Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013803.1

Orthogroup ID

OG0014663

Physical Location & Seq

Genomic Coordinates Reverse (-)

45046 .. 46949

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013803.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggagggtgggaagagaggagatgaagcaggcccatcatcagaaaagctaaaggaactgagtgaaaagctaagtgagttctgtcatgttgaggaagaagaaggagaagaagatggtgaagatcacaggagtaatggggttgctgctggctttgttcctgggcctttggtttctctcaaggaacaaattgagaaagacaaggatgatgacagcttaaggaggtggaaacagaaactgcttggttccttggaaagcgatttggatggccaaatggaacctgaagtcaaattccactcaattggtatcatttccgatgactttggggaaataaatactccattgcccgttgatgaaaatctgattggtcgtgtcctgtttacactcaaagaaggatctgaatatcggcttaagctcgcatttagtgttctgcacaacattgtttctggccttacctattccaacacagtgtggaaaggaggacttcaagttgatcaaagcaaaggaatgttgggtacatttgctccgaatagagaaccctatgagcacaccttggaagaggagaccactccatctggggtgcttgcaaggggcctttactcggcaaagcttaagttcgaagacgatgacaagagatgttatatggaactgaaatactcctttgagataaaaaagcggagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

226

Amino Acids

25.38

Weight (kDa)

4.82

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20900
malus_domestica	MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica	Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis	pycom05g17950
rosa_chinensis	RchiOBHm_Chr6g0287301
rosa_laevigata	RLG00000012503
rosa_multiflora	Rmu_sc0013803.1_g000016
rosa_roxburghii	Rroxscaffold_7G00181560
rosa_rugosa	Rorug06G0186700
rosa_samantha	Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana	Rw6G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	673
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflII	CTTAAG	3 cut(s)	214, 407, 608
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	5 cut(s)	49, 70, 213, 412, 607
AluI	AGCT	5 cut(s)	49, 70, 213, 412, 607
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	5 cut(s)	31, 161, 265, 445, 589
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	32, 161, 589
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	4 cut(s)	43, 107, 257, 577
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	554
BfrI	CTTAAG	3 cut(s)	214, 407, 608
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	32, 161, 589
BmiI	GGNNCC	3 cut(s)	244, 276, 590
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	158, 246, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	158, 246, 549
BseGI	GGATG	2 cut(s)	208, 268
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	33, 572
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	5 cut(s)	33, 163, 267, 447, 591
BsiHKAI	GWGCWC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	554
BsnI	GGCC	5 cut(s)	33, 163, 267, 447, 591
Bso31I	GGTCTC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	121, 392, 490
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	5 cut(s)	33, 163, 267, 447, 591
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	244, 276, 590
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	615
BspTI	CTTAAG	3 cut(s)	214, 407, 608
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	158, 246, 549
BssMI	GATC	3 cut(s)	121, 392, 490
BssT1I	CCWWGG	2 cut(s)	246, 549
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	8, 549
BstAFI	CTTAAG	3 cut(s)	214, 407, 608
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	31, 148, 414, 582
BstDEI	CTNAG	2 cut(s)	59, 71
BstF5I	GGATG	2 cut(s)	208, 268
BstKTI	GATC	3 cut(s)	124, 395, 493
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	121, 392, 490
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	5 cut(s)	33, 163, 267, 447, 591
BtsCI	GGATG	2 cut(s)	208, 268
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	4 cut(s)	31, 148, 414, 582
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	32, 161, 589
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	59, 71
DpnI	GATC	3 cut(s)	123, 394, 492
DpnII	GATC	3 cut(s)	121, 392, 490
DraIII	CACNNNGTG	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	8, 549
EarI	CTCTTC	2 cut(s)	8, 549
Eco130I	CCWWGG	2 cut(s)	246, 549
Eco31I	GGTCTC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	246, 549
ErhI	CCWWGG	2 cut(s)	246, 549
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 540, 639, 641
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	215, 275
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	33, 163, 267, 447, 591
Hin1II	CATG	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	605
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	5 cut(s)	43, 313, 360, 397, 525
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	95, 383
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	430, 584
HpyF3I	CTNAG	2 cut(s)	59, 71
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	121, 392, 490
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	9 cut(s)	15, 112, 132, 144, 171, 291, 386, 429, 558
Lsp1109I	GCAGC	1 cut(s)	130
MalI	GATC	3 cut(s)	123, 394, 492
MboI	GATC	3 cut(s)	121, 392, 490
MboII	GAAGA	8 cut(s)	25, 107, 110, 119, 122, 131, 566, 629
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	3 cut(s)	186, 287, 297
MluNI	TGGCCA	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	11, 85, 213, 470, 550
Mox20I	TGGCCA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	3 cut(s)	215, 408, 609
Msp20I	TGGCCA	1 cut(s)	267
MspCI	CTTAAG	3 cut(s)	214, 407, 608
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	121, 392, 490
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	3 cut(s)	244, 276, 590
NmeAIII	GCCGAG	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	244, 276, 590
PspPI	GGNCC	3 cut(s)	32, 161, 589
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	215, 408, 609
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	121, 392, 490
Sau96I	GGNCC	3 cut(s)	32, 161, 589
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	9 cut(s)	51, 72, 215, 224, 280, 414, 455, 551, 609
SfuI	TTCGAA	1 cut(s)	615
SmlI	CTYRAG	4 cut(s)	176, 214, 407, 608
SmoI	CTYRAG	4 cut(s)	176, 214, 407, 608
Sse9I	AATT	3 cut(s)	186, 287, 297
SsiI	CCGC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	246, 549
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	186, 287, 297
Tru1I	TTAA	3 cut(s)	215, 408, 609
Tru9I	TTAA	3 cut(s)	215, 408, 609
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	39, 366
TspRI	CASTG	1 cut(s)	471
Vha464I	CTTAAG	3 cut(s)	214, 407, 608
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.