Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008101

Physical Location & Seq

Genomic Coordinates Forward (+)

67603919 .. 67605130

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGCCAAACTCTGGCGTGTGCGGGGCTCTTTTTGGTGCTTGTAGGGTGTATGGTAACATTGAGCTTGGGAAGGAAGTTGCGGAAAGGTTATTTGCTTTAGAGCCATCCGATTCCAGAAACTATATCATGCTATCAAATATGTACTCCGCAGCTGGTTTGTGGAGGGATGCTTCAAAGGTGAGGGCTTTGAGGAAGGAGAAAGGTCTTGTGAGAACCCCTGGATGCAGTTTTATTGAATTTGGAAATAAAGTTCATTGCTTTGTTGTGGGTGATCAGTCTCACCCCGAGTCAGAAAGGATATATACCAAGTTGGAAGAAGTGATTGAAAAGATCCGGAAGGCTGGATTTGTGTCTCAAACTGAATTTATTCTACATGATGTTGAAGAGGCAGTGAAAGAAGTTATGATCAGTAAGCACAGTGAGAAATTAGCCATTGCATTTGGGCTTTTGGTTATTAATGCTGGCATGCCAATAATTATTACCAAGAACCTTCGAATTTGTGGTGACTGTCACGCCGCTGCAAAGTTCATATCATTGATTGAGAAGCGAACTATTATAATTCGAGATTCTAAGCGGTTCCATCATTTTACTAATGGTATATGCACTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

208

Amino Acids

23.33

Weight (kDa)

8.39

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	18 - 80	6.1e-17	E motif
Eplus_motif	PF20430	85 - 112	1.9e-08	E+ motif
DYW_deaminase	PF14432	116 - 208	1e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40410
fragaria_vesca	FvH4_2g00730
malus_domestica	MD05G1003000.v1.1 MD10G1003900.v1.1
prunus_persica	Prupe.8G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0251111
rosa_laevigata	RLG00000015483
rosa_multiflora	Rmu_co8188818.1_g000001 Rmu_co8231405.1_g000001 Rmu_sc0002219.1_g000009 Rmu_sc0002219.1_g000010 Rmu_sc0002219.1_g000016 Rmu_sc0002219.1_g000017 Rmu_sc0002960.1_g000013 Rmu_sc0011355.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217030
rosa_rugosa	Rorug05G0500400 Rorug05G0500500
rosa_samantha	Rh6AG008600 Rh6AG008700 Rh6AG009100 Rh6BG002600 Rh6DG006400
rosa_wichuraiana	Rw6G000930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	5 cut(s)	24, 83, 150, 519, 577
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	239, 365, 498
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	177, 239, 329, 386
AjnI	CCWGG	1 cut(s)	220
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	2 cut(s)	67, 155
AluI	AGCT	2 cut(s)	67, 155
Alw26I	GTCTC	2 cut(s)	285, 360
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	152, 521
ApoI	RAATTY	3 cut(s)	239, 365, 498
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	369
AsuHPI	GGTGA	4 cut(s)	193, 275, 284, 518
AsuII	TTCGAA	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	164, 508
BccI	CCATC	2 cut(s)	115, 591
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	2 cut(s)	274, 408
BcoDI	GTCTC	2 cut(s)	285, 360
BisI	GCNGC	3 cut(s)	153, 519, 522
BlsI	GCNGC	3 cut(s)	154, 520, 523
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	6, 581
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	160, 215
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse3DI	GCAATG	2 cut(s)	256, 435
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	107, 175, 230
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	2 cut(s)	256, 435
BseXI	GCAGC	2 cut(s)	164, 508
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	285, 360
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	274, 333, 408
BspACI	CCGC	5 cut(s)	24, 83, 150, 519, 577
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	6, 581
BspPI	GGATC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	256, 435
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	274, 333, 408
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	422, 512
Bst6I	CTCTTC	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	466, 470
BstDEI	CTNAG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	107, 175, 230
BstKTI	GATC	3 cut(s)	277, 336, 411
BstMAI	GTCTC	2 cut(s)	285, 360
BstMBI	GATC	3 cut(s)	274, 333, 408
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	164, 508
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	107, 175, 230
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 427
Cac8I	GCNNGC	2 cut(s)	466, 470
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	130, 377, 469
CviJI	RGCY	9 cut(s)	7, 29, 67, 106, 155, 188, 344, 434, 448
CviKI_1	RGCY	9 cut(s)	7, 29, 67, 106, 155, 188, 344, 434, 448
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	3 cut(s)	276, 335, 410
DpnII	GATC	3 cut(s)	274, 333, 408
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	133, 380, 472
FatI	CATG	3 cut(s)	129, 376, 468
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	2 cut(s)	274, 408
Fnu4HI	GCNGC	3 cut(s)	153, 519, 522
FokI	GGATG	3 cut(s)	94, 182, 237
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	153, 519, 522
GluI	GCNGC	3 cut(s)	153, 519, 522
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	3 cut(s)	133, 380, 472
HinfI	GANTC	3 cut(s)	113, 290, 569
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	4 cut(s)	193, 275, 284, 518
Hpy188I	TCNGA	2 cut(s)	112, 295
Hpy188III	TCNNGA	3 cut(s)	117, 337, 566
HpyAV	CCTTC	4 cut(s)	67, 190, 334, 503
HpyCH4III	ACNGT	2 cut(s)	422, 512
HpyCH4V	TGCA	4 cut(s)	228, 440, 524, 606
HpyF3I	CTNAG	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	133, 380, 472
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	2 cut(s)	274, 408
Kzo9I	GATC	3 cut(s)	274, 333, 408
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	130, 141, 207, 234, 330, 350, 450
Lsp1109I	GCAGC	2 cut(s)	164, 508
LweI	GCATC	2 cut(s)	160, 215
MaeIII	GTNAC	3 cut(s)	56, 506, 512
MalI	GATC	3 cut(s)	276, 335, 410
MboI	GATC	3 cut(s)	274, 333, 408
MboII	GAAGA	2 cut(s)	329, 398
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	6 cut(s)	239, 365, 428, 477, 498, 561
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	159, 177, 186, 382
MroI	TCCGGA	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	2 cut(s)	155, 521
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	274, 333, 408
NlaIII	CATG	3 cut(s)	133, 380, 472
NlaIV	GGNNCC	2 cut(s)	6, 581
NmuCI	GTSAC	2 cut(s)	506, 512
NspI	RCATGY	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	113, 569
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	154, 520, 523
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	6, 581
PsuI	RGATCY	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	3 cut(s)	153, 519, 522
Sau3AI	GATC	3 cut(s)	274, 333, 408
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	69, 92, 157, 183, 208, 495
SfaNI	GCATC	2 cut(s)	160, 215
SfuI	TTCGAA	1 cut(s)	496
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	6 cut(s)	239, 365, 428, 477, 498, 561
SsiI	CCGC	5 cut(s)	24, 83, 150, 519, 577
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	422, 512
TaqI	TCGA	2 cut(s)	496, 565
TasI	AATT	6 cut(s)	239, 365, 428, 477, 498, 561
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	113, 569
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	399, 427
TseFI	GTSAC	2 cut(s)	506, 512
TseI	GCWGC	2 cut(s)	152, 521
Tsp45I	GTSAC	2 cut(s)	506, 512
TspDTI	ATGAA	2 cut(s)	245, 520
TspRI	CASTG	2 cut(s)	399, 427
Van91I	CCANNNNNTGG	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	3 cut(s)	239, 365, 498
XceI	RCATGY	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.