Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Reverse (-)

6455238 .. 6456703

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAGTTTGAAATGGGAATAGAACCCAATGAGGTTACGCTTATATCTGTAGTTTCAGCTTGTGCTAGCAGTGGAGCTGTTGATGAAGGCATGTACATTCCTGGACTTGCACTGAAATTGGGTGTGCTGTGGGAACCAAAGCTTGTTAATTCTCTGATTAATCTGTATGGAAAGTTGGGCTATTGGGATGCAGTTTGTCGATTTGTTGAGACTATGCCGATACAGAATGTAGTGTCATGGAATTTATTAATGATAGCAATTTACGCTCAAAATGGATCTGCAGCGGACGGGTTGAATTTTTTTAATCTCATGAGAAGGGCTGGAGTTTATCCTGATGATGGTACTCTTGTGTCTTTGCTTCAAGTTTGCGAGAATTTAGGTTTAGGGAATCTAGCACAGGGCGTTATGCTACGCATGGGTATGGACGAGAAGCTATGGAGATCTTTGAAAGCATGCATGGTTAGGAAAGGTGTGCAGCCTGATCACGTCACCTTCACTCACTTGTTAAGTGCTTGTAGCCATTCAGGACTTATCAAGGAAGGGAGAAATTACTTCGACATTATGTCTGAAGTTTATGGAGTAGAGCCTAGGTTGGAACACTATTCATGCATGGTTGATCTTCTAGGTCGCTGTGGGCTGCTGCATGATGCTTATGAGCTGATTAAACGAATGCCAATGGAGCCAAACTCTGGCGTATGGGGGGCTCTTTTCGGTGCTTGTAGGGTGCATGGTAACATTGAGCTTGGGAAGGAAGTTGCAGAAAGGTTATTTGCTTTAGAGCCATCCGATTCTAGAAACTATATCATGCTATCAAATGTGTACTCCGCAGCTGGTTTGTGGAGGGATGCTTCAAAGGTGAGGGCTTTGATGAAGGAGAAAGATCTCGCGAGAACACCCGGTGCAGTTTTATTGAATATGGAAATAAAATTCATCGCTTTGTTGTGGGCAGTGAAAGAAGATATGATCAGTAAGCACAGTGAGAAATTAGCCATTGCATTTGGGCTTTTGGTGATTAATGCTGGCATGCCAATGATTATTACCATGAACCTTCGAATTTTTGGTGTCTGTCACGGCGCTGCAAAGTTCATATCATTGATTGAGAAGCGAACTATCATAATTCGAGATTCTAAGCGGTTCCATCATTTTACTAATGGTATATGCACTCGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

393

Amino Acids

43.81

Weight (kDa)

7.99

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	243 - 301	1.7e-15	E motif
DYW_deaminase	PF14432	318 - 393	1.9e-26	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	887
AciI	CCGC	3 cut(s)	284, 825, 1132
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
AcuI	CTGAAG	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	3 cut(s)	95, 343, 821
AfiI	CCNNNNNNNGG	2 cut(s)	338, 689
AgsI	TTSAA	6 cut(s)	11, 295, 362, 448, 852, 913
AhdI	GACNNNNNGTC	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	7 cut(s)	59, 77, 142, 433, 658, 742, 830
AluI	AGCT	7 cut(s)	59, 77, 142, 433, 658, 742, 830
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	283
ApeKI	GCWGC	6 cut(s)	281, 475, 637, 640, 827, 1076
ApoI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
AseI	ATTAAT	3 cut(s)	159, 248, 1014
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	1076
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	3 cut(s)	481, 868, 1021
AsuII	TTCGAA	1 cut(s)	1051
AsuNHI	GCTAGC	1 cut(s)	65
AvrII	CCTAGG	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BanII	GRGCYC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	1164
BbvI	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BccI	CCATC	3 cut(s)	332, 790, 1146
BceAI	ACGGC	1 cut(s)	1087
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	2 cut(s)	481, 963
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	5 cut(s)	66, 392, 588, 623, 792
BfmI	CTRYAG	2 cut(s)	48, 279
BfoI	RGCGCY	1 cut(s)	1077
BglII	AGATCT	2 cut(s)	440, 880
BisI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	6 cut(s)	283, 477, 639, 642, 829, 1078
Bme1390I	CCNGG	2 cut(s)	102, 897
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmgBI	CACGTC	1 cut(s)	487
BmiI	GGNNCC	3 cut(s)	135, 681, 1136
BmrFI	CCNGG	2 cut(s)	102, 897
BmsI	GCATC	3 cut(s)	178, 637, 835
BmtI	GCTAGC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	1051
BpuMI	CCSGG	1 cut(s)	897
BsaJI	CCNNGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 689
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	3 cut(s)	193, 782, 850
BseLI	CCNNNNNNNGG	2 cut(s)	338, 689
BseMI	GCAATG	1 cut(s)	990
BseXI	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BsgI	GTGCAG	2 cut(s)	494, 921
Bsh1236I	CGCG	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	897
BslI	CCNNNNNNNGG	2 cut(s)	338, 689
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	1051
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
Bsp68I	TCGCGA	1 cut(s)	887
BspACI	CCGC	3 cut(s)	284, 825, 1132
BspFNI	CGCG	1 cut(s)	887
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	135, 681, 1136
BspMAI	CTGCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	1051
BsrDI	GCAATG	1 cut(s)	990
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
BssSI	CACGAG	1 cut(s)	1164
BssT1I	CCWWGG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	1164
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	977
BstAUI	TGTACA	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	1051
BstC8I	GCNNGC	4 cut(s)	67, 454, 1021, 1025
BstDEI	CTNAG	1 cut(s)	1128
BstF5I	GGATG	3 cut(s)	193, 782, 850
BstFNI	CGCG	1 cut(s)	887
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	6 cut(s)	278, 443, 484, 619, 883, 966
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 679
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	3 cut(s)	94, 456, 1027
BstSCI	CCNGG	2 cut(s)	100, 895
BstSFI	CTRYAG	2 cut(s)	48, 279
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
BstX2I	RGATCY	3 cut(s)	275, 440, 880
BstYI	RGATCY	3 cut(s)	275, 440, 880
BtgZI	GCGATG	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	193, 782, 850
BtsI	GCAGTG	2 cut(s)	76, 954
BtsIMutI	CAGTG	4 cut(s)	76, 110, 954, 982
BtuMI	TCGCGA	1 cut(s)	887
Cac8I	GCNNGC	4 cut(s)	67, 454, 1021, 1025
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	94, 342, 820
CviQI	GTAC	3 cut(s)	94, 342, 820
DdeI	CTNAG	1 cut(s)	1128
DpnI	GATC	6 cut(s)	277, 442, 483, 618, 882, 965
DpnII	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
DraIII	CACNNNGTG	1 cut(s)	899
DriI	GACNNNNNGTC	1 cut(s)	562
Eam1105I	GACNNNNNGTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	2 cut(s)	458, 611
EcoT38I	GRGCYC	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	587
FbaI	TGATCA	2 cut(s)	481, 963
Fnu4HI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
FokI	GGATG	3 cut(s)	200, 769, 857
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
FspBI	CTAG	5 cut(s)	66, 392, 588, 623, 792
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	1077
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	1 cut(s)	1076
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	388, 788, 1124
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	3 cut(s)	481, 868, 1021
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	3 cut(s)	156, 568, 787
Hpy188III	TCNNGA	6 cut(s)	310, 332, 525, 792, 886, 1121
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	7 cut(s)	80, 309, 502, 533, 742, 865, 1058
HpyCH4III	ACNGT	1 cut(s)	977
HpyCH4IV	ACGT	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 679
HpyF3I	CTNAG	1 cut(s)	1128
HpySE526I	ACGT	1 cut(s)	486
HspAI	GCGC	1 cut(s)	1074
Ksp22I	TGATCA	2 cut(s)	481, 963
Kzo9I	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
LmnI	GCTCC	2 cut(s)	74, 679
Lsp1109I	GCAGC	6 cut(s)	293, 487, 624, 627, 839, 1063
LweI	GCATC	3 cut(s)	178, 637, 835
MaeI	CTAG	5 cut(s)	66, 392, 588, 623, 792
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	34, 487, 731, 1067
MalI	GATC	6 cut(s)	277, 442, 483, 618, 882, 965
MboI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
MboII	GAAGA	2 cut(s)	611, 968
MflI	RGATCY	3 cut(s)	275, 440, 880
MhlI	GDGCHC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	3 cut(s)	25, 834, 852
Mph1103I	ATGCAT	2 cut(s)	458, 611
MseI	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
MslI	CAYNNNNRTG	2 cut(s)	419, 1028
MspA1I	CMGCKG	2 cut(s)	284, 830
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	2 cut(s)	102, 897
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	2 cut(s)	263, 679
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
NheI	GCTAGC	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	135, 681, 1136
NmuCI	GTSAC	2 cut(s)	487, 1067
NruI	TCGCGA	1 cut(s)	887
NsiI	ATGCAT	2 cut(s)	458, 611
NspI	RCATGY	3 cut(s)	94, 456, 1027
NspV	TTCGAA	1 cut(s)	1051
PaeI	GCATGC	2 cut(s)	456, 1027
PagI	TCATGA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	3 cut(s)	388, 788, 1124
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	283, 477, 639, 642, 829, 1078
PshBI	ATTAAT	3 cut(s)	159, 248, 1014
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	135, 681, 1136
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	275, 440, 880
PvuII	CAGCTG	1 cut(s)	830
RruI	TCGCGA	1 cut(s)	887
RsaI	GTAC	3 cut(s)	95, 343, 821
RsaNI	GTAC	3 cut(s)	94, 342, 820
RseI	CAYNNNNRTG	2 cut(s)	419, 1028
SaqAI	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
SatI	GCNGC	6 cut(s)	282, 476, 638, 641, 828, 1077
Sau3AI	GATC	6 cut(s)	275, 440, 481, 616, 880, 963
ScrFI	CCNGG	2 cut(s)	102, 897
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	3 cut(s)	178, 637, 835
SfcI	CTRYAG	2 cut(s)	48, 279
SfuI	TTCGAA	1 cut(s)	1051
SmiMI	CAYNNNNRTG	2 cut(s)	419, 1028
SphI	GCATGC	2 cut(s)	456, 1027
SsiI	CCGC	3 cut(s)	284, 825, 1132
SspMI	CTAG	5 cut(s)	66, 392, 588, 623, 792
StyD4I	CCNGG	2 cut(s)	100, 895
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	977
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	199, 555, 1051, 1120
TatI	WGTACW	2 cut(s)	93, 819
TfiI	GAWTC	3 cut(s)	388, 788, 1124
Tru1I	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
Tru9I	TTAA	7 cut(s)	147, 159, 248, 303, 506, 663, 1014
TscAI	CASTG	4 cut(s)	76, 117, 954, 982
TseFI	GTSAC	2 cut(s)	487, 1067
TseI	GCWGC	6 cut(s)	281, 475, 637, 640, 827, 1076
Tsp45I	GTSAC	2 cut(s)	487, 1067
TspDTI	ATGAA	7 cut(s)	17, 99, 594, 884, 919, 1058, 1075
TspRI	CASTG	4 cut(s)	76, 117, 954, 982
Van91I	CCANNNNNTGG	1 cut(s)	689
VspI	ATTAAT	3 cut(s)	159, 248, 1014
XapI	RAATTY	5 cut(s)	241, 295, 373, 926, 1053
XbaI	TCTAGA	1 cut(s)	791
XceI	RCATGY	3 cut(s)	94, 456, 1027
XmaJI	CCTAGG	1 cut(s)	587
XspI	CTAG	5 cut(s)	66, 392, 588, 623, 792
Zsp2I	ATGCAT	2 cut(s)	458, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.