Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Reverse (-)

10080573 .. 10080878

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1058400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTATAGAACCTTTGGGCTCTTGGACTGCGGTTGTGCGGTTGTGCGGTTGTGTGGTTTTGCATTGAGTAGTTGGATTATGTTTATAACTGCAATGGGAAGAAAGAAGGAAGAGGAGAGTGGTGCATCCACGAAGGCTAAGTCAGCTGGCAAACATGCTTCTAAAGATTGGGAAAAAGAGAACATAACAGTCTCTGCAATGTTGGCCAGCATGGACCTGAAACCCGATAAGCCCGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

81

Amino Acids

8.79

Weight (kDa)

8.86

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AciI	CCGC	3 cut(s)	30, 38, 46
AcoI	YGGCCR	1 cut(s)	204
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspS9I	GGNCC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	99, 204
BseGI	GGATG	1 cut(s)	125
BseMI	GCAATG	2 cut(s)	99, 204
BseRI	GAGGAG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	30, 38, 46
BspANI	GGCC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	99, 204
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	148, 208
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 203
BstNSI	RCATGY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	148, 208
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	214
CviAII	CATG	2 cut(s)	155, 211
CviJI	RGCY	5 cut(s)	19, 137, 146, 206, 232
CviKI_1	RGCY	5 cut(s)	19, 137, 146, 206, 232
DdeI	CTNAG	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	158, 214
FaiI	YATR	6 cut(s)	6, 80, 86, 156, 185, 212
FatI	CATG	2 cut(s)	154, 210
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	158, 214
HpyAV	CCTTC	2 cut(s)	100, 127
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	62, 92, 125, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 203
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	158, 214
LpnPI	CCDG	3 cut(s)	132, 220, 230
LweI	GCATC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	111, 122
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	143, 203
NlaIII	CATG	2 cut(s)	158, 214
NspI	RCATGY	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	14, 148, 219
SfaNI	GCATC	1 cut(s)	134
SgeI	CNNG	8 cut(s)	34, 142, 159, 167, 219, 223, 229, 236
SinI	GGWCC	1 cut(s)	214
SsiI	CCGC	3 cut(s)	30, 38, 46
TaaI	ACNGT	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.