Rorug06G0186700

Rho GDP-dissociation inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014663
Physical Location & Seq
Forward (+)
29576606 .. 29577447
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0186700.1

Sequence Viewer

Length: 366 bp
ATGGAGTACTCGAAAGTAACAGCTCTTGATGAGGAGGAGAAGGTGACAGACAAGAGACCTTCAGTTTCCTATCATTACTTATATCCATGCGATTTCCTTGAAGAAGTACTAAGGGCCCTGTTCAAGTGTTTCGGTCTTGATAACAAATCACAGGCCTATGAAGAACAAGAACCAGAGAAAACCACCGGAGCAAACCCAGAGACAAGCACTCCTTCAACCCCAGAACTACAAGTTGCAGATCCATCTGACCCAAAAGAAGCTGCTGATCCTCCATCTTCAACCTCAGTAACCACTGAAATTGCTGCTGCAAGCACAAGGGTTGTAAGTCCACCAATAGGTAGTGGTAGAGGACCGCAGATTAACTAA

Protein Analysis

121

Amino Acids

13.17

Weight (kDa)

4.46

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep1_7 PF17232 16 - 65 1.4e-09 Elicitor peptide 1-7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014663)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20900
malus_domestica MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis pycom05g17950
rosa_chinensis RchiOBHm_Chr6g0287301
rosa_laevigata RLG00000012503
rosa_multiflora Rmu_sc0013803.1_g000016
rosa_roxburghii Rroxscaffold_7G00181560
rosa_rugosa Rorug06G0186700
rosa_samantha Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana Rw6G025770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AclWI GGATC 2 cut(s) 233, 260
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 2 cut(s) 8, 108
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 101, 124, 216, 279
AluBI AGCT 2 cut(s) 23, 260
AluI AGCT 2 cut(s) 23, 260
Alw26I GTCTC 2 cut(s) 49, 194
AlwI GGATC 2 cut(s) 233, 260
AoxI GGCC 2 cut(s) 114, 153
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 260, 302, 305
AspS9I GGNCC 3 cut(s) 114, 115, 350
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 247, 289, 292
BccI CCATC 2 cut(s) 250, 280
BcoDI GTCTC 2 cut(s) 49, 194
BisI GCNGC 3 cut(s) 261, 303, 306
BlsI GCNGC 3 cut(s) 262, 304, 307
BmcAI AGTACT 2 cut(s) 8, 108
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 114, 115, 350
BmiI GGNNCC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 47, 50
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 247, 289, 292
BshFI GGCC 2 cut(s) 116, 155
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 49, 194
BsnI GGCC 2 cut(s) 116, 155
Bso31I GGTCTC 1 cut(s) 49
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 238, 265
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 116, 155
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 2 cut(s) 233, 260
BspTNI GGTCTC 1 cut(s) 49
BssMI GATC 2 cut(s) 238, 265
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 110, 283
BstKTI GATC 2 cut(s) 241, 268
BstMAI GTCTC 2 cut(s) 49, 194
BstMBI GATC 2 cut(s) 238, 265
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 247, 289, 292
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 116, 155
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 114, 115, 350
Csp6I GTAC 2 cut(s) 7, 107
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 87
CviJI RGCY 4 cut(s) 23, 116, 155, 260
CviKI_1 RGCY 4 cut(s) 23, 116, 155, 260
CviQI GTAC 2 cut(s) 7, 107
DdeI CTNAG 2 cut(s) 110, 283
DpnI GATC 2 cut(s) 240, 267
DpnII GATC 2 cut(s) 238, 265
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 114, 115
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 82, 88, 159
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 261, 303, 306
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 261, 303, 306
GluI GCNGC 3 cut(s) 261, 303, 306
HaeIII GGCC 2 cut(s) 116, 155
HapII CCGG 1 cut(s) 186
Hin1II CATG 1 cut(s) 90
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 26, 137
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 34, 69, 222
HpyCH4V TGCA 2 cut(s) 236, 308
HpyF3I CTNAG 2 cut(s) 110, 283
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 238, 265
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 131, 137, 186, 199, 210, 234
Lsp1109I GCAGC 3 cut(s) 247, 289, 292
MaeIII GTNAC 3 cut(s) 16, 43, 286
MalI GATC 2 cut(s) 240, 267
MboI GATC 2 cut(s) 238, 265
MboII GAAGA 3 cut(s) 113, 173, 267
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 297
MnlI CCTC 5 cut(s) 25, 28, 279, 292, 341
MseI TTAA 1 cut(s) 360
MspI CCGG 1 cut(s) 186
NdeII GATC 2 cut(s) 238, 265
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 43
PceI AGGCCT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 262, 304, 307
PspN4I GGNNCC 1 cut(s) 116
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 3 cut(s) 114, 115, 350
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 2 cut(s) 8, 108
RsaNI GTAC 2 cut(s) 7, 107
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 261, 303, 306
Sau3AI GATC 2 cut(s) 238, 265
Sau96I GGNCC 3 cut(s) 114, 115, 350
ScaI AGTACT 2 cut(s) 8, 108
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 25, 45, 61, 262, 284, 340
SinI GGWCC 1 cut(s) 350
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 155
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 122
TasI AATT 1 cut(s) 297
TatI WGTACW 2 cut(s) 6, 106
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 260, 302, 305
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 350
ZrmI AGTACT 2 cut(s) 8, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.