Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Reverse (-)

10079989 .. 10080171

Gene Structure 183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1058300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAGATAACACATGGGAAGAGATATGGTTTGGTTGCGCCCAATGGAATGGGCAAGTCTACTCTCCTGAAGCTTCTTGCTTGGAGGAAGATTCCAGCACCAAAAAATATTGATGTGCATTTGGTTAAGCAGGAGGTAGTTGGTGATGACAAAACTGCTCTTGAAGCAGTTGTTTTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

61

Amino Acids

6.58

Weight (kDa)

9.9

Isoelectric Point (pI)

20.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 40	1.4e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	2 cut(s)	73, 180
AluI	AGCT	2 cut(s)	73, 180
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	2 cut(s)	73, 180
CviKI_1	RGCY	2 cut(s)	73, 180
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	89
FaeI	CATG	1 cut(s)	17
FaiI	YATR	2 cut(s)	15, 27
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	67, 161
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	80, 108, 116
MboII	GAAGA	3 cut(s)	16, 31, 100
MnlI	CCTC	2 cut(s)	78, 127
MseI	TTAA	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	126
SetI	ASST	3 cut(s)	75, 138, 182
SgeI	CNNG	8 cut(s)	26, 67, 79, 89, 93, 107, 143, 173
SspI	AATATT	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.