Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

1029480 .. 1030031

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATAAGATTACGTTCTCGTTCATCGTCGTCTCTGCTCTACTTTCACTTAAAATTCAGAACCAGATGTTTATTCTTCTCCCATCAAATTCAAAACCCACAATGTATCTCCAAGCTCCTTACCCAGAAAACATTTCACAATGCACTTCTTCCTCACTCATCTTTCCAATTTCGCACACATTCAAACTCGGACATTCTTCTTTCCGCTCTAATTTCTGCTATAAGCTCCTGCCCTTCTGTCTCCTATGGCCGTGCCATTCACGCATGTGTAATCAAGTCTTACAATTACAGTGATGGGTTCATTGGCGATCAGCTGGTTTCGTGTCATGCCAAGATGGGTTTTGCTAAAAATGCACTGAAGCTGTTTGATGAAATGCCCAACAAGGACTTGGTCTCCTGGAATTCTTTGATTTCCGGGTTTTCGCGAAGAGGGTATGTGGATAAATGCTTGAGTGCGTTTCTTAGGATGAAGTTTGAAATGGGAAAAGAACCCAATGAGGTTACGCTTATATCTGTAGTTTCAGCTTGTGCTAGCAGTGGAGCTGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

183

Amino Acids

20.47

Weight (kDa)

9.48

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	129 - 177	9.4e-08	PPR repeat family
PPR	PF01535	131 - 157	5.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	424
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	53, 87, 400
AcuI	CTGAAG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	92, 183, 476
AjnI	CCWGG	1 cut(s)	395
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	6 cut(s)	115, 225, 313, 361, 524, 542
AluI	AGCT	6 cut(s)	115, 225, 313, 361, 524, 542
Alw26I	GTCTC	3 cut(s)	36, 244, 397
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	53, 87, 400
AsuC2I	CCSGG	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	530
BccI	CCATC	3 cut(s)	90, 287, 328
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	3 cut(s)	36, 244, 397
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	513
Bme1390I	CCNGG	2 cut(s)	397, 415
BmrFI	CCNGG	2 cut(s)	397, 415
BmtI	GCTAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
BseBI	CCWGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	414
BsmAI	GTCTC	3 cut(s)	36, 244, 397
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	307
Bsp68I	TCGCGA	1 cut(s)	424
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	206
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	3 cut(s)	36, 244, 397
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 350
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	395, 413
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	295, 353, 541
BtuMI	TCGCGA	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	532
CviAII	CATG	2 cut(s)	264, 326
CviJI	RGCY	7 cut(s)	115, 225, 249, 313, 361, 524, 542
CviKI_1	RGCY	7 cut(s)	115, 225, 249, 313, 361, 524, 542
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	267, 329
FaiI	YATR	6 cut(s)	221, 246, 265, 327, 435, 509
FatI	CATG	2 cut(s)	263, 325
FokI	GGATG	1 cut(s)	478
FspBI	CTAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	2 cut(s)	267, 329
HpaII	CCGG	1 cut(s)	414
Hpy188I	TCNGA	2 cut(s)	59, 190
Hpy188III	TCNNGA	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	143, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 350
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	267, 329
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	120, 230, 539
LpnPI	CCDG	7 cut(s)	76, 137, 241, 299, 382, 409, 427
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	67, 140, 188, 438
MluCI	AATT	6 cut(s)	53, 87, 167, 210, 283, 400
MnlI	CCTC	3 cut(s)	162, 422, 490
MseI	TTAA	2 cut(s)	50, 550
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	397, 415
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	260, 350
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	2 cut(s)	267, 329
NruI	TCGCGA	1 cut(s)	424
NspI	RCATGY	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	389
PfoI	TCCNGGA	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	50, 550
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	397, 415
SetI	ASST	8 cut(s)	16, 117, 227, 315, 363, 501, 526, 544
SfcI	CTRYAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	6 cut(s)	53, 87, 167, 210, 283, 400
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	395, 413
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	16
TasI	AATT	6 cut(s)	53, 87, 167, 210, 283, 400
Tru1I	TTAA	2 cut(s)	50, 550
Tru9I	TTAA	2 cut(s)	50, 550
TscAI	CASTG	3 cut(s)	295, 360, 541
TspDTI	ATGAA	4 cut(s)	12, 289, 384, 482
TspRI	CASTG	3 cut(s)	295, 360, 541
Tth111I	GACNNNGTC	1 cut(s)	389
XapI	RAATTY	3 cut(s)	53, 87, 400
XceI	RCATGY	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.