Rh6AG009100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
1041514 .. 1043205
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG009100.1

Sequence Viewer

Length: 1692 bp
ATGATAAGACTGAGTACTTGTTCATCGTCGTCTCTGCTCTACTTTCACTTAAAATTCAGAACCAGATGTTTACTCTTCTCCCATCAAATGCAAAACCCACAATGTATCTACAAGCTCTTCACCCAGAAAACATTTCACAATGCACTTCTTCCTCACTCATCTTTCCAATTTCACACACATTCAAACTCGGACATTCTTCTTTCCGCTCTGATTTCTGCTATAAGCTCCTGCCCTTCTGTCTCCTATGGCCGTGCTATTCACGCATGTGTAATCAAGTCTTACAATTATAGTGATGGGTTCATTGGCGATCAGCTGGTTTCGTGTTATGCCAAGATGGGCTTTGCTGAAGATGCACTGACCCTGTTCGATGAAATGCCCAAGAAGGACTTGGTCTCCTGGAATTCTTTGATTTCCGGGTTTTCGCGAAGAGGGTATGTGGATAAATGCTTGAGTGCGTTTCTTAGGATGAAGTTTGAAATGGGAATAGAACCCAATGATGTTACGCTTATATCTCTAGTTTCAGCTTGTGCTGGCAGTGGAGCTGTTGATGAAGGCATGTACATTCCTGGACTTGCACTGAAATTGGGTGTGCTGTGGGAACCAAAGCTTGTTAATTCTCTGATTAATCTGTATGGGAAGTTGGGCTATTTGGATGCAGTTTGTCGATTAGTTGAGCCTATGCCGATACAGAATGTAGTGTCATGGAATTTATTAATGATAGCAATTTACGCTCAAAATGGATCTGCAGCGGAGGGGTTGAATTGTTTTAATCTCATGAGAAGGGCTGGAGTTTATCCTGATGATGGTACTCTTGTGTCTTTGCTTCAAGTTTGCGAGAATTTAGGTTTAGGGAATCTAGCACAGGGCGTCCATGGTTTAATTATCAAGTGTGGTCGTAGTGCAAATATCAGAGTTGCAATGGGAGTTCTAGATTTGTATACGAAGTTGGGGCGATTAGATTATTCACTTAAGGTTTTCAAGGAGGTAATTGATCCGGATAAAGTAGCTTGGACTGCAATGCTTGCAGGTTATGCTACGCATGGGTATGGACGAGAAGCTATGGAGATCTTTGAAAGCATGGTTAGGAAAGGTGTGCAGCCTGATCACGTCACCTTCACTCACTTGTTAAGTGCTTGTAGCCATTCAGGACTAATTAAGGAAGGGAGGAATTACTTCAACATTACGTCTGAAGTTTATGGAGTAGAGCCTAGGTTGGATCACTATTCATGCATGGTTGATCTTCTGGGTCGCTCTGGACTTCTGAATGATGCTTACGAGCTGATTAAACGAATGCCAATGGAGCCAAACTCTGGTGTATGGGGGGCTCTTTTCAGTTCTTGTAGGGTTTATGGTAATATTGAACTTGGGAAGGCAGTTGCAGAGAGATTATTTGCTTTAGAGCCATCTGATTCCAGAAATTTTATCATGCTATCAAATATGTACTCTGCAGCTGGTTTATGGAGGGATGCTTCAAAGGTGAGGGCTTTGATGAAGGAGAAAGGTCTCGTGAGAACCCCCGGATGCAGTTTTATTGAATATGGAAATAAAATTCATCGCTTTGTTGTGGGTGATCAGTCTCACCCCGAGTCAGATAGGATATATGCCAAGTTGGAAGAAGTGATTGAAAAGATCCGGAAGGCTGGATTTGTGTCTCAAACTGAATTATTCTACATGATGTTGAAGAGGCAGTGA

Protein Analysis

563

Amino Acids

62.79

Weight (kDa)

8.46

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 129 - 177 1.3e-08 PPR repeat family
PPR PF01535 131 - 157 2.4e-06 PPR repeat
PPR_3 PF13812 330 - 379 1.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 332 - 380 1.8e-13 PPR repeat family
PPR PF01535 335 - 365 4.1e-07 PPR repeat
E_motif PF20431 450 - 512 2.5e-17 E motif
Eplus_motif PF20430 517 - 544 2e-09 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1016
AccB7I CCANNNNNTGG 1 cut(s) 1310
AccBSI CCGCTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 938
AccII CGCG 1 cut(s) 424
AccIII TCCGGA 2 cut(s) 994, 1632
AciI CCGC 2 cut(s) 204, 749
AclWI GGATC 4 cut(s) 748, 986, 1224, 1624
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 6 cut(s) 53, 400, 706, 838, 1417, 1548
AcuI CTGAAG 2 cut(s) 366, 1209
AcyI GRCGYC 1 cut(s) 867
AfaI GTAC 4 cut(s) 16, 560, 808, 1442
AfiI CCNNNNNNNGG 2 cut(s) 803, 1310
AflII CTTAAG 1 cut(s) 968
AjiI CACGTC 1 cut(s) 1108
AjnI CCWGG 2 cut(s) 395, 565
AleI CACNNNNGTG 1 cut(s) 264
Alw26I GTCTC 6 cut(s) 36, 244, 397, 1508, 1581, 1656
AlwI GGATC 4 cut(s) 748, 986, 1224, 1624
Ama87I CYCGRG 1 cut(s) 1583
Aor13HI TCCGGA 2 cut(s) 994, 1632
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 746, 1096, 1448
ApoI RAATTY 6 cut(s) 53, 400, 706, 838, 1417, 1548
AseI ATTAAT 2 cut(s) 624, 713
Asp700I GAANNNNTTC 1 cut(s) 1172
AspA2I CCTAGG 1 cut(s) 1208
AsuC2I CCSGG 2 cut(s) 415, 1518
AsuHPI GGTGA 5 cut(s) 112, 1102, 1489, 1571, 1580
AvaI CYCGRG 1 cut(s) 1583
AvrII CCTAGG 1 cut(s) 1208
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BanII GRGCYC 1 cut(s) 1327
BauI CACGAG 1 cut(s) 1505
BbvI GCAGC 3 cut(s) 758, 1108, 1460
BccI CCATC 5 cut(s) 90, 287, 328, 797, 1411
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 397, 567
BclI TGATCA 2 cut(s) 1102, 1570
BcnI CCSGG 2 cut(s) 415, 1518
BcoDI GTCTC 6 cut(s) 36, 244, 397, 1508, 1581, 1656
BfaI CTAG 4 cut(s) 515, 857, 929, 1209
BfmI CTRYAG 2 cut(s) 744, 1446
BfrI CTTAAG 1 cut(s) 968
BfuAI ACCTGC 1 cut(s) 1016
BglII AGATCT 1 cut(s) 1065
BisI GCNGC 3 cut(s) 747, 1097, 1449
BlnI CCTAGG 1 cut(s) 1208
BlsI GCNGC 3 cut(s) 748, 1098, 1450
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 4 cut(s) 397, 415, 567, 1518
BmeT110I CYCGRG 1 cut(s) 1583
BmgBI CACGTC 1 cut(s) 1108
BmiI GGNNCC 2 cut(s) 600, 1302
BmrFI CCNGG 4 cut(s) 397, 415, 567, 1518
BmsI GCATC 5 cut(s) 340, 643, 1258, 1456, 1511
BplI GAGNNNNNCTC 2 cut(s) 1292, 1324
BpmI CTGGAG 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 415, 1518
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 397, 1508
BsaJI CCNNGG 3 cut(s) 871, 1208, 1516
BsaWI WCCGGW 2 cut(s) 994, 1632
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 1310
Bse3DI GCAATG 2 cut(s) 924, 1023
BseAI TCCGGA 2 cut(s) 994, 1632
BseBI CCWGG 2 cut(s) 397, 567
BseDI CCNNGG 3 cut(s) 871, 1208, 1516
BseGI GGATG 4 cut(s) 471, 658, 1471, 1526
BseLI CCNNNNNNNGG 2 cut(s) 803, 1310
BseMI GCAATG 2 cut(s) 924, 1023
BseXI GCAGC 3 cut(s) 758, 1108, 1460
BsgI GTGCAG 1 cut(s) 1115
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 1583
BsiSI CCGG 4 cut(s) 414, 995, 1518, 1633
BslI CCNNNNNNNGG 2 cut(s) 803, 1310
BsmAI GTCTC 6 cut(s) 36, 244, 397, 1508, 1581, 1656
BsmBI CGTCTC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 1296
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 2 cut(s) 397, 1508
BsoBI CYCGRG 1 cut(s) 1583
Bsp1286I GDGCHC 1 cut(s) 1327
Bsp13I TCCGGA 2 cut(s) 994, 1632
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
Bsp19I CCATGG 1 cut(s) 871
Bsp68I TCGCGA 1 cut(s) 424
BspACI CCGC 2 cut(s) 204, 749
BspANI GGCC 1 cut(s) 249
BspEI TCCGGA 2 cut(s) 994, 1632
BspFNI CGCG 1 cut(s) 424
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 600, 1302
BspMAI CTGCAG 2 cut(s) 748, 1450
BspMI ACCTGC 1 cut(s) 1016
BspPI GGATC 4 cut(s) 748, 986, 1224, 1624
BspQI GCTCTTC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 968
BspTNI GGTCTC 2 cut(s) 397, 1508
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 924, 1023
BsrGI TGTACA 1 cut(s) 558
BssECI CCNNGG 3 cut(s) 871, 1208, 1516
BssMI GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
BssNAI GTATAC 1 cut(s) 939
BssNI GRCGYC 1 cut(s) 867
BssSI CACGAG 1 cut(s) 1505
BssT1I CCWWGG 2 cut(s) 871, 1208
Bst1107I GTATAC 1 cut(s) 939
Bst2BI CACGAG 1 cut(s) 1505
Bst2UI CCWGG 2 cut(s) 397, 567
Bst6I CTCTTC 4 cut(s) 80, 122, 421, 1676
BstACI GRCGYC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 968
BstAPI GCANNNNNTGC 2 cut(s) 1022, 1031
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 532, 1023
BstDEI CTNAG 2 cut(s) 11, 461
BstDSI CCRYGG 1 cut(s) 871
BstF5I GGATG 4 cut(s) 471, 658, 1471, 1526
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 9 cut(s) 310, 743, 994, 1068, 1105, 1219, 1240, 1573, 1632
BstMAI GTCTC 6 cut(s) 36, 244, 397, 1508, 1581, 1656
BstMBI GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
BstMWI GCNNNNNNNGC 7 cut(s) 260, 350, 728, 1013, 1022, 1031, 1300
BstNI CCWGG 2 cut(s) 397, 567
BstNSI RCATGY 2 cut(s) 267, 559
BstSCI CCNGG 4 cut(s) 395, 413, 565, 1516
BstSFI CTRYAG 2 cut(s) 744, 1446
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 758, 1108, 1460
BstX2I RGATCY 3 cut(s) 740, 1065, 1629
BstYI RGATCY 3 cut(s) 740, 1065, 1629
BstZ17I GTATAC 1 cut(s) 939
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 871
BtgZI GCGATG 1 cut(s) 1538
BtrI CACGTC 1 cut(s) 1108
BtsCI GGATG 4 cut(s) 471, 658, 1471, 1526
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 353, 541, 575
BtuMI TCGCGA 1 cut(s) 424
BveI ACCTGC 1 cut(s) 1016
Cac8I GCNNGC 2 cut(s) 532, 1023
CciI TCATGA 1 cut(s) 774
CseI GACGC 1 cut(s) 856
Csp6I GTAC 4 cut(s) 15, 559, 807, 1441
CviQI GTAC 4 cut(s) 15, 559, 807, 1441
DdeI CTNAG 2 cut(s) 11, 461
DpnI GATC 9 cut(s) 309, 742, 993, 1067, 1104, 1218, 1239, 1572, 1631
DpnII GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 4 cut(s) 80, 122, 421, 1676
EarI CTCTTC 4 cut(s) 80, 122, 421, 1676
Eco130I CCWWGG 2 cut(s) 871, 1208
Eco24I GRGCYC 1 cut(s) 1327
Eco31I GGTCTC 2 cut(s) 397, 1508
Eco57I CTGAAG 2 cut(s) 366, 1209
Eco88I CYCGRG 1 cut(s) 1583
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 395, 565
EcoT14I CCWWGG 2 cut(s) 871, 1208
EcoT22I ATGCAT 1 cut(s) 1232
EcoT38I GRGCYC 1 cut(s) 1327
ErhI CCWWGG 2 cut(s) 871, 1208
Esp3I CGTCTC 1 cut(s) 36
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 371, 403
FbaI TGATCA 2 cut(s) 1102, 1570
FblI GTMKAC 1 cut(s) 938
Fnu4HI GCNGC 3 cut(s) 747, 1097, 1449
FokI GGATG 4 cut(s) 478, 665, 1478, 1533
FriOI GRGCYC 1 cut(s) 1327
Fsp4HI GCNGC 3 cut(s) 747, 1097, 1449
FspBI CTAG 4 cut(s) 515, 857, 929, 1209
GluI GCNGC 3 cut(s) 747, 1097, 1449
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 1 cut(s) 249
HapII CCGG 4 cut(s) 414, 995, 1518, 1633
HgaI GACGC 1 cut(s) 856
Hin1I GRCGYC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 853, 1409, 1586
HpaII CCGG 4 cut(s) 414, 995, 1518, 1633
HphI GGTGA 5 cut(s) 112, 1102, 1489, 1571, 1580
Hpy166II GTNNAC 2 cut(s) 71, 939
Hpy188I TCNGA 9 cut(s) 59, 190, 210, 621, 911, 1189, 1263, 1408, 1591
Hpy8I GTNNAC 2 cut(s) 71, 939
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 9 cut(s) 243, 376, 545, 774, 1123, 1154, 1363, 1486, 1630
HpyCH4IV ACGT 2 cut(s) 1107, 1184
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 350, 728, 1013, 1022, 1031, 1300
HpyF3I CTNAG 2 cut(s) 11, 461
HpySE526I ACGT 2 cut(s) 1107, 1184
Hsp92I GRCGYC 1 cut(s) 867
Kpn2I TCCGGA 2 cut(s) 994, 1632
Ksp22I TGATCA 2 cut(s) 1102, 1570
Kzo9I GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 230, 539, 1300
Lsp1109I GCAGC 3 cut(s) 758, 1108, 1460
LweI GCATC 5 cut(s) 340, 643, 1258, 1456, 1511
MaeI CTAG 4 cut(s) 515, 857, 929, 1209
MaeII ACGT 2 cut(s) 1107, 1184
MaeIII GTNAC 2 cut(s) 499, 1108
MalI GATC 9 cut(s) 309, 742, 993, 1067, 1104, 1218, 1239, 1572, 1631
MbiI CCGCTC 1 cut(s) 206
MboI GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
MboII GAAGA 8 cut(s) 67, 109, 140, 188, 359, 438, 1232, 1625
MflI RGATCY 3 cut(s) 740, 1065, 1629
MhlI GDGCHC 1 cut(s) 1327
MlyI GAGTC 1 cut(s) 1595
MmeI TCCRAC 2 cut(s) 1194, 1590
MnlI CCTC 8 cut(s) 162, 422, 745, 976, 1158, 1455, 1473, 1677
Mph1103I ATGCAT 1 cut(s) 1232
MroI TCCGGA 2 cut(s) 994, 1632
MroXI GAANNNNTTC 1 cut(s) 1172
MslI CAYNNNNRTG 2 cut(s) 264, 1044
MspA1I CMGCKG 3 cut(s) 313, 749, 1451
MspCI CTTAAG 1 cut(s) 968
MspI CCGG 4 cut(s) 414, 995, 1518, 1633
MspR9I CCNGG 4 cut(s) 397, 415, 567, 1518
Mva1269I GAATGC 1 cut(s) 1296
MvaI CCWGG 2 cut(s) 397, 567
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 7 cut(s) 260, 350, 728, 1013, 1022, 1031, 1300
NciI CCSGG 2 cut(s) 415, 1518
NcoI CCATGG 1 cut(s) 871
NdeII GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
NlaIV GGNNCC 2 cut(s) 600, 1302
NmuCI GTSAC 1 cut(s) 1108
NruI TCGCGA 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 1232
NspI RCATGY 2 cut(s) 267, 559
OliI CACNNNNGTG 1 cut(s) 264
PagI TCATGA 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 122
PctI GAATGC 1 cut(s) 1296
PdmI GAANNNNTTC 1 cut(s) 1172
PfeI GAWTC 2 cut(s) 853, 1409
PflFI GACNNNGTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 1310
PfoI TCCNGGA 2 cut(s) 395, 565
PkrI GCNGC 3 cut(s) 748, 1098, 1450
PleI GAGTC 1 cut(s) 1594
PpsI GAGTC 1 cut(s) 1594
PshBI ATTAAT 2 cut(s) 624, 713
Psp6I CCWGG 2 cut(s) 395, 565
PspGI CCWGG 2 cut(s) 395, 565
PspN4I GGNNCC 2 cut(s) 600, 1302
PstI CTGCAG 2 cut(s) 748, 1450
PsuI RGATCY 3 cut(s) 740, 1065, 1629
PsyI GACNNNGTC 1 cut(s) 389
PvuII CAGCTG 2 cut(s) 313, 1451
RruI TCGCGA 1 cut(s) 424
RsaI GTAC 4 cut(s) 16, 560, 808, 1442
RsaNI GTAC 4 cut(s) 15, 559, 807, 1441
RseI CAYNNNNRTG 2 cut(s) 264, 1044
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 3 cut(s) 747, 1097, 1449
Sau3AI GATC 9 cut(s) 307, 740, 991, 1065, 1102, 1216, 1237, 1570, 1629
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 1595
ScrFI CCNGG 4 cut(s) 397, 415, 567, 1518
SduI GDGCHC 1 cut(s) 1327
SfaNI GCATC 5 cut(s) 340, 643, 1258, 1456, 1511
SfcI CTRYAG 2 cut(s) 744, 1446
SmiMI CAYNNNNRTG 2 cut(s) 264, 1044
SmlI CTYRAG 2 cut(s) 448, 968
SmoI CTYRAG 2 cut(s) 448, 968
SsiI CCGC 2 cut(s) 204, 749
SspI AATATT 1 cut(s) 1357
SspMI CTAG 4 cut(s) 515, 857, 929, 1209
StyD4I CCNGG 4 cut(s) 395, 413, 565, 1516
StyI CCWWGG 2 cut(s) 871, 1208
TaiI ACGT 2 cut(s) 1110, 1187
TaqI TCGA 2 cut(s) 366, 664
TatI WGTACW 3 cut(s) 14, 558, 1440
TfiI GAWTC 2 cut(s) 853, 1409
TscAI CASTG 3 cut(s) 360, 541, 582
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 3 cut(s) 746, 1096, 1448
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 8 cut(s) 12, 289, 384, 482, 564, 1215, 1505, 1541
TspRI CASTG 3 cut(s) 360, 541, 582
Tth111I GACNNNGTC 1 cut(s) 389
Van91I CCANNNNNTGG 1 cut(s) 1310
Vha464I CTTAAG 1 cut(s) 968
VspI ATTAAT 2 cut(s) 624, 713
XapI RAATTY 6 cut(s) 53, 400, 706, 838, 1417, 1548
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 2 cut(s) 267, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmaJI CCTAGG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 1172
XspI CTAG 4 cut(s) 515, 857, 929, 1209
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.