Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8188818.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 648

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8188818.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgccatttgaggctgatgttcgagtatggagtgcactacttgctgcatgtagggttcacaataatattgaacttggggaagaagtgtccaggaaagttcaagggctaggatctgaaggtactggaaatttggtcctcttatctaatatgtacagttctattgggagatgggatgatgcagcgcatgtcagaattaaacagaaggatcaaggccttaagaagagtccaggatgtagttgggtcgagattaatggggtgattcatggatttctcggtggagatcagtcccatcctgaatcggctcagatacatgaaaaattagaggaactgctagtagacatgaaaaggatgggatattgtacagaaaatagttttgttctccaagatgttgaggaagaggagaaagaaaggatcctcctttatcatagtgaaaaactagccattgcttatggaattcttcatctgagcccggggaaacccatttttgttactaaaaatctgcgggtctgtggtgattgccatgctgctataaagttcatctctcttgttacaaagagagagataaccgtaagagatgtgagtcggtttcatcatttcagtgatggaaattgcagttgtgcagacttttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

210

Amino Acids

23.58

Weight (kDa)

6.06

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	4 cut(s)	118, 213, 406, 419
AcsI	RAATTY	2 cut(s)	127, 453
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	3 cut(s)	121, 152, 361
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	71, 101
AjnI	CCWGG	2 cut(s)	89, 226
Alw21I	GWGCWC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	4 cut(s)	118, 213, 406, 419
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	44, 179, 524
ApoI	RAATTY	2 cut(s)	127, 453
AseI	ATTAAT	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	470, 471
AsuHPI	GGTGA	2 cut(s)	268, 524
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	31, 191, 511
BccI	CCATC	4 cut(s)	162, 297, 343, 596
BciT130I	CCWGG	2 cut(s)	91, 228
BcnI	CCSGG	2 cut(s)	470, 471
BfaI	CTAG	3 cut(s)	107, 332, 437
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	45, 180, 525
BlsI	GCNGC	3 cut(s)	46, 181, 526
Bme1390I	CCNGG	4 cut(s)	91, 228, 470, 471
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	4 cut(s)	91, 228, 470, 471
BmsI	GCATC	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	470, 471
BsaJI	CCNNGG	2 cut(s)	469, 470
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	91, 228
BseDI	CCNNGG	2 cut(s)	469, 470
BseGI	GGATG	4 cut(s)	178, 236, 289, 354
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	317, 455
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	31, 191, 511
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	37, 470
Bsp1407I	TGTACA	2 cut(s)	150, 359
Bsp143I	GATC	4 cut(s)	110, 205, 280, 411
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	316, 456
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	4 cut(s)	118, 213, 406, 419
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	441
BsrGI	TGTACA	2 cut(s)	150, 359
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	469, 470
BssMI	GATC	4 cut(s)	110, 205, 280, 411
Bst2UI	CCWGG	2 cut(s)	91, 228
Bst4CI	ACNGT	2 cut(s)	155, 568
Bst6I	CTCTTC	2 cut(s)	215, 390
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstAUI	TGTACA	2 cut(s)	150, 359
BstDEI	CTNAG	2 cut(s)	303, 464
BstF5I	GGATG	4 cut(s)	178, 236, 289, 354
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	4 cut(s)	113, 208, 283, 414
BstMBI	GATC	4 cut(s)	110, 205, 280, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	2 cut(s)	91, 228
BstNSI	RCATGY	2 cut(s)	51, 188
BstSCI	CCNGG	4 cut(s)	89, 226, 468, 469
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	31, 191, 511
BstX2I	RGATCY	2 cut(s)	110, 411
BstYI	RGATCY	2 cut(s)	110, 411
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	178, 236, 289, 354
BtsIMutI	CAGTG	1 cut(s)	604
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	133
Cfr9I	CCCGGG	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	120, 151, 360
CviAII	CATG	6 cut(s)	48, 185, 263, 311, 340, 521
CviJI	RGCY	6 cut(s)	14, 106, 213, 302, 440, 468
CviKI_1	RGCY	6 cut(s)	14, 106, 213, 302, 440, 468
CviQI	GTAC	3 cut(s)	120, 151, 360
DdeI	CTNAG	2 cut(s)	303, 464
DpnI	GATC	4 cut(s)	112, 207, 282, 413
DpnII	GATC	4 cut(s)	110, 205, 280, 411
Eam1104I	CTCTTC	2 cut(s)	215, 390
EarI	CTCTTC	2 cut(s)	215, 390
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	89, 226
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	6 cut(s)	51, 188, 266, 314, 343, 524
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	6 cut(s)	47, 184, 262, 310, 339, 520
FauI	CCCGC	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	45, 180, 525
FokI	GGATG	4 cut(s)	185, 243, 276, 361
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	45, 180, 525
FspBI	CTAG	3 cut(s)	107, 332, 437
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	45, 180, 525
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	6 cut(s)	51, 188, 266, 314, 343, 524
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	4 cut(s)	223, 259, 296, 580
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	268, 524
Hpy166II	GTNNAC	3 cut(s)	35, 58, 337
Hpy188I	TCNGA	4 cut(s)	115, 191, 306, 465
Hpy188III	TCNNGA	2 cut(s)	244, 293
Hpy8I	GTNNAC	3 cut(s)	35, 58, 337
HpyAV	CCTTC	2 cut(s)	110, 196
HpyCH4III	ACNGT	2 cut(s)	155, 568
HpyCH4V	TGCA	5 cut(s)	35, 47, 179, 612, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	303, 464
Hsp92II	CATG	6 cut(s)	51, 188, 266, 314, 343, 524
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	110, 205, 280, 411
LpnPI	CCDG	7 cut(s)	76, 103, 108, 213, 240, 306, 483
Lsp1109I	GCAGC	3 cut(s)	31, 191, 511
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	3 cut(s)	107, 332, 437
MaeIII	GTNAC	2 cut(s)	487, 547
MalI	GATC	4 cut(s)	112, 207, 282, 413
MboI	GATC	4 cut(s)	110, 205, 280, 411
MboII	GAAGA	4 cut(s)	92, 232, 407, 449
MflI	RGATCY	2 cut(s)	110, 411
MhlI	GDGCHC	2 cut(s)	37, 470
MluCI	AATT	5 cut(s)	127, 192, 317, 453, 607
MlyI	GAGTC	2 cut(s)	232, 589
MnlI	CCTC	6 cut(s)	4, 146, 316, 385, 391, 425
MseI	TTAA	3 cut(s)	195, 216, 249
MslI	CAYNNNNRTG	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	4 cut(s)	91, 228, 470, 471
MvaI	CCWGG	2 cut(s)	91, 228
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	470, 471
NdeII	GATC	4 cut(s)	110, 205, 280, 411
NlaIII	CATG	6 cut(s)	51, 188, 266, 314, 343, 524
NlaIV	GGNNCC	1 cut(s)	413
NspI	RCATGY	2 cut(s)	51, 188
PceI	AGGCCT	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	259, 296
PfoI	TCCNGGA	2 cut(s)	89, 226
PkrI	GCNGC	3 cut(s)	46, 181, 526
PleI	GAGTC	2 cut(s)	231, 588
PpsI	GAGTC	2 cut(s)	231, 588
PshBI	ATTAAT	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	89, 226
PspGI	CCWGG	2 cut(s)	89, 226
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	110, 411
RsaI	GTAC	3 cut(s)	121, 152, 361
RsaNI	GTAC	3 cut(s)	120, 151, 360
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	195, 216, 249
SatI	GCNGC	3 cut(s)	45, 180, 525
Sau3AI	GATC	4 cut(s)	110, 205, 280, 411
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	232, 589
ScrFI	CCNGG	4 cut(s)	91, 228, 470, 471
SduI	GDGCHC	2 cut(s)	37, 470
SetI	ASST	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	133
SmaI	CCCGGG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	127, 192, 317, 453, 607
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	502
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	107, 332, 437
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	4 cut(s)	89, 226, 468, 469
TaaI	ACNGT	2 cut(s)	155, 568
TaqI	TCGA	2 cut(s)	22, 243
TasI	AATT	5 cut(s)	127, 192, 317, 453, 607
TatI	WGTACW	2 cut(s)	150, 359
TfiI	GAWTC	2 cut(s)	259, 296
Tru1I	TTAA	3 cut(s)	195, 216, 249
Tru9I	TTAA	3 cut(s)	195, 216, 249
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	3 cut(s)	44, 179, 524
TspDTI	ATGAA	6 cut(s)	251, 327, 356, 449, 526, 578
TspMI	CCCGGG	1 cut(s)	469
TspRI	CASTG	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	127, 453
XceI	RCATGY	2 cut(s)	51, 188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XmaI	CCCGGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	3 cut(s)	107, 332, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.