, 1775
BspANI	GGCC	4 cut(s)	39, 185, 756, 1340
BspCNI	CTCAG	3 cut(s)	235, 1279, 1822
BspHI	TCATGA	2 cut(s)	580, 859
BspLI	GGNNCC	2 cut(s)	457, 916
BspMI	ACCTGC	1 cut(s)	1428
BspOI	GCTAGC	1 cut(s)	564
BspPI	GGATC	4 cut(s)	227, 1107, 1476, 1908
BspT104I	TTCGAA	1 cut(s)	1745
BspTI	CTTAAG	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	1030
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	3 cut(s)	11, 149, 571
BsrFI	RCCGGY	2 cut(s)	480, 1598
BsrI	ACTGG	2 cut(s)	633, 1936
BssAI	RCCGGY	2 cut(s)	480, 1598
BssECI	CCNNGG	5 cut(s)	206, 532, 940, 1308, 1907
BssMI	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
BssT1I	CCWWGG	4 cut(s)	206, 532, 940, 1308
Bst2UI	CCWGG	2 cut(s)	237, 1457
Bst4CI	ACNGT	5 cut(s)	934, 1231, 1262, 1409, 1879
Bst6I	CTCTTC	2 cut(s)	629, 1384
BstAFI	CTTAAG	1 cut(s)	704
BstBAI	YACGTR	2 cut(s)	718, 908
BstBI	TTCGAA	1 cut(s)	1745
BstDEI	CTNAG	3 cut(s)	222, 1287, 1809
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	610, 691, 715
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	6 cut(s)	59, 235, 1093, 1102, 1471, 1903
BstMAI	GTCTC	1 cut(s)	1030
BstMBI	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 982, 1028, 1031, 1346
BstNI	CCWGG	2 cut(s)	237, 1457
BstNSI	RCATGY	1 cut(s)	847
BstPAI	GACNNNNGTC	1 cut(s)	718
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	176, 235, 1455
BstSFI	CTRYAG	1 cut(s)	1833
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	6 cut(s)	877, 1009, 1018, 1699, 1717, 1744
BstV2I	GAAGAC	1 cut(s)	1817
BstX2I	RGATCY	1 cut(s)	1468
BstYI	RGATCY	1 cut(s)	1468
BsuI	GTATCC	2 cut(s)	1073, 1514
BsuRI	GGCC	4 cut(s)	39, 185, 756, 1340
BtsCI	GGATG	3 cut(s)	610, 691, 715
BtsIMutI	CAGTG	2 cut(s)	640, 1258
BveI	ACCTGC	1 cut(s)	1428
CaiI	CAGNNNCTG	1 cut(s)	1861
CciI	TCATGA	2 cut(s)	580, 859
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	2 cut(s)	480, 1598
Cfr13I	GGNCC	5 cut(s)	183, 955, 1109, 1441, 1616
CsiI	ACCWGGT	1 cut(s)	1455
Csp6I	GTAC	2 cut(s)	776, 1008
CviQI	GTAC	2 cut(s)	776, 1008
DdeI	CTNAG	3 cut(s)	222, 1287, 1809
DpnI	GATC	6 cut(s)	58, 234, 1092, 1101, 1470, 1902
DpnII	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
DraI	TTTAAA	2 cut(s)	291, 475
DraIII	CACNNNGTG	1 cut(s)	1262
EaeI	YGGCCR	1 cut(s)	1338
Eam1104I	CTCTTC	2 cut(s)	629, 1384
EarI	CTCTTC	2 cut(s)	629, 1384
EciI	GGCGGA	1 cut(s)	960
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	4 cut(s)	206, 532, 940, 1308
Eco24I	GRGCYC	2 cut(s)	201, 230
Eco31I	GGTCTC	1 cut(s)	1030
Eco47I	GGWCC	4 cut(s)	955, 1109, 1441, 1616
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	3 cut(s)	971, 1466, 1663
Eco72I	CACGTG	1 cut(s)	718
Eco88I	CYCGRG	1 cut(s)	1814
Eco91I	GGTNACC	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	2 cut(s)	1109, 1441
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	235, 1455
EcoT14I	CCWWGG	4 cut(s)	206, 532, 940, 1308
EcoT22I	ATGCAT	2 cut(s)	1534, 1581
EcoT38I	GRGCYC	2 cut(s)	201, 230
ErhI	CCWWGG	4 cut(s)	206, 532, 940, 1308
FalI	AAGNNNNNCTT	2 cut(s)	1578, 1610
FauI	CCCGC	2 cut(s)	208, 1724
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	866, 1023, 1032, 1688, 1706, 1758
FokI	GGATG	3 cut(s)	597, 698, 722
FriOI	GRGCYC	2 cut(s)	201, 230
Fsp4HI	GCNGC	6 cut(s)	866, 1023, 1032, 1688, 1706, 1758
FspBI	CTAG	5 cut(s)	54, 302, 561, 1086, 1352
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	6 cut(s)	866, 1023, 1032, 1688, 1706, 1758
HaeIII	GGCC	4 cut(s)	39, 185, 756, 1340
HapII	CCGG	3 cut(s)	178, 481, 1599
HhaI	GCGC	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HindIII	AAGCTT	2 cut(s)	356, 1448
HinfI	GANTC	4 cut(s)	86, 872, 1784, 1912
HpaII	CCGG	3 cut(s)	178, 481, 1599
HphI	GGTGA	8 cut(s)	146, 410, 688, 701, 1166, 1345, 1376, 1613
Hpy166II	GTNNAC	4 cut(s)	106, 259, 512, 608
Hpy188I	TCNGA	7 cut(s)	73, 225, 232, 331, 1436, 1731, 1911
Hpy188III	TCNNGA	6 cut(s)	54, 449, 581, 797, 860, 1444
Hpy8I	GTNNAC	4 cut(s)	106, 259, 512, 608
HpyAV	CCTTC	7 cut(s)	383, 389, 446, 946, 1459, 1549, 1580
HpyCH4III	ACNGT	5 cut(s)	934, 1231, 1262, 1409, 1879
HpyCH4IV	ACGT	3 cut(s)	514, 717, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 982, 1028, 1031, 1346
HpyF3I	CTNAG	3 cut(s)	222, 1287, 1809
HpySE526I	ACGT	3 cut(s)	514, 717, 907
HspAI	GCGC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Kzo9I	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
LmnI	GCTCC	3 cut(s)	208, 455, 534
Lsp1109I	GCAGC	6 cut(s)	877, 1009, 1018, 1699, 1717, 1744
LweI	GCATC	7 cut(s)	454, 628, 779, 1541, 1660, 1744, 1769
MabI	ACCWGGT	1 cut(s)	1455
MaeI	CTAG	5 cut(s)	54, 302, 561, 1086, 1352
MaeII	ACGT	3 cut(s)	514, 717, 907
MaeIII	GTNAC	5 cut(s)	398, 1069, 1250, 1364, 1927
MalI	GATC	6 cut(s)	58, 234, 1092, 1101, 1470, 1902
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
MboII	GAAGA	6 cut(s)	42, 616, 1061, 1136, 1401, 1817
MfeI	CAATTG	2 cut(s)	1356, 1481
MflI	RGATCY	1 cut(s)	1468
MhlI	GDGCHC	3 cut(s)	201, 230, 299
MlsI	TGGCCA	1 cut(s)	1340
MluNI	TGGCCA	1 cut(s)	1340
MlyI	GAGTC	2 cut(s)	95, 1793
MmeI	TCCRAC	1 cut(s)	1077
Mox20I	TGGCCA	1 cut(s)	1340
Mph1103I	ATGCAT	2 cut(s)	1534, 1581
MroNI	GCCGGC	1 cut(s)	480
MroXI	GAANNNNTTC	2 cut(s)	348, 696
MscI	TGGCCA	1 cut(s)	1340
MseI	TTAA	8 cut(s)	290, 474, 549, 705, 963, 1839, 1883, 1893
MslI	CAYNNNNRTG	2 cut(s)	1263, 1275
Msp20I	TGGCCA	1 cut(s)	1340
MspA1I	CMGCKG	1 cut(s)	1133
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	3 cut(s)	178, 481, 1599
MspR9I	CCNGG	3 cut(s)	178, 237, 1457
MunI	CAATTG	2 cut(s)	1356, 1481
MvaI	CCWGG	2 cut(s)	237, 1457
MwoI	GCNNNNNNNGC	5 cut(s)	167, 982, 1028, 1031, 1346
NaeI	GCCGGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
NgoMIV	GCCGGC	1 cut(s)	480
NheI	GCTAGC	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	457, 916
NmuCI	GTSAC	3 cut(s)	398, 1364, 1927
NsiI	ATGCAT	2 cut(s)	1534, 1581
NspI	RCATGY	1 cut(s)	847
NspV	TTCGAA	1 cut(s)	1745
OliI	CACNNNNGTG	1 cut(s)	1263
PaeR7I	CTCGAG	1 cut(s)	1814
PagI	TCATGA	2 cut(s)	580, 859
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 99
PdiI	GCCGGC	1 cut(s)	482
PdmI	GAANNNNTTC	2 cut(s)	348, 696
PfeI	GAWTC	2 cut(s)	872, 1912
PflMI	CCANNNNNTGG	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	6 cut(s)	867, 1024, 1033, 1689, 1707, 1759
PleI	GAGTC	2 cut(s)	94, 1792
PmaCI	CACGTG	1 cut(s)	718
PmlI	CACGTG	1 cut(s)	718
PpsI	GAGTC	2 cut(s)	94, 1792
Ppu21I	YACGTR	2 cut(s)	718, 908
PpuMI	RGGWCCY	2 cut(s)	1109, 1441
PshAI	GACNNNNGTC	1 cut(s)	718
Psp124BI	GAGCTC	1 cut(s)	230
Psp5II	RGGWCCY	2 cut(s)	1109, 1441
Psp6I	CCWGG	2 cut(s)	235, 1455
PspCI	CACGTG	1 cut(s)	718
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	235, 1455
PspN4I	GGNNCC	2 cut(s)	457, 916
PspPI	GGNCC	5 cut(s)	183, 955, 1109, 1441, 1616
PspPPI	RGGWCCY	2 cut(s)	1109, 1441
PspXI	VCTCGAGB	1 cut(s)	1814
PstNI	CAGNNNCTG	1 cut(s)	1861
PsuI	RGATCY	1 cut(s)	1468
PvuII	CAGCTG	1 cut(s)	1133
RsaI	GTAC	2 cut(s)	777, 1009
RsaNI	GTAC	2 cut(s)	776, 1008
RseI	CAYNNNNRTG	2 cut(s)	1263, 1275
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	8 cut(s)	290, 474, 549, 705, 963, 1839, 1883, 1893
SatI	GCNGC	6 cut(s)	866, 1023, 1032, 1688, 1706, 1758
Sau3AI	GATC	6 cut(s)	56, 232, 1090, 1099, 1468, 1900
Sau96I	GGNCC	5 cut(s)	183, 955, 1109, 1441, 1616
SchI	GAGTC	2 cut(s)	95, 1793
ScrFI	CCNGG	3 cut(s)	178, 237, 1457
SduI	GDGCHC	3 cut(s)	201, 230, 299
SexAI	ACCWGGT	1 cut(s)	1455
SfaNI	GCATC	7 cut(s)	454, 628, 779, 1541, 1660, 1744, 1769
SfcI	CTRYAG	1 cut(s)	1833
Sfr274I	CTCGAG	1 cut(s)	1814
SfuI	TTCGAA	1 cut(s)	1745
SinI	GGWCC	4 cut(s)	955, 1109, 1441, 1616
SlaI	CTCGAG	1 cut(s)	1814
SmiMI	CAYNNNNRTG	2 cut(s)	1263, 1275
SmlI	CTYRAG	4 cut(s)	28, 704, 797, 1814
SmoI	CTYRAG	4 cut(s)	28, 704, 797, 1814
SsiI	CCGC	4 cut(s)	201, 945, 1717, 1775
SspMI	CTAG	5 cut(s)	54, 302, 561, 1086, 1352
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	176, 235, 1455
StyI	CCWWGG	4 cut(s)	206, 532, 940, 1308
TaaI	ACNGT	5 cut(s)	934, 1231, 1262, 1409, 1879
TaiI	ACGT	3 cut(s)	517, 720, 910
TaqI	TCGA	4 cut(s)	84, 1745, 1792, 1815
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	872, 1912
Tru1I	TTAA	8 cut(s)	290, 474, 549, 705, 963, 1839, 1883, 1893
Tru9I	TTAA	8 cut(s)	290, 474, 549, 705, 963, 1839, 1883, 1893
TscAI	CASTG	2 cut(s)	640, 1265
TseFI	GTSAC	3 cut(s)	398, 1364, 1927
TseI	GCWGC	6 cut(s)	865, 1022, 1031, 1687, 1705, 1757
Tsp45I	GTSAC	3 cut(s)	398, 1364, 1927
TspGWI	ACGGA	2 cut(s)	91, 513
TspRI	CASTG	2 cut(s)	640, 1265
Van91I	CCANNNNNTGG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	4 cut(s)	955, 1109, 1441, 1616
XapI	RAATTY	4 cut(s)	133, 245, 829, 855
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	2 cut(s)	670, 799
XhoI	CTCGAG	1 cut(s)	1814
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	2 cut(s)	348, 696
XspI	CTAG	5 cut(s)	54, 302, 561, 1086, 1352
Zsp2I	ATGCAT	2 cut(s)	1534, 1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.