Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8244641.1

Orthogroup ID

OG0002371

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 779

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8244641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 623 bp

atactgctgcaatgggaaaaaagaagacagatgaagctggtgccgccatgaagggtaagtcaaccggaaaagatgcttctaaagatggaaagaaagtgaaagcaccaacagtctccgccatgttggccaacatggaccagaaacctgagaagcccaagaaggcatcttcctctagtgcaaaggcaaaagtcgctccaaaactttcatcctacactgatggtattgatctccctccctctgatgatgaggtggaagaggaacaacaatccaatcagcaaaggaggtcagaggctaagacgattgatatatccattacagagaaagagttaaaaaaacgtgaaaagaaggaccttcttgctgcccatgctgctgagctgtcaaagaaggaggccctgagagatgatcatgatgctttcactgttgttattggaagcagggcttcagtacttgagggtgaagatgcagatgctaatatcaaggacatatcaatagatagtttttctgtggcggctcgaggaaaggaactactaaagaatacatcagtgaagatatctcatgggaagagatatggtctggttggtccaaatgggatggggaagtctaccctcctgaagcttcttgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

207

Amino Acids

22.08

Weight (kDa)

9.33

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54540 AT3G54540
fragaria_vesca	FvH4_2g35540 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180 FvH4_6g37180
malus_domestica	MD00G1070400.v1.1 MD05G1058200.v1.1 MD05G1058300.v1.1 MD05G1058400.v1.1 MD17G1277800.v1.1
prunus_persica	Prupe.1G200300_v2.0.a1
pyrus_communis	pycom15g13030
rosa_chinensis	RchiOBHm_Chr2g0149831 RchiOBHm_Chr6g0306241
rosa_laevigata	RLG00000010810 RLG00000020449
rosa_multiflora	Rmu_co8244641.1_g000001 Rmu_co8465215.1_g000001 Rmu_sc0003594.1_g000001 Rmu_ssc0000308.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097640 Rroxscaffold_7G00161910
rosa_rugosa	Rorug02G0416800 Rorug02G0416900 Rorug06G0348300
rosa_samantha	Rh1AG115800 Rh1AG115900 Rh1CG111300 Rh1CG111400 Rh1DG120100 Rh1DG120200 Rh2AG475900 Rh2BG487600 Rh2CG461400 Rh2DG496400 Rh6AG460800 Rh6BG440300 Rh6DG461200
rosa_wichuraiana	Rw2G038810 Rw6G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	3 cut(s)	44, 116, 508
AcoI	YGGCCR	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	446
AluBI	AGCT	3 cut(s)	37, 375, 615
AluI	AGCT	3 cut(s)	37, 375, 615
Alw26I	GTCTC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	125, 389
ApeKI	GCWGC	3 cut(s)	7, 358, 367
AspS9I	GGNCC	4 cut(s)	135, 348, 390, 580
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	3 cut(s)	135, 348, 580
BalI	TGGCCA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	345, 354
BccI	CCATC	3 cut(s)	79, 211, 585
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	5 cut(s)	8, 44, 359, 368, 509
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	5 cut(s)	9, 45, 360, 369, 510
BmcAI	AGTACT	1 cut(s)	446
Bme18I	GGWCC	3 cut(s)	135, 348, 580
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	4 cut(s)	135, 348, 390, 580
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	5 cut(s)	63, 172, 399, 450, 456
BpiI	GAAGAC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	469
BsaWI	WCCGGW	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	205, 596
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	3 cut(s)	137, 362, 385
BseXI	GCAGC	2 cut(s)	345, 354
BshFI	GGCC	2 cut(s)	127, 391
BshNI	GGYRCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	127, 391
BsoBI	CYCGRG	1 cut(s)	512
Bsp143I	GATC	2 cut(s)	225, 402
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	3 cut(s)	44, 116, 508
BspANI	GGCC	2 cut(s)	127, 391
BspCNI	CTCAG	3 cut(s)	138, 363, 386
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	17
BssMI	GATC	2 cut(s)	225, 402
Bst4CI	ACNGT	2 cut(s)	111, 420
Bst6I	CTCTTC	2 cut(s)	248, 556
BstDEI	CTNAG	4 cut(s)	146, 293, 371, 394
BstF5I	GGATG	2 cut(s)	205, 596
BstKTI	GATC	2 cut(s)	228, 405
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	225, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 124, 190, 364, 367
BstV1I	GCAGC	2 cut(s)	345, 354
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	127, 391
BtsCI	GGATG	2 cut(s)	205, 596
BtsIMutI	CAGTG	3 cut(s)	212, 416, 548
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	135, 348, 390, 580
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	6 cut(s)	48, 120, 132, 364, 406, 556
CviJI	RGCY	9 cut(s)	37, 127, 153, 292, 375, 391, 439, 511, 615
CviKI_1	RGCY	9 cut(s)	37, 127, 153, 292, 375, 391, 439, 511, 615
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	4 cut(s)	146, 293, 371, 394
DpnI	GATC	2 cut(s)	227, 404
DpnII	GATC	2 cut(s)	225, 402
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	248, 556
EarI	CTCTTC	2 cut(s)	248, 556
EciI	GGCGGA	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	3 cut(s)	135, 348, 580
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	348, 390
EcoRV	GATATC	1 cut(s)	551
FaeI	CATG	6 cut(s)	51, 123, 135, 367, 409, 559
FaiI	YATR	9 cut(s)	49, 121, 133, 307, 365, 407, 484, 557, 569
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	6 cut(s)	47, 119, 131, 363, 405, 555
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	5 cut(s)	8, 44, 359, 368, 509
FokI	GGATG	2 cut(s)	192, 603
Fsp4HI	GCNGC	5 cut(s)	8, 44, 359, 368, 509
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	5 cut(s)	8, 44, 359, 368, 509
HaeIII	GGCC	2 cut(s)	127, 391
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	6 cut(s)	51, 123, 135, 367, 409, 559
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	613
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	62, 602
Hpy188I	TCNGA	2 cut(s)	240, 288
Hpy188III	TCNNGA	2 cut(s)	406, 609
Hpy8I	GTNNAC	2 cut(s)	62, 602
HpyAV	CCTTC	5 cut(s)	45, 153, 339, 361, 378
HpyCH4III	ACNGT	2 cut(s)	111, 420
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	10, 178, 463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 124, 190, 364, 367
HpyF3I	CTNAG	4 cut(s)	146, 293, 371, 394
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	6 cut(s)	51, 123, 135, 367, 409, 559
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	225, 402
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	23, 78, 151, 158, 406, 420, 559
Lsp1109I	GCAGC	2 cut(s)	345, 354
LweI	GCATC	5 cut(s)	63, 172, 399, 450, 456
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	336
MalI	GATC	2 cut(s)	227, 404
MboI	GATC	2 cut(s)	225, 402
MboII	GAAGA	6 cut(s)	36, 158, 265, 469, 558, 573
MlsI	TGGCCA	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	127
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	43, 124, 190, 364, 367
NdeII	GATC	2 cut(s)	225, 402
NlaIII	CATG	6 cut(s)	51, 123, 135, 367, 409, 559
NlaIV	GGNNCC	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	405
PkrI	GCNGC	5 cut(s)	9, 45, 360, 369, 510
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	4 cut(s)	135, 348, 390, 580
PspPPI	RGGWCCY	1 cut(s)	348
PspXI	VCTCGAGB	1 cut(s)	512
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	5 cut(s)	8, 44, 359, 368, 509
Sau3AI	GATC	2 cut(s)	225, 402
Sau96I	GGNCC	4 cut(s)	135, 348, 390, 580
ScaI	AGTACT	1 cut(s)	446
SetI	ASST	8 cut(s)	39, 147, 251, 286, 339, 353, 377, 617
SfaNI	GCATC	5 cut(s)	63, 172, 399, 450, 456
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	3 cut(s)	135, 348, 580
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	448, 512
SmoI	CTYRAG	2 cut(s)	448, 512
SsiI	CCGC	3 cut(s)	44, 116, 508
SspMI	CTAG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	111, 420
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	513
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	46, 511
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TscAI	CASTG	3 cut(s)	219, 423, 548
TseI	GCWGC	3 cut(s)	7, 358, 367
TspDTI	ATGAA	3 cut(s)	47, 64, 194
TspRI	CASTG	3 cut(s)	219, 423, 548
VpaK11BI	GGWCC	3 cut(s)	135, 348, 580
XhoI	CTCGAG	1 cut(s)	512
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.