Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000308.1

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Forward (+)

150204 .. 152456

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000308.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgggaaaaaagaagacagatgaagctggtgccgccatgaagggtaagtcaaccggaaaagatgcttctaaagatggaaagaaagtgaaagcaccaacagtctccgccatgttggccaacatggaccagaaacctgagaagcccaagaaggcatcttcctctagtgcaaaggcaaaagtcgctccaaaactttcatcctacactgatggtattgatctccctccctctgatgatgaggtggaagaggaacaacaatccaatcagcaaaggaggtcagaggctaagacgattgatatatccattacagagaaagagttaaaaaaacgtgaaaagaaggaccttcttgctgcccatgctgctgagctgtcaaagaaggaggccctgagagatgatcatgatgctttcactgttgttattggaagcagggcttcagtacttgagggtgaagatgcagatgctaatatcaaggacatatcaatagatagtttttctgtggcggctcgaggaaaggaactactaaagaatacatcagtgaagatatctcatgggaagagatatggtctggttggtccaaatgggatggggaagtctaccctcctgaagcttcttgcttggaggaagattccagtaccaaaaaacatcgatgttcttttagttgaacaggaggtagttggtgatgatagaagtgctctggaagcagttgtttcagctaatgaagaacttgtcaagctccgggaagaggttgcagcattgcagaattcagattctgctcccggtggtgaggaagaggatagtcatgatgatgatgcaggagagaagcttgctgagttgtacgatcaattgcagctgatgggatcggatgctgctgaagcccaggcttcaaagattcttgccggtttgggatttacaaaggatatgcaaggccgccccactaagtcattcagtggtggtagaggcaccagtggtgccacactgatggtgaaaattctcgactttggtgatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

335

Amino Acids

35.81

Weight (kDa)

5.45

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	29, 956, 965
AccI	GTMKAC	1 cut(s)	590
AciI	CCGC	4 cut(s)	33, 105, 497, 925
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	757, 984
AcuI	CTGAAG	3 cut(s)	414, 620, 888
AfaI	GTAC	3 cut(s)	435, 630, 833
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgsI	TTSAA	2 cut(s)	659, 882
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	7 cut(s)	26, 364, 604, 710, 730, 820, 847
AluI	AGCT	7 cut(s)	26, 364, 604, 710, 730, 820, 847
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	862
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	3 cut(s)	114, 378, 922
ApeKI	GCWGC	5 cut(s)	347, 356, 746, 844, 863
ApoI	RAATTY	2 cut(s)	757, 984
AspS9I	GGNCC	4 cut(s)	124, 337, 379, 569
AsuC2I	CCSGG	2 cut(s)	734, 774
AsuHPI	GGTGA	4 cut(s)	455, 686, 791, 991
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	3 cut(s)	124, 337, 569
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	3 cut(s)	29, 956, 965
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	5 cut(s)	334, 343, 758, 850, 856
BccI	CCATC	5 cut(s)	68, 200, 574, 844, 970
BciT130I	CCWGG	1 cut(s)	875
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	2 cut(s)	734, 774
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	8 cut(s)	33, 348, 357, 498, 747, 845, 864, 925
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	8 cut(s)	34, 349, 358, 499, 748, 846, 865, 926
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	3 cut(s)	734, 774, 875
Bme18I	GGWCC	3 cut(s)	124, 337, 569
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	4 cut(s)	124, 337, 379, 569
BmiI	GGNNCC	3 cut(s)	31, 958, 967
BmrFI	CCNGG	3 cut(s)	734, 774, 875
BmsI	GCATC	7 cut(s)	52, 161, 388, 439, 445, 796, 850
BpiI	GAAGAC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	734, 774
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	873
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	2 cut(s)	626, 960
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	875
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	3 cut(s)	194, 585, 865
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	4 cut(s)	126, 351, 374, 816
BseNI	ACTGG	2 cut(s)	626, 960
BseXI	GCAGC	5 cut(s)	334, 343, 758, 850, 856
BshFI	GGCC	3 cut(s)	116, 380, 924
BshNI	GGYRCC	3 cut(s)	29, 956, 965
BshVI	ATCGAT	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	4 cut(s)	54, 733, 774, 894
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	116, 380, 924
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	214, 391, 835, 854
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	4 cut(s)	33, 105, 497, 925
BspANI	GGCC	3 cut(s)	116, 380, 924
BspCNI	CTCAG	4 cut(s)	127, 352, 375, 817
BspDI	ATCGAT	1 cut(s)	642
BspHI	TCATGA	2 cut(s)	394, 796
BspLI	GGNNCC	3 cut(s)	31, 958, 967
BspPI	GGATC	1 cut(s)	862
BspT107I	GGYRCC	3 cut(s)	29, 956, 965
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	2 cut(s)	626, 960
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	4 cut(s)	214, 391, 835, 854
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	2 cut(s)	100, 409
Bst6I	CTCTTC	4 cut(s)	237, 545, 732, 780
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	6 cut(s)	135, 282, 360, 383, 825, 933
BstF5I	GGATG	3 cut(s)	194, 585, 865
BstKTI	GATC	4 cut(s)	217, 394, 838, 857
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	214, 391, 835, 854
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 113, 179, 353, 356, 695, 869
BstNI	CCWGG	1 cut(s)	875
BstSCI	CCNGG	3 cut(s)	732, 772, 873
BstV1I	GCAGC	5 cut(s)	334, 343, 758, 850, 856
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	976
Bsu15I	ATCGAT	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	116, 380, 924
BsuTUI	ATCGAT	1 cut(s)	642
BtsCI	GGATG	3 cut(s)	194, 585, 865
BtsIMutI	CAGTG	6 cut(s)	201, 405, 537, 949, 967, 971
Cac8I	GCNNGC	1 cut(s)	822
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	2 cut(s)	394, 796
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	4 cut(s)	124, 337, 379, 569
ClaI	ATCGAT	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	434, 629, 832
CviAII	CATG	7 cut(s)	37, 109, 121, 353, 395, 545, 797
CviQI	GTAC	3 cut(s)	434, 629, 832
DdeI	CTNAG	6 cut(s)	135, 282, 360, 383, 825, 933
DpnI	GATC	4 cut(s)	216, 393, 837, 856
DpnII	GATC	4 cut(s)	214, 391, 835, 854
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	4 cut(s)	237, 545, 732, 780
EarI	CTCTTC	4 cut(s)	237, 545, 732, 780
EciI	GGCGGA	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	124, 337, 569
Eco57I	CTGAAG	3 cut(s)	414, 620, 888
Eco88I	CYCGRG	1 cut(s)	501
EcoO109I	RGGNCCY	2 cut(s)	337, 379
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	540
FaeI	CATG	7 cut(s)	40, 112, 124, 356, 398, 548, 800
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	7 cut(s)	36, 108, 120, 352, 394, 544, 796
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	8 cut(s)	33, 348, 357, 498, 747, 845, 864, 925
FokI	GGATG	3 cut(s)	181, 592, 872
Fsp4HI	GCNGC	8 cut(s)	33, 348, 357, 498, 747, 845, 864, 925
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	8 cut(s)	33, 348, 357, 498, 747, 845, 864, 925
HaeIII	GGCC	3 cut(s)	116, 380, 924
HapII	CCGG	4 cut(s)	54, 733, 774, 894
Hin1II	CATG	7 cut(s)	40, 112, 124, 356, 398, 548, 800
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	602, 818
HinfI	GANTC	3 cut(s)	622, 764, 886
HpaII	CCGG	4 cut(s)	54, 733, 774, 894
HphI	GGTGA	4 cut(s)	455, 686, 791, 991
Hpy166II	GTNNAC	2 cut(s)	51, 591
Hpy188I	TCNGA	4 cut(s)	229, 277, 763, 859
Hpy188III	TCNNGA	5 cut(s)	395, 598, 692, 797, 989
Hpy8I	GTNNAC	2 cut(s)	51, 591
HpyAV	CCTTC	5 cut(s)	34, 142, 328, 350, 367
HpyCH4III	ACNGT	2 cut(s)	100, 409
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	7 cut(s)	167, 452, 746, 754, 809, 844, 919
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 113, 179, 353, 356, 695, 869
HpyF3I	CTNAG	6 cut(s)	135, 282, 360, 383, 825, 933
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	7 cut(s)	40, 112, 124, 356, 398, 548, 800
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	214, 391, 835, 854
LmnI	GCTCC	3 cut(s)	187, 735, 775
Lsp1109I	GCAGC	5 cut(s)	334, 343, 758, 850, 856
LweI	GCATC	7 cut(s)	52, 161, 388, 439, 445, 796, 850
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	325
MalI	GATC	4 cut(s)	216, 393, 837, 856
MboI	GATC	4 cut(s)	214, 391, 835, 854
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	757, 839, 984
MluNI	TGGCCA	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	2 cut(s)	801, 974
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	4 cut(s)	54, 733, 774, 894
MspR9I	CCNGG	3 cut(s)	734, 774, 875
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	7 cut(s)	32, 113, 179, 353, 356, 695, 869
NciI	CCSGG	2 cut(s)	734, 774
NdeII	GATC	4 cut(s)	214, 391, 835, 854
NlaIII	CATG	7 cut(s)	40, 112, 124, 356, 398, 548, 800
NlaIV	GGNNCC	3 cut(s)	31, 958, 967
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	2 cut(s)	394, 796
PfeI	GAWTC	3 cut(s)	622, 764, 886
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	8 cut(s)	34, 349, 358, 499, 748, 846, 865, 926
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	3 cut(s)	31, 958, 967
PspPI	GGNCC	4 cut(s)	124, 337, 379, 569
PspPPI	RGGWCCY	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	435, 630, 833
RsaNI	GTAC	3 cut(s)	434, 629, 832
RseI	CAYNNNNRTG	2 cut(s)	801, 974
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	8 cut(s)	33, 348, 357, 498, 747, 845, 864, 925
Sau3AI	GATC	4 cut(s)	214, 391, 835, 854
Sau96I	GGNCC	4 cut(s)	124, 337, 379, 569
ScaI	AGTACT	1 cut(s)	435
ScrFI	CCNGG	3 cut(s)	734, 774, 875
SduI	GDGCHC	1 cut(s)	691
SfaNI	GCATC	7 cut(s)	52, 161, 388, 439, 445, 796, 850
Sfr274I	CTCGAG	1 cut(s)	501
SinI	GGWCC	3 cut(s)	124, 337, 569
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	801, 974
SmlI	CTYRAG	2 cut(s)	437, 501
SmoI	CTYRAG	2 cut(s)	437, 501
Sse9I	AATT	3 cut(s)	757, 839, 984
SsiI	CCGC	4 cut(s)	33, 105, 497, 925
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	732, 772, 873
TaaI	ACNGT	2 cut(s)	100, 409
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	502, 642, 990
TasI	AATT	3 cut(s)	757, 839, 984
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	3 cut(s)	35, 500, 927
TfiI	GAWTC	3 cut(s)	622, 764, 886
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	6 cut(s)	208, 412, 537, 949, 967, 978
TseI	GCWGC	5 cut(s)	347, 356, 746, 844, 863
TspDTI	ATGAA	4 cut(s)	36, 53, 183, 729
TspRI	CASTG	6 cut(s)	208, 412, 537, 949, 967, 978
VpaK11BI	GGWCC	3 cut(s)	124, 337, 569
XapI	RAATTY	2 cut(s)	757, 984
XhoI	CTCGAG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.