Rh6CG311700

Rho GDP-dissociation inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014663
Physical Location & Seq
Reverse (-)
49622692 .. 49625510
2819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG311700.1

Sequence Viewer

Length: 585 bp
ATGGAACCTGAAGTCAAATTCCACTCAATTGGTATCATTTCCGATGACTTTGGGGAAATAAATACTCCATTGCCCGTTGATGAAAATCTGATCGGTCGTGTCCTGTTTACACTCAAAGAAGGATCTGAATATCGGCTTAAGCTCACATTTAGTGTTCTGCACAACATTGTTTCTGGCCTTACCTATTCCAACACAGTGTGGAAAGGAGGACTTCAAGTTGATCAAAGCAAAGGAATGTTGGGTACATTTGCTCCGAATAGAGAACCCTATGAGCACACCTTGGAAGAGGAGACCACTCCATCTGGGGTGCTTGCAAGGGGCCTTTACTCGGCAAAGCTTAAGTTCGAAGACGATGACAAGAGATGTTATATGGAACTGAAATACTCCTTTGAGATCAAAAAGCGGATCACTGCTAGATTCCGAGACAATGTAAATAGTTACACATTTCGAGTGAATAACAATCTGATAGCAAATCATGTTAACAATGAATTCAAGAAATACTTTGGTGGTGCAATGGTTCAGCAACATGGTGCTGAGAAGCTACCAGAAAAAATAGACTATATGGAGAAAATTTGGGGGAGCTGA

Protein Analysis

194

Amino Acids

22.28

Weight (kDa)

6.23

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 2 - 134 6.2e-53 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014663)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20900
malus_domestica MD05G1192500.v1.1 MD10G1179000.v1.1
prunus_persica Prupe.8G218800_v2.0.a1 Prupe.8G218800_v2.0.a1
pyrus_communis pycom05g17950
rosa_chinensis RchiOBHm_Chr6g0287301
rosa_laevigata RLG00000012503
rosa_multiflora Rmu_sc0013803.1_g000016
rosa_roxburghii Rroxscaffold_7G00181560
rosa_rugosa Rorug06G0186700
rosa_samantha Rh6AG298100 Rh6BG303600 Rh6CG306400 Rh6CG311700 Rh6DG295300
rosa_wichuraiana Rw6G025770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 403
AclWI GGATC 2 cut(s) 130, 413
AcsI RAATTY 3 cut(s) 17, 488, 570
AcuI CTGAAG 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 328
AflII CTTAAG 2 cut(s) 137, 338
AgsI TTSAA 2 cut(s) 215, 493
AluBI AGCT 4 cut(s) 142, 337, 541, 582
AluI AGCT 4 cut(s) 142, 337, 541, 582
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 284, 417
AlwI GGATC 2 cut(s) 130, 413
AoxI GGCC 2 cut(s) 175, 319
ApoI RAATTY 3 cut(s) 17, 488, 570
AspS9I GGNCC 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 1 cut(s) 307
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 284, 417
BfaI CTAG 1 cut(s) 414
BfrI CTTAAG 2 cut(s) 137, 338
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 6, 320
BpiI GAAGAC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 2 cut(s) 68, 519
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 68, 519
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 177, 321
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 284, 417
BsnI GGCC 2 cut(s) 177, 321
Bso31I GGTCTC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 5 cut(s) 90, 122, 220, 393, 405
BspACI CCGC 1 cut(s) 403
BspANI GGCC 2 cut(s) 177, 321
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 6, 320
BspPI GGATC 2 cut(s) 130, 413
BspT104I TTCGAA 1 cut(s) 345
BspTI CTTAAG 2 cut(s) 137, 338
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 68, 519
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 5 cut(s) 90, 122, 220, 393, 405
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 2 cut(s) 137, 338
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 534
BstKTI GATC 5 cut(s) 93, 125, 223, 396, 408
BstMAI GTCTC 2 cut(s) 284, 417
BstMBI GATC 5 cut(s) 90, 122, 220, 393, 405
BstMCI CGRYCG 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 2 cut(s) 177, 321
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 201, 408
Cac8I GCNNGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 476, 527
CviJI RGCY 7 cut(s) 136, 142, 177, 321, 337, 541, 582
CviKI_1 RGCY 7 cut(s) 136, 142, 177, 321, 337, 541, 582
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 534
DpnI GATC 5 cut(s) 92, 124, 222, 395, 407
DpnII GATC 5 cut(s) 90, 122, 220, 393, 405
DraIII CACNNNGTG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 479, 530
FaiI YATR 7 cut(s) 270, 369, 371, 477, 528, 561, 563
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 485, 517
FatI CATG 2 cut(s) 475, 526
FbaI TGATCA 1 cut(s) 220
FspBI CTAG 1 cut(s) 414
HaeIII GGCC 2 cut(s) 177, 321
Hin1II CATG 2 cut(s) 479, 530
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 417
HpaI GTTAAC 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 108, 481
Hpy188I TCNGA 6 cut(s) 43, 90, 127, 255, 422, 465
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 2 cut(s) 108, 481
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 160, 314, 512
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 2 cut(s) 479, 530
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 90, 122, 220, 393, 405
LmnI GCTCC 2 cut(s) 256, 579
LpnPI CCDG 5 cut(s) 21, 116, 159, 288, 558
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 437
MalI GATC 5 cut(s) 92, 124, 222, 395, 407
MboI GATC 5 cut(s) 90, 122, 220, 393, 405
MboII GAAGA 2 cut(s) 296, 359
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 4 cut(s) 17, 27, 488, 570
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 200, 280
MseI TTAA 3 cut(s) 138, 339, 480
MspCI CTTAAG 2 cut(s) 137, 338
MunI CAATTG 1 cut(s) 27
NdeII GATC 5 cut(s) 90, 122, 220, 393, 405
NlaIII CATG 2 cut(s) 479, 530
NlaIV GGNNCC 2 cut(s) 6, 320
NmeAIII GCCGAG 1 cut(s) 308
NspV TTCGAA 1 cut(s) 345
PfeI GAWTC 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 6, 320
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 138, 339, 480
Sau3AI GATC 5 cut(s) 90, 122, 220, 393, 405
Sau96I GGNCC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 10, 144, 185, 281, 339, 543, 584
SfuI TTCGAA 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 137, 338
SmoI CTYRAG 2 cut(s) 137, 338
Sse9I AATT 4 cut(s) 17, 27, 488, 570
SsiI CCGC 1 cut(s) 403
SspMI CTAG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 345, 448
TaqII GACCGA 1 cut(s) 83
TasI AATT 4 cut(s) 17, 27, 488, 570
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 3 cut(s) 138, 339, 480
Tru9I TTAA 3 cut(s) 138, 339, 480
TscAI CASTG 2 cut(s) 201, 415
TspDTI ATGAA 2 cut(s) 96, 501
TspRI CASTG 2 cut(s) 201, 415
Vha464I CTTAAG 2 cut(s) 137, 338
XapI RAATTY 3 cut(s) 17, 488, 570
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.