Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014663

Physical Location & Seq

Genomic Coordinates Reverse (-)

32058898 .. 32061047

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1192500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGGGAGGGAAGAGGGGGGATGAAGCAGGAGCATCATCGTCTGGTGGGTTTTCATCAGCTGGAGCTGTAAGTGATCAGGGAAGAGGAAGACAAGAAAAGCAGAAGGAAATGGCTGAAAAGCTGAGTGCTTTTTATGATGTTGGAGAAGAAGACGAGGAAGAAGATGATAAGAGTAATGGGGTTGCTGCTGATGGTTTTATTCCTGGACCTTTGGTTTCTCTCAAGGAACAGATTGAGAAGGACAAGCATGATGAAAGCTTGAGGAGGTGGAAAGAGAAGCTGCTTGGTAGCTTGGAAGGCGATTTGAATGGCCAAATGGAACCTGAAGTCAAATTCCACTCCATCGGAATCATCTCTGAGGACTTCGGGGAAATCACTACTGCCTTGCCTGTCGCTGAAAATCAGATCGATCGTGTCCTGTTTACACTGCAAGAGGGATCTCAATATCGGCTTAAGATAACATTTAGTGTTCTGCACAACATTGTTTCTGGCCTTACTTACTCCAACACAGTGTGGAAAGGAGGACTCCAAGTCGATCAGAGCAAAGGAATGTTGGGTACGTTTGCTCCTAACAAAGAACTATACGTGCACACTTTGGAAGAGGAGACCACTCCATCTGGGTTGCTTGCAAGGGGCATTTATTCAGCAAAGCTTAAGTTCGAAGACGATGACAGGAGATGCCATATGGAACTTCAGTACTCCTTCGAGATCAAAAAGGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

243

Amino Acids

26.8

Weight (kDa)

4.9

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	54 - 240	4.3e-68	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20900
malus_domestica	MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica	Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis	pycom05g17950
rosa_chinensis	RchiOBHm_Chr6g0287301
rosa_laevigata	RLG00000012503
rosa_multiflora	Rmu_sc0013803.1_g000016
rosa_roxburghii	Rroxscaffold_7G00181560
rosa_rugosa	Rorug06G0186700
rosa_samantha	Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana	Rw6G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	348, 680
AdeI	CACNNNGTG	1 cut(s)	516
AfaI	GTAC	2 cut(s)	562, 701
AflII	CTTAAG	2 cut(s)	455, 656
AgsI	TTSAA	1 cut(s)	310
AhdI	GACNNNNNGTC	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	7 cut(s)	62, 68, 124, 261, 283, 294, 655
AluI	AGCT	7 cut(s)	62, 68, 124, 261, 283, 294, 655
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	602
Alw44I	GTGCAC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	313, 493
ApaLI	GTGCAC	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	188, 283
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	663
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	315
BbsI	GAAGAC	3 cut(s)	97, 159, 672
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	175, 270
BccI	CCATC	3 cut(s)	188, 353, 625
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	602
BfrI	CTTAAG	2 cut(s)	455, 656
BisI	GCNGC	2 cut(s)	189, 284
BlsI	GCNGC	2 cut(s)	190, 285
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	209
BmeRI	GACNNNNNGTC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	44, 671
BpiI	GAAGAC	3 cut(s)	97, 159, 672
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	209, 283
Bsa29I	ATCGAT	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	589
BsaI	GGTCTC	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	411
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	116, 351
BseRI	GAGGAG	2 cut(s)	280, 620
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	175, 270
BsgI	GTGCAG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	315, 495
BshVI	ATCGAT	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	315, 495
Bso31I	GGTCTC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
BspANI	GGCC	2 cut(s)	315, 495
BspCNI	CTCAG	2 cut(s)	117, 352
BspDI	ATCGAT	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	663
BspTI	CTTAAG	2 cut(s)	455, 656
BspTNI	GGTCTC	1 cut(s)	602
BssMI	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	3 cut(s)	8, 79, 597
BstAFI	CTTAAG	2 cut(s)	455, 656
BstBAI	YACGTR	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	2 cut(s)	125, 360
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	6 cut(s)	79, 411, 415, 443, 541, 714
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	175, 270
BstV2I	GAAGAC	3 cut(s)	97, 159, 672
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	315, 495
BsuTUI	ATCGAT	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	428, 519
Cac8I	GCNNGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	561, 700
CviAII	CATG	1 cut(s)	251
CviQI	GTAC	2 cut(s)	561, 700
DdeI	CTNAG	2 cut(s)	125, 360
DpnI	GATC	6 cut(s)	78, 410, 414, 442, 540, 713
DpnII	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
DraIII	CACNNNGTG	1 cut(s)	516
DriI	GACNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	3 cut(s)	8, 79, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	533
EarI	CTCTTC	3 cut(s)	8, 79, 597
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	348, 680
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	138, 252, 586, 687, 689
FatI	CATG	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	189, 284
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	189, 284
GluI	GCNGC	2 cut(s)	189, 284
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	315, 495
Hin1II	CATG	1 cut(s)	254
HindIII	AAGCTT	2 cut(s)	259, 653
HinfI	GANTC	2 cut(s)	351, 528
Hpy166II	GTNNAC	2 cut(s)	426, 592
Hpy188I	TCNGA	4 cut(s)	350, 361, 408, 543
Hpy188III	TCNNGA	1 cut(s)	709
Hpy8I	GTNNAC	2 cut(s)	426, 592
HpyAV	CCTTC	4 cut(s)	100, 235, 293, 715
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	2 cut(s)	563, 588
HpyCH4V	TGCA	4 cut(s)	433, 478, 592, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	125, 360
HpySE526I	ACGT	2 cut(s)	563, 588
Hsp92II	CATG	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
LmnI	GCTCC	3 cut(s)	32, 65, 574
Lsp1109I	GCAGC	2 cut(s)	175, 270
LweI	GCATC	2 cut(s)	44, 671
MaeII	ACGT	2 cut(s)	563, 588
MalI	GATC	6 cut(s)	78, 410, 414, 442, 540, 713
MboI	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
MboII	GAAGA	9 cut(s)	25, 96, 102, 161, 164, 173, 176, 614, 677
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	124, 531
MnlI	CCTC	9 cut(s)	9, 80, 151, 258, 261, 355, 430, 518, 598
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	2 cut(s)	456, 657
Msp20I	TGGCCA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	2 cut(s)	455, 656
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	300
NdeI	CATATG	1 cut(s)	687
NdeII	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	190, 285
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	562, 701
RsaNI	GTAC	2 cut(s)	561, 700
SaqAI	TTAA	2 cut(s)	456, 657
SatI	GCNGC	2 cut(s)	189, 284
Sau3AI	GATC	6 cut(s)	76, 408, 412, 440, 538, 711
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	44, 671
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	4 cut(s)	224, 262, 455, 656
SmoI	CTYRAG	4 cut(s)	224, 262, 455, 656
Sse9I	AATT	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	2 cut(s)	566, 591
TaqI	TCGA	4 cut(s)	411, 537, 663, 708
TasI	AATT	1 cut(s)	335
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	456, 657
Tru9I	TTAA	2 cut(s)	456, 657
TscAI	CASTG	2 cut(s)	435, 519
TseI	GCWGC	2 cut(s)	188, 283
TspDTI	ATGAA	3 cut(s)	39, 45, 270
TspRI	CASTG	2 cut(s)	435, 519
Vha464I	CTTAAG	2 cut(s)	455, 656
VneI	GTGCAC	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.