Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

42881 .. 43213

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgggctttgctgaagatgcactgaagctgtttgatgaaatgcccaacaaggacttggtctcctggaattctttgatttctgggttttcgcgaagagggtatgtggataaatgcttgagtgcgtttcttaggatgaagtttgaaatgggaaaagaacccaatgaggttacgcttatatctgtagtttcagcttgtgctatcaggggagctgttgatgaaggcatgtacattcatggatttgcactgaaattgggtgtgctgtgggaaccaaagcttgttaattctctgattaatctgtatggaaagtcaggctatttggatgcagttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

110

Amino Acids

12.25

Weight (kDa)

5.77

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	33, 44
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	28, 191, 209, 274
AluI	AGCT	4 cut(s)	28, 191, 209, 274
Alw26I	GTCTC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	67
AseI	ATTAAT	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	7, 310
BpuEI	CTTGAG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	138, 325
Bsh1236I	CGCG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	225
Bsp68I	TCGCGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	138, 325
BstFNI	CGCG	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	138, 325
BtsIMutI	CAGTG	2 cut(s)	20, 242
BtuMI	TCGCGA	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	223, 233
CviJI	RGCY	6 cut(s)	6, 28, 191, 209, 274, 312
CviKI_1	RGCY	6 cut(s)	6, 28, 191, 209, 274, 312
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	33, 44
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	226, 236
FaiI	YATR	5 cut(s)	102, 176, 224, 234, 300
FatI	CATG	2 cut(s)	222, 232
FokI	GGATG	1 cut(s)	145
Hin1II	CATG	2 cut(s)	226, 236
HindIII	AAGCTT	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	20, 242, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	226, 236
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	49, 66, 76, 187, 294
LweI	GCATC	2 cut(s)	7, 310
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	26, 105
MluCI	AATT	3 cut(s)	67, 248, 280
MnlI	CCTC	2 cut(s)	89, 157
MseI	TTAA	2 cut(s)	279, 291
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	226, 236
NlaIV	GGNNCC	1 cut(s)	267
NruI	TCGCGA	1 cut(s)	91
NspI	RCATGY	1 cut(s)	226
PflFI	GACNNNGTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	56
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	279, 291
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	5 cut(s)	30, 168, 193, 211, 276
SfaNI	GCATC	2 cut(s)	7, 310
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	67, 248, 280
StyD4I	CCNGG	1 cut(s)	62
TasI	AATT	3 cut(s)	67, 248, 280
TatI	WGTACW	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	279, 291
Tru9I	TTAA	2 cut(s)	279, 291
TscAI	CASTG	2 cut(s)	27, 249
TspDTI	ATGAA	4 cut(s)	51, 149, 221, 231
TspRI	CASTG	2 cut(s)	27, 249
Tth111I	GACNNNGTC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.