Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Reverse (-)

53585494 .. 53586801

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0416900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATAGTTTTGGTTGGGATAGCTCACACATGATAACAAACACATCCACCTTATGGAGCAACCATCATCAACATGATCTTGATCAAGAAAGCTTATTGATGTCCAATAACTCGAGCTCCAGTGTTTTCAATATTCCAATCCAAGATCATCAACTCCAACAAGTCCAAGAATCTCACAAAATGATGAAGTCAAATACCCAAAGTCCACCGAGTAATGCTGAAATGGCTCAGCAACATTGGGGTTGTAAAAATTTGGCCGCTGAGCAATTGTGTCAGGCCCCTTTTATGATCAATAGGACTTATTCAATGAACTCACTGATCAGCAGTGCTTTCATGGCTGATGATCATCATGTCGAGGCTCGGCCAGCATCAACGGCAACATGTTCCATTGAGTCTCTGGATTGCTTGCTCTCTGCTACTAATAGCAACACTGCAGAAGACACTACATCTCTAAATCAAGATGATGCAATTAATTCTACGATTTTTCCAGATTGTCGAAGATCAAACTTATGGAACTTCGGAACAGGAAGTGCTACTACTGCAGTCTCATCCGGGGAGACTGAGACCGCTAACAACACCTCAAGACCAAATAGAGAAACTCAAAGTTTCAATAAGAGAACCCGCAACAATGAGCAAAGTGATCCGCTCAAGTTTTATGCAGAAAATTATAGTCAACACTTTGATCTTCTTCAAACAGATTCTTCAACTACTGCTACAGAAGGTGGTGGGTTTAGGCTCATCTCTGAAAACCCACCAAAGGCAAAGAAGATCAAATCCTCATCAGATCAGAAGTCCACTGCTCCAAGCACAACCAACATCAACTTTCAACAACCAACTTCATCATCACTATCAGGTTCCTCCACTGATCAAGAACCTGATCCAGAGGTCATTGCACAGATGAAGGAGATGATTTACCGCGCCGCGGCTTTCAGGCCAGTCAATTTGGGCATAGAGATGGTGGAGCGGCCCAAGAGGAAGAATGTGAAGATCTCGTCTGATCCACAGACGGTGGCTGCAAGGCAAAGGAGGGAGAGGATCAGTGAGAGAATTAGGGTTTTGCAGAAGCTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCTATGCTCGATGAGGCTGCAAATTACCTCAAGTTCCTCAGGTCACAAGTCAAGGCTTTAGAGAATTTGGGCCAAAAGATCGATTCCATGAGTAATTGTCTTCCTCCTACAAGCTTTGCTTTCTCTTTCAATCCTTCCTTTCCCATGCAGACCCACCATGTCCCACTCCACCTTAACGCTAATCATAATATCCATCAACCCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

435

Amino Acids

48.38

Weight (kDa)

6.21

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	339 - 380	7.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	341 - 384	5.5e-10	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	2 cut(s)	646, 964
AccII	CGCG	2 cut(s)	918, 923
AciI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
AclWI	GGATC	4 cut(s)	635, 872, 992, 1043
AcoI	YGGCCR	2 cut(s)	255, 362
AcsI	RAATTY	2 cut(s)	250, 1162
AfiI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	7 cut(s)	130, 306, 610, 692, 705, 827, 1228
AjnI	CCWGG	1 cut(s)	1072
AluBI	AGCT	5 cut(s)	24, 93, 117, 1066, 1212
AluI	AGCT	5 cut(s)	24, 93, 117, 1066, 1212
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	4 cut(s)	399, 550, 551, 557
AlwI	GGATC	4 cut(s)	635, 872, 992, 1043
AlwNI	CAGNNNCTG	1 cut(s)	1066
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	6 cut(s)	255, 276, 362, 932, 965, 1168
ApeKI	GCWGC	2 cut(s)	1013, 1115
ApoI	RAATTY	2 cut(s)	250, 1162
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	3 cut(s)	277, 966, 1168
AsuC2I	CCSGG	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	1136
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbsI	GAAGAC	2 cut(s)	444, 1190
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	1000, 1102
BccI	CCATC	4 cut(s)	72, 949, 1081, 1299
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	1 cut(s)	1074
BclI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	4 cut(s)	399, 550, 551, 557
BfaI	CTAG	1 cut(s)	1306
BfmI	CTRYAG	3 cut(s)	432, 540, 714
BglII	AGATCT	1 cut(s)	987
BisI	GCNGC	6 cut(s)	258, 921, 924, 965, 1014, 1116
BlpI	GCTNAGC	2 cut(s)	228, 261
BlsI	GCNGC	6 cut(s)	259, 922, 925, 966, 1015, 1117
Bme1390I	CCNGG	2 cut(s)	553, 1074
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	277, 966, 1168
BmiI	GGNNCC	3 cut(s)	279, 856, 1071
BmrFI	CCNGG	2 cut(s)	553, 1074
BmsI	GCATC	2 cut(s)	377, 454
BpiI	GAAGAC	2 cut(s)	444, 1190
BpmI	CTGGAG	1 cut(s)	103
Bpu1102I	GCTNAGC	2 cut(s)	228, 261
BpuEI	CTTGAG	3 cut(s)	565, 632, 1112
BpuMI	CCSGG	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	1179
BsaBI	GATNNNNATC	2 cut(s)	81, 345
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	552, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 757, 922
Bse1I	ACTGG	2 cut(s)	120, 935
Bse21I	CCTNAGG	1 cut(s)	1136
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	2 cut(s)	81, 345
BseBI	CCWGG	1 cut(s)	1074
BseCI	ATCGAT	1 cut(s)	1179
BseDI	CCNNGG	2 cut(s)	552, 921
BseGI	GGATG	2 cut(s)	44, 548
BseJI	GATNNNNATC	2 cut(s)	81, 345
BseLI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	4 cut(s)	242, 252, 552, 1150
BseNI	ACTGG	2 cut(s)	120, 935
BseXI	GCAGC	2 cut(s)	1000, 1102
Bsh1236I	CGCG	2 cut(s)	918, 923
BshFI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BshVI	ATCGAT	1 cut(s)	1179
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	1244
BslI	CCNNNNNNNGG	3 cut(s)	54, 757, 922
BsmAI	GTCTC	4 cut(s)	399, 550, 551, 557
BsmFI	GGGAC	1 cut(s)	1244
BsnI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1720I	GCTNAGC	2 cut(s)	228, 261
BspACI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
BspANI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BspCNI	CTCAG	4 cut(s)	241, 253, 553, 1149
BspDI	ATCGAT	1 cut(s)	1179
BspFNI	CGCG	2 cut(s)	918, 923
BspLI	GGNNCC	3 cut(s)	279, 856, 1071
BspMAI	CTGCAG	2 cut(s)	436, 544
BspPI	GGATC	4 cut(s)	635, 872, 992, 1043
BspTNI	GGTCTC	1 cut(s)	557
BsrBI	CCGCTC	2 cut(s)	646, 964
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	2 cut(s)	120, 935
BssECI	CCNNGG	2 cut(s)	552, 921
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	1009
BstC8I	GCNNGC	2 cut(s)	366, 407
BstDEI	CTNAG	4 cut(s)	228, 261, 561, 1136
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	44, 548
BstFNI	CGCG	2 cut(s)	918, 923
BstHHI	GCGC	1 cut(s)	920
BstMAI	GTCTC	4 cut(s)	399, 550, 551, 557
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 335, 365, 374, 539
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	551, 1072
BstSFI	CTRYAG	3 cut(s)	432, 540, 714
BstUI	CGCG	2 cut(s)	918, 923
BstV1I	GCAGC	2 cut(s)	1000, 1102
BstV2I	GAAGAC	2 cut(s)	444, 1190
BstX2I	RGATCY	1 cut(s)	987
BstYI	RGATCY	1 cut(s)	987
Bsu15I	ATCGAT	1 cut(s)	1179
Bsu36I	CCTNAGG	1 cut(s)	1136
BsuRI	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
BsuTUI	ATCGAT	1 cut(s)	1179
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	44, 548
BtsI	GCAGTG	4 cut(s)	331, 429, 795, 1092
BtsIMutI	CAGTG	8 cut(s)	127, 314, 331, 429, 795, 861, 1045, 1092
Cac8I	GCNNGC	2 cut(s)	366, 407
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	3 cut(s)	277, 966, 1168
Cfr42I	CCGCGG	1 cut(s)	924
ClaI	ATCGAT	1 cut(s)	1179
CviAII	CATG	8 cut(s)	31, 74, 334, 350, 381, 1186, 1243, 1256
DdeI	CTNAG	4 cut(s)	228, 261, 561, 1136
EaeI	YGGCCR	2 cut(s)	255, 362
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	117
Eco81I	CCTNAGG	1 cut(s)	1136
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	1072
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
FalI	AAGNNNNNCTT	2 cut(s)	1201, 1233
FaqI	GGGAC	1 cut(s)	1244
FatI	CATG	8 cut(s)	30, 73, 333, 349, 380, 1185, 1242, 1255
FauI	CCCGC	1 cut(s)	629
FbaI	TGATCA	5 cut(s)	82, 288, 318, 343, 865
Fnu4HI	GCNGC	6 cut(s)	258, 921, 924, 965, 1014, 1116
FokI	GGATG	2 cut(s)	31, 535
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	6 cut(s)	258, 921, 924, 965, 1014, 1116
FspBI	CTAG	1 cut(s)	1306
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	6 cut(s)	258, 921, 924, 965, 1014, 1116
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	6 cut(s)	257, 278, 364, 934, 967, 1170
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	2 cut(s)	91, 1210
HinfI	GANTC	4 cut(s)	170, 392, 698, 1181
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	206, 674, 795
Hpy188I	TCNGA	5 cut(s)	521, 745, 784, 789, 997
Hpy188III	TCNNGA	8 cut(s)	80, 86, 398, 458, 488, 582, 869, 881
Hpy8I	GTNNAC	3 cut(s)	206, 674, 795
HpyAV	CCTTC	3 cut(s)	713, 895, 1242
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4V	TGCA	9 cut(s)	434, 467, 542, 659, 893, 1016, 1060, 1118, 1246
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 335, 365, 374, 539
HpyF3I	CTNAG	4 cut(s)	228, 261, 561, 1136
Hsp92II	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
HspAI	GCGC	1 cut(s)	918
Ksp22I	TGATCA	5 cut(s)	82, 288, 318, 343, 865
KspI	CCGCGG	1 cut(s)	924
LmnI	GCTCC	4 cut(s)	57, 122, 805, 961
Lsp1109I	GCAGC	2 cut(s)	1000, 1102
LweI	GCATC	2 cut(s)	377, 454
MaeI	CTAG	1 cut(s)	1306
MaeIII	GTNAC	1 cut(s)	1140
MbiI	CCGCTC	2 cut(s)	646, 964
MboII	GAAGA	9 cut(s)	449, 510, 677, 680, 693, 778, 988, 997, 1190
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	987
MhlI	GDGCHC	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	2 cut(s)	471, 1272
MslI	CAYNNNNRTG	2 cut(s)	72, 953
MspA1I	CMGCKG	2 cut(s)	260, 923
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	2 cut(s)	553, 1074
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	1074
MvnI	CGCG	2 cut(s)	918, 923
MwoI	GCNNNNNNNGC	5 cut(s)	224, 335, 365, 374, 539
NciI	CCSGG	1 cut(s)	553
NlaIII	CATG	8 cut(s)	34, 77, 337, 353, 384, 1189, 1246, 1259
NlaIV	GGNNCC	3 cut(s)	279, 856, 1071
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	1140
NspI	RCATGY	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	170, 698, 1181
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	6 cut(s)	259, 922, 925, 966, 1015, 1117
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	1072
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	3 cut(s)	279, 856, 1071
PspPI	GGNCC	3 cut(s)	277, 966, 1168
PspXI	VCTCGAGB	1 cut(s)	112
PstI	CTGCAG	2 cut(s)	436, 544
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	987
RseI	CAYNNNNRTG	2 cut(s)	72, 953
SacI	GAGCTC	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	471, 1272
SatI	GCNGC	6 cut(s)	258, 921, 924, 965, 1014, 1116
Sau96I	GGNCC	3 cut(s)	277, 966, 1168
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	553, 1074
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	377, 454
SfcI	CTRYAG	3 cut(s)	432, 540, 714
Sfr274I	CTCGAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	924
SgrBI	CCGCGG	1 cut(s)	924
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	72, 953
SmlI	CTYRAG	4 cut(s)	112, 580, 647, 1127
SmoI	CTYRAG	4 cut(s)	112, 580, 647, 1127
SsiI	CCGC	8 cut(s)	258, 567, 622, 644, 916, 921, 923, 964
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	1306
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	551, 1072
TaaI	ACNGT	1 cut(s)	1009
TaqI	TCGA	5 cut(s)	113, 354, 496, 1107, 1179
TauI	GCSGC	4 cut(s)	260, 923, 926, 967
TfiI	GAWTC	3 cut(s)	170, 698, 1181
Tru1I	TTAA	2 cut(s)	471, 1272
Tru9I	TTAA	2 cut(s)	471, 1272
TscAI	CASTG	8 cut(s)	127, 321, 331, 436, 802, 868, 1045, 1099
TseFI	GTSAC	1 cut(s)	1140
TseI	GCWGC	2 cut(s)	1013, 1115
Tsp45I	GTSAC	1 cut(s)	1140
TspDTI	ATGAA	5 cut(s)	200, 322, 323, 828, 914
TspRI	CASTG	8 cut(s)	127, 321, 331, 436, 802, 868, 1045, 1099
Van91I	CCANNNNNTGG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	2 cut(s)	250, 1162
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.