Rh6CG306400

Rho GDP-dissociation inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014663
Physical Location & Seq
Forward (+)
48682868 .. 48684461
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG306400.1

Sequence Viewer

Length: 411 bp
ATGGAACCTGAAGTCAAATTCCACTCAATTGGTATCATTTCCGATGACTTTGGGGAAATAAATACTCCATTGCCCGTTGATGAAAATCTGATCGGTCGTGTCCTGTTTACACTCAAAGAAGGATCTGAATATCGGCTTAAGCTCACATTTAGTGTTCTGCACAACATTGTTTCTGGCCTTACCTATTCCAACACAGTGTGGAAAGGAGGACTTCAAGTTGATCAAAGCAAAGGAATGTTGGGTACATTTGCTCCGAATAGAGAACCCTATGAGCACACCTTGGAAGAGGAGACCACTCCATCTGGGGTGCTTGCAAGGGGCCTTTACTCGGCAAAGCTTAAGGTGCGTTGCAGTTTGCACTTACGTATAGGCACTTGTATGCAGCAAGCTTATTTTGAGATTGAAAAGTGA

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

5.79

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 2 - 115 7.8e-42 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014663)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20900
malus_domestica MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis pycom05g17950
rosa_chinensis RchiOBHm_Chr6g0287301
rosa_laevigata RLG00000012503
rosa_multiflora Rmu_sc0013803.1_g000016
rosa_roxburghii Rroxscaffold_7G00181560
rosa_rugosa Rorug06G0186700
rosa_samantha Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana Rw6G025770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 328
AflII CTTAAG 2 cut(s) 137, 338
AgsI TTSAA 2 cut(s) 215, 404
AluBI AGCT 3 cut(s) 142, 337, 389
AluI AGCT 3 cut(s) 142, 337, 389
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 175, 319
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 307
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 284
BfrI CTTAAG 2 cut(s) 137, 338
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 6, 320
BsaAI YACGTR 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 177, 321
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 177, 321
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 90, 122, 220
BspANI GGCC 2 cut(s) 177, 321
BspLI GGNNCC 2 cut(s) 6, 320
BspPI GGATC 1 cut(s) 130
BspTI CTTAAG 2 cut(s) 137, 338
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 90, 122, 220
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 2 cut(s) 137, 338
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 312, 387
BstKTI GATC 3 cut(s) 93, 125, 223
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 3 cut(s) 90, 122, 220
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstSNI TACGTA 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 2 cut(s) 177, 321
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 312, 387
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 243
CviJI RGCY 6 cut(s) 136, 142, 177, 321, 337, 389
CviKI_1 RGCY 6 cut(s) 136, 142, 177, 321, 337, 389
CviQI GTAC 1 cut(s) 243
DpnI GATC 3 cut(s) 92, 124, 222
DpnII GATC 3 cut(s) 90, 122, 220
DraIII CACNNNGTG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco105I TACGTA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaiI YATR 3 cut(s) 270, 368, 380
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 2 cut(s) 177, 321
HindIII AAGCTT 2 cut(s) 335, 387
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 4 cut(s) 43, 90, 127, 255
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 5 cut(s) 160, 314, 351, 358, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 90, 122, 220
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 4 cut(s) 21, 116, 159, 288
Lsp1109I GCAGC 1 cut(s) 394
MaeII ACGT 1 cut(s) 364
MalI GATC 3 cut(s) 92, 124, 222
MboI GATC 3 cut(s) 90, 122, 220
MboII GAAGA 1 cut(s) 296
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 17, 27
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 200, 280
MseI TTAA 2 cut(s) 138, 339
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 2 cut(s) 137, 338
MunI CAATTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 343
NdeII GATC 3 cut(s) 90, 122, 220
NlaIV GGNNCC 2 cut(s) 6, 320
NmeAIII GCCGAG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 6, 320
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 138, 339
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 3 cut(s) 90, 122, 220
Sau96I GGNCC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 10, 144, 185, 281, 339, 345, 367, 391
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 137, 338
SmoI CTYRAG 2 cut(s) 137, 338
SnaBI TACGTA 1 cut(s) 365
Sse9I AATT 2 cut(s) 17, 27
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 367
TaqII GACCGA 1 cut(s) 83
TasI AATT 2 cut(s) 17, 27
Tru1I TTAA 2 cut(s) 138, 339
Tru9I TTAA 2 cut(s) 138, 339
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 201
Vha464I CTTAAG 2 cut(s) 137, 338
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.