Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

1091054 .. 1091527

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1003000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCGGAAACTGGCAGAGTGTATTCATGGTATGATTGTGAAAAGTGGTCTGAATGAAAATGTCACAATTGCAACCGGACTGCTGGATTTGTATGCAAAGTTGGGGAGACTAACTTACTCGCTTAAGATTTTCGGGGAGGTAAATAATCCGGACAAAGGAGCTTGGACTGCGATGCTTGCAGCCTATGCTGTGCATGGTTATGGGAGAGAAGCAATGGAGCTCTTTGAAAGCATGCTTAAAGAAGGTGGGGAGCCTGATCACGTCACCTTCACACATTTGCAAAGTGATTGTAGCCACTCGGGGCTTGTCGAGGTGGGGAAGAATGACTTCAACATTATGCCTCAAGTTTATGGAATTGAGCCTAGGTTGGATCACTATTCATGCATGGTTGGTCTTCTGGGACGCTCTGGGCTTCTAAATGATGCTTACGAGCTGATTAGACGTATGCCAATGGAGCCAAACTCTGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

158

Amino Acids

17.35

Weight (kDa)

5.64

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	50 - 93	1.8e-09	PPR repeat family
PPR	PF01535	54 - 82	4.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	155, 464
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	227, 331
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	3 cut(s)	161, 220, 433
AluI	AGCT	3 cut(s)	161, 220, 433
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	298
BmgBI	CACGTC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	252, 456
BmsI	GCATC	2 cut(s)	162, 412
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	74, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 464
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	155, 464
BseMI	GCAATG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	75, 149
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	155, 464
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	256, 370
BspACI	CCGC	1 cut(s)	4
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	252, 456
BspPI	GGATC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	256, 370
BssT1I	CCWWGG	1 cut(s)	362
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	177, 233
BstKTI	GATC	2 cut(s)	259, 373
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	256, 370
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 454
BstNSI	RCATGY	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	177, 233
CseI	GACGC	1 cut(s)	411
CviAII	CATG	5 cut(s)	26, 194, 232, 381, 385
DpnI	GATC	2 cut(s)	258, 372
DpnII	GATC	2 cut(s)	256, 370
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	5 cut(s)	29, 197, 235, 384, 388
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	5 cut(s)	25, 193, 231, 380, 384
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	75, 149
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	29, 197, 235, 384, 388
HpaII	CCGG	2 cut(s)	75, 149
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	149, 465
HpyAV	CCTTC	2 cut(s)	236, 277
HpyCH4IV	ACGT	2 cut(s)	261, 442
HpyCH4V	TGCA	6 cut(s)	71, 95, 179, 193, 280, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 454
HpySE526I	ACGT	2 cut(s)	261, 442
Hsp92II	CATG	5 cut(s)	29, 197, 235, 384, 388
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 370
LmnI	GCTCC	4 cut(s)	158, 217, 250, 454
LpnPI	CCDG	7 cut(s)	68, 88, 162, 267, 383, 393, 450
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	162, 412
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	261, 442
MaeIII	GTNAC	2 cut(s)	61, 262
MalI	GATC	2 cut(s)	258, 372
MboI	GATC	2 cut(s)	256, 370
MboII	GAAGA	2 cut(s)	331, 386
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	66, 354
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	130, 304, 351
Mph1103I	ATGCAT	1 cut(s)	386
MroI	TCCGGA	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	123, 237
MslI	CAYNNNNRTG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	75, 149
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 185, 454
NdeII	GATC	2 cut(s)	256, 370
NlaIII	CATG	5 cut(s)	29, 197, 235, 384, 388
NlaIV	GGNNCC	2 cut(s)	252, 456
NmuCI	GTSAC	2 cut(s)	61, 262
NsiI	ATGCAT	1 cut(s)	386
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	252, 456
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	123, 237
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	256, 370
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	162, 412
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	122, 342
SmoI	CTYRAG	2 cut(s)	122, 342
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	2 cut(s)	66, 354
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	362
TaiI	ACGT	2 cut(s)	264, 445
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	66, 354
Tru1I	TTAA	2 cut(s)	123, 237
Tru9I	TTAA	2 cut(s)	123, 237
TseFI	GTSAC	2 cut(s)	61, 262
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	61, 262
TspDTI	ATGAA	3 cut(s)	14, 69, 369
Van91I	CCANNNNNTGG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	122
XceI	RCATGY	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.