MD05G1058200.v1.1

ABC transporter F family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
10078474 .. 10079757
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1058200.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGAGAATTTCATTGGCAAGGGCACTTTTTGCTCAGCCAACTCTTTTGTTGCTTGATGAACCCACCAACCATCTCGACTTGAGGGCCGTTCTCTGGTTGGAGGAATACTTGTGCCGCTGGAAAAAAACTTTGGTCATTGTCTCACATGACCGAGATTTCCTTAACACGGTTTGCAGTGAGATTATTCATCTGCATGATCTGAAACTTCACATCTACCGAGGGAATTTTGATGGTTTTGAAACTGGTTATGAGCAACGTAGGAAAGAGGTGAACAAAAAGTTTGAAATTTATGACAAGCAGATGAAAGCTGCCAAAATGAGTGGAAGTCGGATCCAACAGGAGAAAGTCAAGGATAAAGCAAAGTCTGCAGCAGCTAAGGAAGCATCAAAGAATAAGGCCAAGGGAAAAGTTGATGAAGATGATGCACCAGCTGAGGCTCCTAAGAAGTGGAGAGATTACAGTGTAGAGTTCCACTTTCCTGAACCTACAGAGCTTACTCCTCCACTATTGCAACTTGTTGAAGTCAGCTTCAGTTATCCAAATCGGGAGGATTTCAGGCTGTCAGGCGTTGATGTTGGTATTGATATGGGGACCCGTGTTGCCATTGTTGGACCTAACGGAGCTGGAAAGTCTACCCTGCTCAACCTTCTTGCAGGTGATTTGGTTCCTTCGGAGGGTGAAGTACGGAGGAGTCAGAAGTTGAGTATCGGTAGGTATTCACAGCACTTTGTGGACCTCCTGACAATGGACGAGACCCCAGTTGAGTACCTTATGCGACTTCATTCAGACAAAGAGGGATTTAGCAAGCAAGAGGCTGTTCGTGCAAAGCTTGGAAAATATGGGCTCCCCAGCCACAACCATCTCACTCCCATTGCAAAATTATCTAGAGGGAAGAAGGCCCGGGTTGTGTTGACGTCAATATCCATGTCAAGGCCCCACATTTTGCTGCTGGATGAACCGACGAATCATTTGGATATGCAGAGTATTGATGCACTGGCCGATGCACTTAATGAATTCACCGGTGGAGTTGTACTGGTGAGTCATGATTCTAGGCTGATATCGCGCGTGTGTGAAAATGAAGAGATGAGTGAAATTTGGGATGTTGATGATGGCACGGTGACCCCTTACCTTGGGACTTTCGAGGAGTACAAGGAGGAGCTACGAAGAGAAATTAAAGAGGAAGTCGATGAGACTGAGGTCAATCCCTCATCTCTTACTTACTGTAAGGATCAGTCTGTGTCTAGAGAAATACATAAAAATATGTCAAATATTAATTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

48.56

Weight (kDa)

5.93

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 187 - 322 2.4e-22 ABC transporter
AAA_21 PF13304 255 - 353 2.1e-06 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
AatII GACGTC 1 cut(s) 917
Acc36I ACCTGC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 632
AccII CGCG 2 cut(s) 1063, 1065
AciI CCGC 1 cut(s) 115
AclWI GGATC 3 cut(s) 325, 338, 1236
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 5 cut(s) 6, 223, 285, 1013, 1092
AcuI CTGAAG 1 cut(s) 514
AcyI GRCGYC 1 cut(s) 914
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 4 cut(s) 684, 767, 1032, 1148
AfiI CCNNNNNNNGG 6 cut(s) 93, 166, 674, 745, 930, 1130
AgeI ACCGGT 1 cut(s) 1019
AgsI TTSAA 3 cut(s) 239, 284, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 8 cut(s) 308, 374, 431, 493, 528, 623, 829, 1159
AluI AGCT 8 cut(s) 308, 374, 431, 493, 528, 623, 829, 1159
Alw26I GTCTC 3 cut(s) 145, 746, 1184
AlwI GGATC 3 cut(s) 325, 338, 1236
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 5 cut(s) 84, 396, 897, 932, 996
ApeKI GCWGC 4 cut(s) 308, 368, 371, 946
ApoI RAATTY 5 cut(s) 6, 223, 285, 1013, 1092
ArsI GACNNNNNNTTYG 2 cut(s) 952, 984
AseI ATTAAT 1 cut(s) 1272
AsiGI ACCGGT 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 1065
AspS9I GGNCC 6 cut(s) 84, 591, 611, 733, 898, 933
AsuC2I CCSGG 2 cut(s) 901, 902
AsuHPI GGTGA 6 cut(s) 280, 668, 689, 1009, 1048, 1129
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 3 cut(s) 591, 611, 733
BaeGI GKGCMC 1 cut(s) 25
BamHI GGATCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 846
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 295, 380, 383, 933
BccI CCATC 4 cut(s) 78, 224, 867, 1103
BceAI ACGGC 1 cut(s) 71
BcnI CCSGG 2 cut(s) 901, 902
BcoDI GTCTC 3 cut(s) 145, 746, 1184
BfaI CTAG 3 cut(s) 885, 1050, 1242
BfmI CTRYAG 2 cut(s) 366, 486
BfuAI ACCTGC 1 cut(s) 644
BisI GCNGC 5 cut(s) 115, 309, 369, 372, 947
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 5 cut(s) 116, 310, 370, 373, 948
Bme1390I CCNGG 2 cut(s) 901, 902
Bme18I GGWCC 3 cut(s) 591, 611, 733
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 6 cut(s) 84, 591, 611, 733, 898, 933
BmiI GGNNCC 7 cut(s) 332, 438, 592, 593, 666, 845, 935
BmrFI CCNGG 2 cut(s) 901, 902
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 4 cut(s) 392, 412, 979, 991
BmuI ACTGGG 1 cut(s) 752
BoxI GACNNNNGTC 1 cut(s) 1196
Bpu10I CCTNAGC 2 cut(s) 375, 432
Bpu1102I GCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 2 cut(s) 901, 902
BsaHI GRCGYC 1 cut(s) 914
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 217, 399, 900, 1129
BsaWI WCCGGW 1 cut(s) 1019
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 166, 674, 745, 930, 1130
Bse118I RCCGGY 1 cut(s) 1019
Bse1I ACTGG 4 cut(s) 247, 758, 999, 1038
Bse3DI GCAATG 1 cut(s) 870
BseDI CCNNGG 4 cut(s) 217, 399, 900, 1129
BseGI GGATG 2 cut(s) 958, 1105
BseLI CCNNNNNNNGG 6 cut(s) 93, 166, 674, 745, 930, 1130
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 47, 423, 1185
BseNI ACTGG 4 cut(s) 247, 758, 999, 1038
BseRI GAGGAG 4 cut(s) 489, 703, 1157, 1169
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 4 cut(s) 295, 380, 383, 933
BseYI CCCAGC 1 cut(s) 848
Bsh1236I CGCG 2 cut(s) 1063, 1065
BshFI GGCC 5 cut(s) 86, 398, 899, 934, 998
BshTI ACCGGT 1 cut(s) 1019
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 2 cut(s) 901, 1020
BslFI GGGAC 2 cut(s) 604, 1147
BslI CCNNNNNNNGG 6 cut(s) 93, 166, 674, 745, 930, 1130
BsmAI GTCTC 3 cut(s) 145, 746, 1184
BsmFI GGGAC 2 cut(s) 604, 1147
BsnI GGCC 5 cut(s) 86, 398, 899, 934, 998
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 2 cut(s) 25, 846
Bsp143I GATC 3 cut(s) 196, 330, 1228
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 1 cut(s) 115
BspANI GGCC 5 cut(s) 86, 398, 899, 934, 998
BspCNI CTCAG 3 cut(s) 46, 424, 1186
BspFNI CGCG 2 cut(s) 1063, 1065
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 7 cut(s) 332, 438, 592, 593, 666, 845, 935
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 3 cut(s) 325, 338, 1236
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 1019
BsrI ACTGG 4 cut(s) 247, 758, 999, 1038
BssAI RCCGGY 1 cut(s) 1019
BssECI CCNNGG 4 cut(s) 217, 399, 900, 1129
BssMI GATC 3 cut(s) 196, 330, 1228
BssNI GRCGYC 1 cut(s) 914
BssT1I CCWWGG 2 cut(s) 399, 1129
Bst4CI ACNGT 4 cut(s) 169, 461, 1117, 1223
Bst6I CTCTTC 2 cut(s) 1074, 1159
BstACI GRCGYC 1 cut(s) 914
BstAPI GCANNNNNTGC 2 cut(s) 29, 365
BstC8I GCNNGC 1 cut(s) 806
BstDEI CTNAG 5 cut(s) 33, 375, 432, 441, 1194
BstEII GGTNACC 1 cut(s) 1117
BstF5I GGATG 2 cut(s) 958, 1105
BstFNI CGCG 2 cut(s) 1063, 1065
BstHHI GCGC 1 cut(s) 1065
BstKTI GATC 3 cut(s) 199, 333, 1231
BstMAI GTCTC 3 cut(s) 145, 746, 1184
BstMBI GATC 3 cut(s) 196, 330, 1228
BstMWI GCNNNNNNNGC 5 cut(s) 29, 365, 380, 821, 1060
BstPAI GACNNNNGTC 1 cut(s) 1196
BstPI GGTNACC 1 cut(s) 1117
BstSCI CCNGG 2 cut(s) 899, 900
BstSFI CTRYAG 2 cut(s) 366, 486
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 2 cut(s) 1063, 1065
BstV1I GCAGC 4 cut(s) 295, 380, 383, 933
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 5 cut(s) 86, 398, 899, 934, 998
BtsCI GGATG 2 cut(s) 958, 1105
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 3 cut(s) 181, 466, 992
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 806
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 1 cut(s) 1065
Cfr10I RCCGGY 1 cut(s) 1019
Cfr13I GGNCC 6 cut(s) 84, 591, 611, 733, 898, 933
Cfr9I CCCGGG 1 cut(s) 900
Csp6I GTAC 4 cut(s) 683, 766, 1031, 1147
CspAI ACCGGT 1 cut(s) 1019
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 4 cut(s) 146, 194, 925, 1043
CviQI GTAC 4 cut(s) 683, 766, 1031, 1147
DdeI CTNAG 5 cut(s) 33, 375, 432, 441, 1194
DpnI GATC 3 cut(s) 198, 332, 1230
DpnII GATC 3 cut(s) 196, 330, 1228
DraIII CACNNNGTG 1 cut(s) 730
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 2 cut(s) 1074, 1159
EarI CTCTTC 2 cut(s) 1074, 1159
Eco130I CCWWGG 2 cut(s) 399, 1129
Eco24I GRGCYC 1 cut(s) 846
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 1059
Eco47I GGWCC 3 cut(s) 591, 611, 733
Eco57I CTGAAG 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 1117
EcoO109I RGGNCCY 2 cut(s) 591, 933
EcoO65I GGTNACC 1 cut(s) 1117
EcoRI GAATTC 1 cut(s) 1013
EcoRV GATATC 1 cut(s) 1059
EcoT14I CCWWGG 2 cut(s) 399, 1129
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 2 cut(s) 399, 1129
FaeI CATG 4 cut(s) 149, 197, 928, 1046
FaqI GGGAC 2 cut(s) 604, 1147
FatI CATG 4 cut(s) 145, 193, 924, 1042
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 5 cut(s) 115, 309, 369, 372, 947
FokI GGATG 2 cut(s) 965, 1112
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 5 cut(s) 115, 309, 369, 372, 947
FspBI CTAG 3 cut(s) 885, 1050, 1242
GlaI GCGC 1 cut(s) 1064
GluI GCNGC 5 cut(s) 115, 309, 369, 372, 947
GsaI CCCAGC 1 cut(s) 852
HaeIII GGCC 5 cut(s) 86, 398, 899, 934, 998
HapII CCGG 2 cut(s) 901, 1020
HhaI GCGC 1 cut(s) 1065
Hin1I GRCGYC 1 cut(s) 914
Hin1II CATG 4 cut(s) 149, 197, 928, 1046
Hin6I GCGC 1 cut(s) 1063
HinP1I GCGC 1 cut(s) 1063
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 4 cut(s) 691, 964, 1039, 1046
HpaII CCGG 2 cut(s) 901, 1020
HphI GGTGA 6 cut(s) 280, 668, 689, 1009, 1048, 1129
Hpy166II GTNNAC 4 cut(s) 271, 633, 733, 912
Hpy188I TCNGA 5 cut(s) 201, 330, 673, 696, 787
Hpy188III TCNNGA 7 cut(s) 74, 479, 545, 739, 885, 1043, 1242
Hpy8I GTNNAC 4 cut(s) 271, 633, 733, 912
Hpy99I CGWCG 1 cut(s) 964
HpyAV CCTTC 3 cut(s) 656, 678, 889
HpyCH4III ACNGT 4 cut(s) 169, 461, 1117, 1223
HpyCH4IV ACGT 2 cut(s) 256, 914
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 365, 380, 821, 1060
HpyF3I CTNAG 5 cut(s) 33, 375, 432, 441, 1194
HpySE526I ACGT 2 cut(s) 256, 914
Hsp92I GRCGYC 1 cut(s) 914
Hsp92II CATG 4 cut(s) 149, 197, 928, 1046
HspAI GCGC 1 cut(s) 1063
KflI GGGWCCC 1 cut(s) 591
Kzo9I GATC 3 cut(s) 196, 330, 1228
LmnI GCTCC 4 cut(s) 442, 620, 849, 1156
Lsp1109I GCAGC 4 cut(s) 295, 380, 383, 933
LweI GCATC 4 cut(s) 392, 412, 979, 991
MaeI CTAG 3 cut(s) 885, 1050, 1242
MaeII ACGT 2 cut(s) 256, 914
MaeIII GTNAC 1 cut(s) 1117
MalI GATC 3 cut(s) 198, 332, 1230
MboI GATC 3 cut(s) 196, 330, 1228
MboII GAAGA 4 cut(s) 428, 904, 1091, 1176
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 2 cut(s) 25, 846
MluCI AATT 8 cut(s) 6, 223, 285, 878, 1013, 1092, 1170, 1273
MlyI GAGTC 2 cut(s) 700, 1048
MmeI TCCRAC 4 cut(s) 78, 308, 358, 589
MseI TTAA 4 cut(s) 162, 1008, 1173, 1272
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 117, 431
MspI CCGG 2 cut(s) 901, 1020
MspR9I CCNGG 2 cut(s) 901, 902
MvnI CGCG 2 cut(s) 1063, 1065
MwoI GCNNNNNNNGC 5 cut(s) 29, 365, 380, 821, 1060
NciI CCSGG 2 cut(s) 901, 902
NdeII GATC 3 cut(s) 196, 330, 1228
NlaIII CATG 4 cut(s) 149, 197, 928, 1046
NlaIV GGNNCC 7 cut(s) 332, 438, 592, 593, 666, 845, 935
NmuCI GTSAC 1 cut(s) 1117
PagI TCATGA 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 964, 1046
PinAI ACCGGT 1 cut(s) 1019
PkrI GCNGC 5 cut(s) 116, 310, 370, 373, 948
PleI GAGTC 2 cut(s) 699, 1047
PpsI GAGTC 2 cut(s) 699, 1047
PpuMI RGGWCCY 1 cut(s) 591
PshAI GACNNNNGTC 1 cut(s) 1196
PshBI ATTAAT 1 cut(s) 1272
Psp5II RGGWCCY 1 cut(s) 591
PspEI GGTNACC 1 cut(s) 1117
PspFI CCCAGC 1 cut(s) 848
PspN4I GGNNCC 7 cut(s) 332, 438, 592, 593, 666, 845, 935
PspPI GGNCC 6 cut(s) 84, 591, 611, 733, 898, 933
PspPPI RGGWCCY 1 cut(s) 591
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 4 cut(s) 684, 767, 1032, 1148
RsaNI GTAC 4 cut(s) 683, 766, 1031, 1147
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 4 cut(s) 162, 1008, 1173, 1272
SatI GCNGC 5 cut(s) 115, 309, 369, 372, 947
Sau3AI GATC 3 cut(s) 196, 330, 1228
Sau96I GGNCC 6 cut(s) 84, 591, 611, 733, 898, 933
SchI GAGTC 2 cut(s) 700, 1048
ScrFI CCNGG 2 cut(s) 901, 902
SduI GDGCHC 2 cut(s) 25, 846
SfaNI GCATC 4 cut(s) 392, 412, 979, 991
SfcI CTRYAG 2 cut(s) 366, 486
SgrAI CRCCGGYG 1 cut(s) 1019
SinI GGWCC 3 cut(s) 591, 611, 733
SmaI CCCGGG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 8 cut(s) 6, 223, 285, 878, 1013, 1092, 1170, 1273
SsiI CCGC 1 cut(s) 115
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 885, 1050, 1242
StyD4I CCNGG 2 cut(s) 899, 900
StyI CCWWGG 2 cut(s) 399, 1129
TaaI ACNGT 4 cut(s) 169, 461, 1117, 1223
TaiI ACGT 2 cut(s) 259, 917
TaqI TCGA 3 cut(s) 75, 1140, 1185
TaqII GACCGA 1 cut(s) 165
TasI AATT 8 cut(s) 6, 223, 285, 878, 1013, 1092, 1170, 1273
TatI WGTACW 2 cut(s) 1030, 1146
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 964, 1046
Tru1I TTAA 4 cut(s) 162, 1008, 1173, 1272
Tru9I TTAA 4 cut(s) 162, 1008, 1173, 1272
TscAI CASTG 3 cut(s) 181, 466, 999
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 4 cut(s) 308, 368, 371, 946
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 8 cut(s) 72, 176, 317, 429, 770, 969, 1026, 1092
TspGWI ACGGA 2 cut(s) 633, 700
TspMI CCCGGG 1 cut(s) 900
TspRI CASTG 3 cut(s) 181, 466, 999
VpaK11BI GGWCC 3 cut(s) 591, 611, 733
VspI ATTAAT 1 cut(s) 1272
XapI RAATTY 5 cut(s) 6, 223, 285, 1013, 1092
XbaI TCTAGA 2 cut(s) 884, 1241
XmaI CCCGGG 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 632
XspI CTAG 3 cut(s) 885, 1050, 1242
ZraI GACGTC 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.