Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56284 .. 56760

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggagatctttgaaagcatggttaggaaaggtgtgcagcctgatcacgtcaccttcactcacttgttaagtgcttgtagccattcaggactaattaaggaagggaggaattacttcaacattatgtctgaagtttatggagtagagcctaggttggatcactattcatgcatggttgatcttctgggtcgctctggacttctgaatgatgcttacgagctgattaaacgaatgccaatggagccaaactctggtgtatggggggctcttttcagttcttgtagggtttatggtaatattgaacttgggaaggcagttgcagagagattatttgctttagagccatctgattccagaaattttatcatgctatcaaatatgtactctgcagctggtttatggagggatgcttcgaaggtgagggtgatcagtctcacctcaagtcagagaggatatatgccaagttggaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

158

Amino Acids

17.85

Weight (kDa)

8.45

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	14, 118, 302
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	2 cut(s)	220, 392
AluI	AGCT	2 cut(s)	220, 392
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	37, 389
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	113
AspA2I	CCTAGG	1 cut(s)	149
AsuHPI	GGTGA	4 cut(s)	43, 427, 430, 436
AsuII	TTCGAA	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	49, 401
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	2 cut(s)	43, 426
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	38, 390
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	39, 391
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	199, 397
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	49, 401
BsgI	GTGCAG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	6, 43, 157, 178, 426
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	5 cut(s)	6, 43, 157, 178, 426
BssT1I	CCWWGG	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	5 cut(s)	9, 46, 160, 181, 429
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	5 cut(s)	6, 43, 157, 178, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	49, 401
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	4 cut(s)	19, 168, 172, 367
CviJI	RGCY	8 cut(s)	40, 81, 148, 220, 244, 266, 343, 392
CviKI_1	RGCY	8 cut(s)	40, 81, 148, 220, 244, 266, 343, 392
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	5 cut(s)	8, 45, 159, 180, 428
DpnII	GATC	5 cut(s)	6, 43, 157, 178, 426
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	22, 171, 175, 370
FatI	CATG	4 cut(s)	18, 167, 171, 366
FbaI	TGATCA	2 cut(s)	43, 426
Fnu4HI	GCNGC	2 cut(s)	38, 390
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	38, 390
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	38, 390
Hin1II	CATG	4 cut(s)	22, 171, 175, 370
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	4 cut(s)	43, 427, 430, 436
Hpy188I	TCNGA	4 cut(s)	130, 204, 349, 447
Hpy188III	TCNNGA	3 cut(s)	87, 195, 354
HpyAV	CCTTC	4 cut(s)	64, 95, 304, 409
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	37, 171, 320, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	22, 171, 175, 370
Ksp22I	TGATCA	2 cut(s)	43, 426
Kzo9I	GATC	5 cut(s)	6, 43, 157, 178, 426
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	54, 72, 170, 180, 237, 367, 378
Lsp1109I	GCAGC	2 cut(s)	49, 401
LweI	GCATC	2 cut(s)	199, 397
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	5 cut(s)	8, 45, 159, 180, 428
MboI	GATC	5 cut(s)	6, 43, 157, 178, 426
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	93, 109, 358
MmeI	TCCRAC	2 cut(s)	135, 446
MnlI	CCTC	5 cut(s)	99, 396, 414, 443, 448
Mph1103I	ATGCAT	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	68, 96, 225
MspA1I	CMGCKG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	5 cut(s)	6, 43, 157, 178, 426
NlaIII	CATG	4 cut(s)	22, 171, 175, 370
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	413
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	39, 391
PspN4I	GGNNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	68, 96, 225
SatI	GCNGC	2 cut(s)	38, 390
Sau3AI	GATC	5 cut(s)	6, 43, 157, 178, 426
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	8 cut(s)	34, 51, 56, 155, 222, 394, 420, 440
SfaNI	GCATC	2 cut(s)	199, 397
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	93, 109, 358
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	93, 109, 358
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	68, 96, 225
Tru9I	TTAA	3 cut(s)	68, 96, 225
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	37, 389
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	358
XmaJI	CCTAGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.