Rh1CG111300

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002371
Physical Location & Seq
Reverse (-)
22476492 .. 22476929
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG111300.1

Sequence Viewer

Length: 438 bp
ATGGGGAAGTCTACCCTCCTGAAGCTTCTTTCTTGGAGGAAGATTCCAGTACCAGAAAACATTGATGTTCTTTTAGTTGAACAGGAGGTAGTTGGTGATGATAGAAGTGCTCTTGAAGCAGTTGTTTCAGCTAATGAAGAACTTGTAAAGCTCCGGGAAGAGGTTGCAGCATTGCAGAATTCAGATTCTGCTCCCGGTGGTGAGGAAGAGGATAGTCATTATGATGATGCAGGAGAGAAGCTTGCTGAGTTGTACGATCAATTGCAGCTGATGGGATCAGATGCTGCTGAAGTCCAGGGTTCAAAGATTCTTTCCGGTTTGGGATTTACAAAGGATATGCAAGGCCGCCCAACTAAGTCATTCAGTGGTGTTTGGAGAATGAGAATTTCATTAGCTAGGGCACTTTTTGTGCAACCAACTCTTTTGTTGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

4.57

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 145 5.1e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 346
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 178, 384
AcuI CTGAAG 2 cut(s) 41, 309
AfaI GTAC 2 cut(s) 51, 254
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 80, 116, 303
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 6 cut(s) 25, 131, 151, 241, 268, 395
AluI AGCT 6 cut(s) 25, 131, 151, 241, 268, 395
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 283
AlwNI CAGNNNCTG 2 cut(s) 188, 284
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 167, 265, 284
ApoI RAATTY 2 cut(s) 178, 384
AsuC2I CCSGG 2 cut(s) 155, 195
AsuHPI GGTGA 2 cut(s) 107, 212
BaeGI GKGCMC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 3 cut(s) 179, 271, 277
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 2 cut(s) 155, 195
BfaI CTAG 1 cut(s) 396
BisI GCNGC 4 cut(s) 168, 266, 285, 346
BlsI GCNGC 4 cut(s) 169, 267, 286, 347
Bme1390I CCNGG 3 cut(s) 155, 195, 296
BmrFI CCNGG 3 cut(s) 155, 195, 296
BmsI GCATC 2 cut(s) 217, 271
BpuMI CCSGG 2 cut(s) 155, 195
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 3 cut(s) 179, 271, 277
BshFI GGCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 3 cut(s) 154, 195, 315
BslI CCNNNNNNNGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 112, 403
Bsp143I GATC 2 cut(s) 256, 275
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 256, 275
Bst2UI CCWGG 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 153, 201
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 246, 354
BstKTI GATC 2 cut(s) 259, 278
BstMBI GATC 2 cut(s) 256, 275
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 3 cut(s) 153, 193, 294
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 179, 271, 277
BsuRI GGCC 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 243
CaiI CAGNNNCTG 2 cut(s) 188, 284
Csp6I GTAC 2 cut(s) 50, 253
CviJI RGCY 7 cut(s) 25, 131, 151, 241, 268, 345, 395
CviKI_1 RGCY 7 cut(s) 25, 131, 151, 241, 268, 345, 395
CviQI GTAC 2 cut(s) 50, 253
DdeI CTNAG 2 cut(s) 246, 354
DpnI GATC 2 cut(s) 258, 277
DpnII GATC 2 cut(s) 256, 275
Eam1104I CTCTTC 2 cut(s) 153, 201
EarI CTCTTC 2 cut(s) 153, 201
Eco57I CTGAAG 2 cut(s) 41, 309
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 294
FaiI YATR 2 cut(s) 222, 338
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 168, 266, 285, 346
Fsp4HI GCNGC 4 cut(s) 168, 266, 285, 346
FspBI CTAG 1 cut(s) 396
GluI GCNGC 4 cut(s) 168, 266, 285, 346
HaeIII GGCC 1 cut(s) 345
HapII CCGG 3 cut(s) 154, 195, 315
HindIII AAGCTT 2 cut(s) 23, 239
HinfI GANTC 3 cut(s) 43, 185, 307
HpaII CCGG 3 cut(s) 154, 195, 315
HphI GGTGA 2 cut(s) 107, 212
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 184, 280
Hpy188III TCNNGA 2 cut(s) 19, 113
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4V TGCA 6 cut(s) 167, 175, 230, 265, 340, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 246, 354
Kzo9I GATC 2 cut(s) 256, 275
LmnI GCTCC 2 cut(s) 156, 196
Lsp1109I GCAGC 3 cut(s) 179, 271, 277
LweI GCATC 2 cut(s) 217, 271
MaeI CTAG 1 cut(s) 396
MalI GATC 2 cut(s) 258, 277
MboI GATC 2 cut(s) 256, 275
MboII GAAGA 4 cut(s) 52, 149, 170, 218
MfeI CAATTG 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 112, 403
MluCI AATT 3 cut(s) 178, 260, 384
MnlI CCTC 6 cut(s) 26, 30, 79, 154, 196, 202
MseI TTAA 1 cut(s) 436
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 3 cut(s) 154, 195, 315
MspR9I CCNGG 3 cut(s) 155, 195, 296
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 2 cut(s) 155, 195
NdeII GATC 2 cut(s) 256, 275
PfeI GAWTC 3 cut(s) 43, 185, 307
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 4 cut(s) 169, 267, 286, 347
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PstNI CAGNNNCTG 2 cut(s) 188, 284
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 51, 254
RsaNI GTAC 2 cut(s) 50, 253
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 4 cut(s) 168, 266, 285, 346
Sau3AI GATC 2 cut(s) 256, 275
ScrFI CCNGG 3 cut(s) 155, 195, 296
SduI GDGCHC 2 cut(s) 112, 403
SetI ASST 8 cut(s) 27, 90, 133, 153, 165, 243, 270, 397
SfaNI GCATC 2 cut(s) 217, 271
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 3 cut(s) 178, 260, 384
SsiI CCGC 1 cut(s) 346
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 153, 193, 294
TasI AATT 3 cut(s) 178, 260, 384
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 3 cut(s) 43, 185, 307
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 370
TseI GCWGC 3 cut(s) 167, 265, 284
TspDTI ATGAA 2 cut(s) 150, 378
TspRI CASTG 1 cut(s) 370
XapI RAATTY 2 cut(s) 178, 384
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.