Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011355.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Forward (+)

3731 .. 4394

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011355.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggagatctttgaaagcatggttaggaaaggtgtgcagcctgatcacgtcaccttcactcacttgttaagtgcttgtagccattcaggactaattaaggaagggaggaattacttcaacattatgtctgaagtttatggagtagagcctagttcttgtagggtttatggtaatattgaacttgggaaggcagttgcagagagattatttgctttagagccatctgattccagaaattttatcatgctatcaaatatgtactctgcagctggtttatggagggatgcttcaaacgtgagggctttgatgaaggagaaaggtctcgcgagaacccctggatgcagttttattgaatttggaaataaagttcattgctttgttgtgggtgatcagtctcaccccgagtcagagaggatatatgccaagttggaagaagtgattgaaaagatccggaaggctggatttgtgtctcgaactgaatttattctacatgatgttgaagaggcagtgaaagaagatatgatcagtaagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

178

Amino Acids

20.1

Weight (kDa)

6.09

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	450
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	3 cut(s)	235, 353, 479
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	7 cut(s)	14, 118, 179, 291, 353, 443, 500
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	334
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw26I	GTCTC	3 cut(s)	326, 399, 474
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	37, 266
ApoI	RAATTY	3 cut(s)	235, 353, 479
Asp700I	GAANNNNTTC	2 cut(s)	113, 483
AsuHPI	GGTGA	3 cut(s)	43, 389, 398
AvaI	CYCGRG	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	49, 278
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	3 cut(s)	43, 388, 522
BcoDI	GTCTC	3 cut(s)	326, 399, 474
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	38, 267
BlsI	GCNGC	2 cut(s)	39, 268
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	274, 329
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	289, 344
BseMI	GCAATG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	49, 278
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	451
BsmAI	GTCTC	3 cut(s)	326, 399, 474
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	401
Bsp13I	TCCGGA	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	6, 43, 388, 447, 522
Bsp68I	TCGCGA	1 cut(s)	326
BspEI	TCCGGA	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	5 cut(s)	6, 43, 388, 447, 522
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	289, 344
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	5 cut(s)	9, 46, 391, 450, 525
BstMAI	GTCTC	3 cut(s)	326, 399, 474
BstMBI	GATC	5 cut(s)	6, 43, 388, 447, 522
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	49, 278
BstX2I	RGATCY	2 cut(s)	6, 447
BstYI	RGATCY	2 cut(s)	6, 447
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	289, 344
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
BtuMI	TCGCGA	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	19, 244, 491
CviJI	RGCY	7 cut(s)	40, 81, 148, 220, 269, 302, 458
CviKI_1	RGCY	7 cut(s)	40, 81, 148, 220, 269, 302, 458
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	5 cut(s)	8, 45, 390, 449, 524
DpnII	GATC	5 cut(s)	6, 43, 388, 447, 522
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	22, 247, 494
FatI	CATG	3 cut(s)	18, 243, 490
FbaI	TGATCA	3 cut(s)	43, 388, 522
Fnu4HI	GCNGC	2 cut(s)	38, 267
FokI	GGATG	2 cut(s)	296, 351
Fsp4HI	GCNGC	2 cut(s)	38, 267
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	38, 267
HapII	CCGG	1 cut(s)	451
Hin1II	CATG	3 cut(s)	22, 247, 494
HinfI	GANTC	2 cut(s)	227, 404
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	3 cut(s)	43, 389, 398
Hpy188I	TCNGA	3 cut(s)	130, 226, 409
Hpy188III	TCNNGA	5 cut(s)	87, 231, 325, 451, 471
HpyAV	CCTTC	5 cut(s)	64, 95, 181, 304, 448
HpyCH4IV	ACGT	2 cut(s)	48, 294
HpyCH4V	TGCA	4 cut(s)	37, 197, 266, 342
HpySE526I	ACGT	2 cut(s)	48, 294
Hsp92II	CATG	3 cut(s)	22, 247, 494
Kpn2I	TCCGGA	1 cut(s)	450
Ksp22I	TGATCA	3 cut(s)	43, 388, 522
Kzo9I	GATC	5 cut(s)	6, 43, 388, 447, 522
LpnPI	CCDG	8 cut(s)	54, 72, 244, 255, 321, 348, 444, 464
Lsp1109I	GCAGC	2 cut(s)	49, 278
LweI	GCATC	2 cut(s)	274, 329
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	48, 294
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	5 cut(s)	8, 45, 390, 449, 524
MboI	GATC	5 cut(s)	6, 43, 388, 447, 522
MboII	GAAGA	3 cut(s)	443, 512, 527
MflI	RGATCY	2 cut(s)	6, 447
MluCI	AATT	5 cut(s)	93, 109, 235, 353, 479
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	99, 273, 291, 405, 496
MroI	TCCGGA	1 cut(s)	450
MroXI	GAANNNNTTC	2 cut(s)	113, 483
MseI	TTAA	2 cut(s)	68, 96
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	326
NdeII	GATC	5 cut(s)	6, 43, 388, 447, 522
NlaIII	CATG	3 cut(s)	22, 247, 494
NmuCI	GTSAC	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	326
PdmI	GAANNNNTTC	2 cut(s)	113, 483
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	39, 268
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	6, 447
PvuII	CAGCTG	1 cut(s)	269
RruI	TCGCGA	1 cut(s)	326
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	68, 96
SatI	GCNGC	2 cut(s)	38, 267
Sau3AI	GATC	5 cut(s)	6, 43, 388, 447, 522
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	6 cut(s)	34, 51, 56, 271, 297, 322
SfaNI	GCATC	2 cut(s)	274, 329
SfcI	CTRYAG	1 cut(s)	264
Sse9I	AATT	5 cut(s)	93, 109, 235, 353, 479
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	334
TaiI	ACGT	2 cut(s)	51, 297
TaqI	TCGA	1 cut(s)	472
TasI	AATT	5 cut(s)	93, 109, 235, 353, 479
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	68, 96
Tru9I	TTAA	2 cut(s)	68, 96
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	37, 266
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	323, 359
TspRI	CASTG	1 cut(s)	513
XapI	RAATTY	3 cut(s)	235, 353, 479
XmnI	GAANNNNTTC	2 cut(s)	113, 483
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.