Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Reverse (-)

19897085 .. 19897568

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGAGTAAGTCAACCGGAAAAGATGCTTCTAAAGATGGGAAGAAGGTGAAAGTACCAACAGTCTCTGCCATGTTGGCCAACATGGACCAGATACCTGAGAAGCCCAAGAAGGCATCTTCCTCCAGTGCAAAGGCAAAAGTGGCTCCAAAACTTTCATCCTATTCTGATGGTATCGATCTCCCTCCCTCTGATGATGAGGCGGAAGAGGAACAACAATCCAATCAGCAAAGGAGGGCTTCAGTACTTGAAGGTGAAGATGCAGATGCTAATATCAAGGATATATCAATAGATAGTTTTTCGTGGCGGCTGGCGGGAAGGAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

109

Amino Acids

11.79

Weight (kDa)

6.29

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	203, 307, 314
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	57, 246
AgsI	TTSAA	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	61, 266
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	80
BccI	CCATC	2 cut(s)	32, 164
BcoDI	GTCTC	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	4 cut(s)	16, 125, 250, 256
BpmI	CTGGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	3 cut(s)	203, 307, 314
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 143
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	56, 245
CviAII	CATG	2 cut(s)	73, 85
CviJI	RGCY	5 cut(s)	80, 106, 146, 239, 310
CviKI_1	RGCY	5 cut(s)	80, 106, 146, 239, 310
CviQI	GTAC	2 cut(s)	56, 245
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	225
FaeI	CATG	2 cut(s)	76, 88
FaiI	YATR	3 cut(s)	74, 86, 284
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	72, 84
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	76, 88
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	61, 266
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	169, 193
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	4 cut(s)	40, 106, 245, 312
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	131, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 143
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	76, 88
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	31, 104, 111, 139, 296
LweI	GCATC	4 cut(s)	16, 125, 250, 256
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	5 cut(s)	16, 55, 111, 218, 269
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	6 cut(s)	133, 193, 195, 199, 202, 228
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	77, 143
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	76, 88
NlaIV	GGNNCC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	57, 246
RsaNI	GTAC	2 cut(s)	56, 245
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	246
SetI	ASST	3 cut(s)	51, 100, 256
SfaNI	GCATC	4 cut(s)	16, 125, 250, 256
SinI	GGWCC	1 cut(s)	88
SsiI	CCGC	3 cut(s)	203, 307, 314
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	177
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	17, 147
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	88
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.